[INFO] cloning repository https://github.com/laeblab/crispy
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/laeblab/crispy" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 5d1c69457c80ee0867dc55ddf1ad74a3b6909ccf
[INFO] testing laeblab/crispy against beta-2021-09-08 for beta-1.56-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Flaeblab%2Fcrispy" "/workspace/builds/worker-0/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/laeblab/crispy on toolchain beta-2021-09-08
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/laeblab/crispy
[INFO] finished tweaking git repo https://github.com/laeblab/crispy
[INFO] tweaked toml for git repo https://github.com/laeblab/crispy written to /workspace/builds/worker-0/source/Cargo.toml
[INFO] crate git repo https://github.com/laeblab/crispy already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded console v0.9.0
[INFO] [stderr]   Downloaded indicatif v0.12.0
[INFO] [stderr]   Downloaded bio-types v0.5.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2d085945fcb71b657684f29cf2565201e8a29b0fb6d6615f0967bad1af1fab42
[INFO] running `Command { std: "docker" "start" "-a" "2d085945fcb71b657684f29cf2565201e8a29b0fb6d6615f0967bad1af1fab42", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2d085945fcb71b657684f29cf2565201e8a29b0fb6d6615f0967bad1af1fab42", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2d085945fcb71b657684f29cf2565201e8a29b0fb6d6615f0967bad1af1fab42", kill_on_drop: false }`
[INFO] [stdout] 2d085945fcb71b657684f29cf2565201e8a29b0fb6d6615f0967bad1af1fab42
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0bec038f7d44c73ba35f75dd2b95e1e9dd7daf08f1cae52ea7dda7acf0d5d389
[INFO] running `Command { std: "docker" "start" "-a" "0bec038f7d44c73ba35f75dd2b95e1e9dd7daf08f1cae52ea7dda7acf0d5d389", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling proc-macro2 v1.0.5
[INFO] [stderr]    Compiling syn v1.0.5
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]    Compiling serde v1.0.101
[INFO] [stderr]    Compiling ryu v1.0.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling bitflags v1.2.0
[INFO] [stderr]    Compiling unicode-segmentation v1.3.0
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling number_prefix v0.3.0
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling num-complex v0.2.3
[INFO] [stderr]    Compiling num-integer v0.1.41
[INFO] [stderr]    Compiling error-chain v0.12.1
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling regex-automata v0.1.8
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling getrandom v0.1.14
[INFO] [stderr]    Compiling termios v0.3.1
[INFO] [stderr]    Compiling clicolors-control v1.0.1
[INFO] [stderr]    Compiling num_cpus v1.10.1
[INFO] [stderr]    Compiling backtrace-sys v0.1.31
[INFO] [stderr]    Compiling atty v0.2.13
[INFO] [stderr]    Compiling backtrace v0.3.38
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rayon-core v1.6.0
[INFO] [stderr]    Compiling aho-corasick v0.7.6
[INFO] [stderr]    Compiling csv-core v0.1.6
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling rayon v1.2.0
[INFO] [stderr]    Compiling regex v1.3.1
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling console v0.9.0
[INFO] [stderr]    Compiling indicatif v0.12.0
[INFO] [stderr]    Compiling serde_derive v1.0.101
[INFO] [stderr]    Compiling snafu-derive v0.6.8
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling snafu v0.6.8
[INFO] [stderr]    Compiling bstr v0.2.8
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.1
[INFO] [stderr]    Compiling crispyr v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 46.07s
[INFO] running `Command { std: "docker" "inspect" "0bec038f7d44c73ba35f75dd2b95e1e9dd7daf08f1cae52ea7dda7acf0d5d389", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0bec038f7d44c73ba35f75dd2b95e1e9dd7daf08f1cae52ea7dda7acf0d5d389", kill_on_drop: false }`
[INFO] [stdout] 0bec038f7d44c73ba35f75dd2b95e1e9dd7daf08f1cae52ea7dda7acf0d5d389
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f3bfc4b56f559fdc845ad109a6dafcdcb89fea2436fe799f5050b9ebefa19311
[INFO] running `Command { std: "docker" "start" "-a" "f3bfc4b56f559fdc845ad109a6dafcdcb89fea2436fe799f5050b9ebefa19311", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling crispyr v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 4.48s
[INFO] running `Command { std: "docker" "inspect" "f3bfc4b56f559fdc845ad109a6dafcdcb89fea2436fe799f5050b9ebefa19311", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f3bfc4b56f559fdc845ad109a6dafcdcb89fea2436fe799f5050b9ebefa19311", kill_on_drop: false }`
[INFO] [stdout] f3bfc4b56f559fdc845ad109a6dafcdcb89fea2436fe799f5050b9ebefa19311
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 7ac873b28726c07f4be54bcd0b1876e5bd7098a638c7e012cb5287039b37784f
[INFO] running `Command { std: "docker" "start" "-a" "7ac873b28726c07f4be54bcd0b1876e5bd7098a638c7e012cb5287039b37784f", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/crispyr-132d24bbc5b44020)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/crispyr-1f535132430699bc)
[INFO] [stdout] 
[INFO] [stderr]      Running tests/enzyme.rs (/opt/rustwide/target/debug/deps/enzyme-abe8e36fb081bb8a)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test test_enzyme_mad7 ... ok
[INFO] [stdout] test test_enzyme_cas9 ... ok
[INFO] [stdout] test test_enzyme_unknown ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/index.rs (/opt/rustwide/target/debug/deps/index-9b5d04caf0058be4)
[INFO] [stdout] 
[INFO] [stdout] running 12 tests
[INFO] [stdout] test test_position_to_u64_reverse_neg_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_neg_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_ref_no_pos ... ok
[INFO] [stdout] test test_position_to_u64_reverse_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_zeroes ... ok
[INFO] [stdout] test test_position_to_u64_forward_neg_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_zeroes ... ok
[INFO] [stdout] test test_position_to_u64_forward_ref_no_pos ... ok
[INFO] [stdout] test test_position_to_u64_reverse_neg_pos_no_ref ... ok
[INFO] [stdout] test test_position_to_u64_reverse_pos_and_ref ... ok
[INFO] [stdout] test test_position_to_u64_forward_pos_no_ref ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/iupac.rs (/opt/rustwide/target/debug/deps/iupac-cd857197603cf6c0)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stderr]      Running tests/pam.rs (/opt/rustwide/target/debug/deps/pam-92655d424c4e3a39)
[INFO] [stdout] test test_basic_nucleotides ... ok
[INFO] [stdout] test test_non_nucleotide_values ... ok
[INFO] [stdout] test test_degenerate_nucleotide ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test test_enzyme_kmer_mut_mad7 ... ok
[INFO] [stdout] test test_head_kmer ... ok
[INFO] [stdout] test test_pam_position ... ok
[INFO] [stdout] test test_enzyme_kmer_mad7 ... ok
[INFO] [stdout] test test_head_pam_matches ... ok
[INFO] [stdout] test test_empty_tail_pam_kmer_slice ... ok
[INFO] [stdout] test test_empty_tail_pam_matches ... ok
[INFO] [stdout] test test_empty_head_pam_matches ... ok
[INFO] [stdout] test test_enzyme_kmer_mut_cas9 ... ok
[INFO] [stdout] test test_pam_lengths ... ok
[INFO] [stdout] test test_empty_head_pam_kmer_slice ... ok
[INFO] [stderr]    Doc-tests crispyr
[INFO] [stdout] test test_tail_pam_matches ... ok
[INFO] [stdout] test test_enzyme_kmer_cas9 ... ok
[INFO] [stdout] test test_to_string ... ok
[INFO] [stdout] test test_tail_kmer ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "7ac873b28726c07f4be54bcd0b1876e5bd7098a638c7e012cb5287039b37784f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7ac873b28726c07f4be54bcd0b1876e5bd7098a638c7e012cb5287039b37784f", kill_on_drop: false }`
[INFO] [stdout] 7ac873b28726c07f4be54bcd0b1876e5bd7098a638c7e012cb5287039b37784f