[INFO] cloning repository https://github.com/luyoutao/sam_seq_compressibility [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/luyoutao/sam_seq_compressibility" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fluyoutao%2Fsam_seq_compressibility", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fluyoutao%2Fsam_seq_compressibility'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] cc2d3b98dd10a2db03c874689de48882dca05984 [INFO] testing luyoutao/sam_seq_compressibility against beta-2021-09-08 for beta-1.56-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fluyoutao%2Fsam_seq_compressibility" "/workspace/builds/worker-77/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-77/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/luyoutao/sam_seq_compressibility on toolchain beta-2021-09-08 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/luyoutao/sam_seq_compressibility [INFO] finished tweaking git repo https://github.com/luyoutao/sam_seq_compressibility [INFO] tweaked toml for git repo https://github.com/luyoutao/sam_seq_compressibility written to /workspace/builds/worker-77/source/Cargo.toml [INFO] crate git repo https://github.com/luyoutao/sam_seq_compressibility already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9c2bb215075e1d6212a1302056e6045b718af3b15f4d84d2c534b74d844b457c [INFO] running `Command { std: "docker" "start" "-a" "9c2bb215075e1d6212a1302056e6045b718af3b15f4d84d2c534b74d844b457c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9c2bb215075e1d6212a1302056e6045b718af3b15f4d84d2c534b74d844b457c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9c2bb215075e1d6212a1302056e6045b718af3b15f4d84d2c534b74d844b457c", kill_on_drop: false }` [INFO] [stdout] 9c2bb215075e1d6212a1302056e6045b718af3b15f4d84d2c534b74d844b457c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 812ee5eaaa7af4c8b091ebb11606d6e5cc04b6936797f302c6d18913897bccdd [INFO] running `Command { std: "docker" "start" "-a" "812ee5eaaa7af4c8b091ebb11606d6e5cc04b6936797f302c6d18913897bccdd", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling autocfg v1.0.0 [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling memchr v2.3.3 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling adler v0.2.3 [INFO] [stderr] Compiling regex-syntax v0.6.18 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling getopts v0.2.21 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling miniz_oxide v0.4.0 [INFO] [stderr] Compiling num-traits v0.2.12 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling aho-corasick v0.7.13 [INFO] [stderr] Compiling time v0.1.43 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.16 [INFO] [stderr] Compiling chrono v0.4.13 [INFO] [stderr] Compiling regex v1.3.9 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling sam_seq_compressibility v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `debug`, `error`, `warn` [INFO] [stdout] --> src/main.rs:12:11 [INFO] [stdout] | [INFO] [stdout] 12 | use log::{debug, error, info, trace, warn, LevelFilter}; [INFO] [stdout] | ^^^^^ ^^^^^ ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:16:41 [INFO] [stdout] | [INFO] [stdout] 16 | use std::io::{self, BufRead, BufReader, BufWriter, Read, Write}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::str::from_utf8` [INFO] [stdout] --> src/main.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::str::from_utf8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `read_pair` is never read [INFO] [stdout] --> src/main.rs:371:17 [INFO] [stdout] | [INFO] [stdout] 371 | let mut read_pair: Option = None; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:367:13 [INFO] [stdout] | [INFO] [stdout] 367 | let mut infh = self.infh.as_mut().expect("Failed to access infh!"); [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:368:13 [INFO] [stdout] | [INFO] [stdout] 368 | let mut outfh = self.outfh.as_mut().expect("Failed to access outfh"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `endtype` [INFO] [stdout] --> src/main.rs:322:5 [INFO] [stdout] | [INFO] [stdout] 322 | endtype: EndType, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:372:9 [INFO] [stdout] | [INFO] [stdout] 372 | outfh.write(format!("ReadID\tSeqR1\tSeqR2\tSeqPair\tCompressibilityR1\tCompressibilityR2\tCompressibilityPair\n").as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:433:21 [INFO] [stdout] | [INFO] [stdout] 433 | outfh.write(format!("{}\t{}\t{}\t{}", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:454:21 [INFO] [stdout] | [INFO] [stdout] 454 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:496:17 [INFO] [stdout] | [INFO] [stdout] 496 | outfh.write(format!("{}\t{}\t{}\t{}\n", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:516:17 [INFO] [stdout] | [INFO] [stdout] 516 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 52.22s [INFO] running `Command { std: "docker" "inspect" "812ee5eaaa7af4c8b091ebb11606d6e5cc04b6936797f302c6d18913897bccdd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "812ee5eaaa7af4c8b091ebb11606d6e5cc04b6936797f302c6d18913897bccdd", kill_on_drop: false }` [INFO] [stdout] 812ee5eaaa7af4c8b091ebb11606d6e5cc04b6936797f302c6d18913897bccdd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 298f0d19f3782c95d4700cc1bdc6acfac9f60ddb08f69f509f976c763e280c6b [INFO] running `Command { std: "docker" "start" "-a" "298f0d19f3782c95d4700cc1bdc6acfac9f60ddb08f69f509f976c763e280c6b", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling sam_seq_compressibility v0.2.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused imports: `debug`, `error`, `warn` [INFO] [stdout] --> src/main.rs:12:11 [INFO] [stdout] | [INFO] [stdout] 12 | use log::{debug, error, info, trace, warn, LevelFilter}; [INFO] [stdout] | ^^^^^ ^^^^^ ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BufWriter` [INFO] [stdout] --> src/main.rs:16:41 [INFO] [stdout] | [INFO] [stdout] 16 | use std::io::{self, BufRead, BufReader, BufWriter, Read, Write}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::str::from_utf8` [INFO] [stdout] --> src/main.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use std::str::from_utf8; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `read_pair` is never read [INFO] [stdout] --> src/main.rs:371:17 [INFO] [stdout] | [INFO] [stdout] 371 | let mut read_pair: Option = None; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:367:13 [INFO] [stdout] | [INFO] [stdout] 367 | let mut infh = self.infh.as_mut().expect("Failed to access infh!"); [INFO] [stdout] | ----^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:368:13 [INFO] [stdout] | [INFO] [stdout] 368 | let mut outfh = self.outfh.as_mut().expect("Failed to access outfh"); [INFO] [stdout] | ----^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field is never read: `endtype` [INFO] [stdout] --> src/main.rs:322:5 [INFO] [stdout] | [INFO] [stdout] 322 | endtype: EndType, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:372:9 [INFO] [stdout] | [INFO] [stdout] 372 | outfh.write(format!("ReadID\tSeqR1\tSeqR2\tSeqPair\tCompressibilityR1\tCompressibilityR2\tCompressibilityPair\n").as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_must_use)]` on by default [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:433:21 [INFO] [stdout] | [INFO] [stdout] 433 | outfh.write(format!("{}\t{}\t{}\t{}", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:454:21 [INFO] [stdout] | [INFO] [stdout] 454 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:496:17 [INFO] [stdout] | [INFO] [stdout] 496 | outfh.write(format!("{}\t{}\t{}\t{}\n", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused `Result` that must be used [INFO] [stdout] --> src/main.rs:516:17 [INFO] [stdout] | [INFO] [stdout] 516 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 12 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.64s [INFO] running `Command { std: "docker" "inspect" "298f0d19f3782c95d4700cc1bdc6acfac9f60ddb08f69f509f976c763e280c6b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "298f0d19f3782c95d4700cc1bdc6acfac9f60ddb08f69f509f976c763e280c6b", kill_on_drop: false }` [INFO] [stdout] 298f0d19f3782c95d4700cc1bdc6acfac9f60ddb08f69f509f976c763e280c6b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-77/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 9460a46121653ce30f4e9469d103e4c50771eaad68ddc3ed0f794b663be27be6 [INFO] running `Command { std: "docker" "start" "-a" "9460a46121653ce30f4e9469d103e4c50771eaad68ddc3ed0f794b663be27be6", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: unused imports: `debug`, `error`, `warn` [INFO] [stderr] --> src/main.rs:12:11 [INFO] [stderr] | [INFO] [stderr] 12 | use log::{debug, error, info, trace, warn, LevelFilter}; [INFO] [stderr] | ^^^^^ ^^^^^ ^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused import: `BufWriter` [INFO] [stderr] --> src/main.rs:16:41 [INFO] [stderr] | [INFO] [stderr] 16 | use std::io::{self, BufRead, BufReader, BufWriter, Read, Write}; [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: unused import: `std::str::from_utf8` [INFO] [stderr] --> src/main.rs:20:5 [INFO] [stderr] | [INFO] [stderr] 20 | use std::str::from_utf8; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: value assigned to `read_pair` is never read [INFO] [stderr] --> src/main.rs:371:17 [INFO] [stderr] | [INFO] [stderr] 371 | let mut read_pair: Option = None; [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_assignments)]` on by default [INFO] [stderr] = help: maybe it is overwritten before being read? [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:367:13 [INFO] [stderr] | [INFO] [stderr] 367 | let mut infh = self.infh.as_mut().expect("Failed to access infh!"); [INFO] [stderr] | ----^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:368:13 [INFO] [stderr] | [INFO] [stderr] 368 | let mut outfh = self.outfh.as_mut().expect("Failed to access outfh"); [INFO] [stderr] | ----^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] [INFO] [stderr] warning: field is never read: `endtype` [INFO] [stderr] --> src/main.rs:322:5 [INFO] [stderr] | [INFO] [stderr] 322 | endtype: EndType, [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:372:9 [INFO] [stderr] | [INFO] [stderr] 372 | outfh.write(format!("ReadID\tSeqR1\tSeqR2\tSeqPair\tCompressibilityR1\tCompressibilityR2\tCompressibilityPair\n").as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_must_use)]` on by default [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:433:21 [INFO] [stderr] | [INFO] [stderr] 433 | outfh.write(format!("{}\t{}\t{}\t{}", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:454:21 [INFO] [stderr] | [INFO] [stderr] 454 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:496:17 [INFO] [stderr] | [INFO] [stderr] 496 | outfh.write(format!("{}\t{}\t{}\t{}\n", &id, &seq1, &seq2, &seqs).as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: unused `Result` that must be used [INFO] [stderr] --> src/main.rs:516:17 [INFO] [stderr] | [INFO] [stderr] 516 | outfh.write(format!("\t{}\t{}\t{}\n", ratio1, ratio2, ratio).as_bytes()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: this `Result` may be an `Err` variant, which should be handled [INFO] [stderr] [INFO] [stderr] warning: `sam_seq_compressibility` (bin "sam_seq_compressibility" test) generated 12 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.37s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/sam_seq_compressibility-85716074cc8ee23d) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "9460a46121653ce30f4e9469d103e4c50771eaad68ddc3ed0f794b663be27be6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9460a46121653ce30f4e9469d103e4c50771eaad68ddc3ed0f794b663be27be6", kill_on_drop: false }` [INFO] [stdout] 9460a46121653ce30f4e9469d103e4c50771eaad68ddc3ed0f794b663be27be6