[INFO] cloning repository https://github.com/zaeleus/noodles-count-features
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7671c6dc1a99fc23253e7d6c0a1d0e2a131f9148
[INFO] testing zaeleus/noodles-count-features against beta-2021-09-08 for beta-1.56-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-0/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain beta-2021-09-08
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features
[INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/zaeleus/interval-tree.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles v0.1.0
[INFO] [stderr]   Downloaded noodles-bam v0.1.0
[INFO] [stderr]   Downloaded git-testament-derive v0.1.12
[INFO] [stderr]   Downloaded noodles-core v0.1.0
[INFO] [stderr]   Downloaded noodles-sam v0.1.0
[INFO] [stderr]   Downloaded git-testament v0.2.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.1.0
[INFO] [stderr]   Downloaded noodles-gff v0.1.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] b6dd93f5d2e3c38266d44f6013107ea07194ea2e12ccc7ebe7a9d64c1584cd98
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "b6dd93f5d2e3c38266d44f6013107ea07194ea2e12ccc7ebe7a9d64c1584cd98", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b6dd93f5d2e3c38266d44f6013107ea07194ea2e12ccc7ebe7a9d64c1584cd98", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b6dd93f5d2e3c38266d44f6013107ea07194ea2e12ccc7ebe7a9d64c1584cd98", kill_on_drop: false }`
[INFO] [stdout] b6dd93f5d2e3c38266d44f6013107ea07194ea2e12ccc7ebe7a9d64c1584cd98
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 795fcb292c196ed6b3bf1b01521d74a0211daf0207870ba44ff128361d29ce01
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "795fcb292c196ed6b3bf1b01521d74a0211daf0207870ba44ff128361d29ce01", kill_on_drop: false }`
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling no-std-compat v0.4.1
[INFO] [stderr]    Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725)
[INFO] [stderr]    Compiling tokio v1.8.1
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling thread_local v1.1.3
[INFO] [stderr]    Compiling noodles-gff v0.1.0
[INFO] [stderr]    Compiling tracing-serde v0.1.2
[INFO] [stderr]    Compiling serde_json v1.0.64
[INFO] [stderr]    Compiling noodles-bgzf v0.1.0
[INFO] [stderr]    Compiling tracing-attributes v0.1.15
[INFO] [stderr]    Compiling git-testament-derive v0.1.12
[INFO] [stderr]    Compiling noodles-sam v0.1.0
[INFO] [stderr]    Compiling noodles-core v0.1.0
[INFO] [stderr]    Compiling noodles-bam v0.1.0
[INFO] [stderr]    Compiling git-testament v0.2.0
[INFO] [stderr]    Compiling tracing v0.1.26
[INFO] [stderr]    Compiling noodles v0.1.0
[INFO] [stderr]    Compiling tracing-subscriber v0.2.19
[INFO] [stderr]    Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 23.90s
[INFO] running `Command { std: "docker" "inspect" "795fcb292c196ed6b3bf1b01521d74a0211daf0207870ba44ff128361d29ce01", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "795fcb292c196ed6b3bf1b01521d74a0211daf0207870ba44ff128361d29ce01", kill_on_drop: false }`
[INFO] [stdout] 795fcb292c196ed6b3bf1b01521d74a0211daf0207870ba44ff128361d29ce01
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d307cffb22311068ba25df29eb27e587e8aaefde14f9f4639a7ab6177fcfe35e
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "d307cffb22311068ba25df29eb27e587e8aaefde14f9f4639a7ab6177fcfe35e", kill_on_drop: false }`
[INFO] [stderr]    Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 3.81s
[INFO] running `Command { std: "docker" "inspect" "d307cffb22311068ba25df29eb27e587e8aaefde14f9f4639a7ab6177fcfe35e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d307cffb22311068ba25df29eb27e587e8aaefde14f9f4639a7ab6177fcfe35e", kill_on_drop: false }`
[INFO] [stdout] d307cffb22311068ba25df29eb27e587e8aaefde14f9f4639a7ab6177fcfe35e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 4c9a90a4741d2efd40b9149957447a1d36162c3c11b61e7ea3525276fa05c2b1
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "4c9a90a4741d2efd40b9149957447a1d36162c3c11b61e7ea3525276fa05c2b1", kill_on_drop: false }`
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stdout] running 27 tests
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-8ddd6d8d28a11e67)
[INFO] [stdout] test commands::tests::test_from_str ... ok
[INFO] [stdout] test count::context::tests::test_add_event ... ok
[INFO] [stdout] test count::tests::test_get_reference ... ok
[INFO] [stdout] test count::writer::tests::test_write_stats ... ok
[INFO] [stdout] test feature::tests::test_end ... ok
[INFO] [stdout] test feature::tests::test_strand ... ok
[INFO] [stdout] test match_intervals::tests::test_next ... ok
[INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok
[INFO] [stdout] test feature::tests::test_is_empty ... ok
[INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok
[INFO] [stdout] test feature::tests::test_len ... ok
[INFO] [stdout] test record_pairs::pair_position::tests::test_mate ... ok
[INFO] [stdout] test normalization::method::tests::test_from_str ... ok
[INFO] [stdout] test record_pairs::pair_position::tests::test_try_from_flag ... ok
[INFO] [stdout] test normalization::writer::tests::test_write_values ... ok
[INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok
[INFO] [stdout] test record_pairs::tests::test_key ... ok
[INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok
[INFO] [stdout] test tests::test_read_features ... ok
[INFO] [stdout] test record_pairs::tests::test_mate_key ... ok
[INFO] [stdout] test count::reader::tests::test_read_counts ... ok
[INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok
[INFO] [stdout] test count::writer::tests::test_write_counts ... ok
[INFO] [stdout] test normalization::tests::test_merge_features ... ok
[INFO] [stdout] test count::context::tests::test_add ... ok
[INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok
[INFO] [stdout] test feature::tests::test_start ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/noodles_squab-a49e0e6d122eec27)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/quantify_single_end_forward_test.rs (/opt/rustwide/target/debug/deps/quantify_single_end_forward_test-d2573f007d6f8843)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stderr]    Doc-tests noodles-squab
[INFO] [stdout] test test_quantify_with_single_end_forward_sample ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.08s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "4c9a90a4741d2efd40b9149957447a1d36162c3c11b61e7ea3525276fa05c2b1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4c9a90a4741d2efd40b9149957447a1d36162c3c11b61e7ea3525276fa05c2b1", kill_on_drop: false }`
[INFO] [stdout] 4c9a90a4741d2efd40b9149957447a1d36162c3c11b61e7ea3525276fa05c2b1