[INFO] cloning repository https://github.com/clinico-omics/omics-tools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clinico-omics/omics-tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 225d596d6872b010a31f9f8703e5294decfa73ef
[INFO] testing clinico-omics/omics-tools against beta-2021-09-08 for beta-1.56-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclinico-omics%2Fomics-tools" "/workspace/builds/worker-7/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/clinico-omics/omics-tools on toolchain beta-2021-09-08
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] removed /workspace/builds/worker-7/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/clinico-omics/omics-tools
[INFO] finished tweaking git repo https://github.com/clinico-omics/omics-tools
[INFO] tweaked toml for git repo https://github.com/clinico-omics/omics-tools written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate git repo https://github.com/clinico-omics/omics-tools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-7/source/bam-util/Cargo.toml
[INFO] [stderr] workspace: /workspace/builds/worker-7/source/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /workspace/builds/worker-7/source/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /workspace/builds/worker-7/source/Cargo.toml
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded cloudflare-zlib-sys v0.2.0
[INFO] [stderr]   Downloaded vcf v0.5.0
[INFO] [stderr]   Downloaded rust-htslib v0.35.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 12e504eb7ef64eef0efd097b6b145b88dfa8f7397bb5e4bc22998f17165fe17e
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "12e504eb7ef64eef0efd097b6b145b88dfa8f7397bb5e4bc22998f17165fe17e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "12e504eb7ef64eef0efd097b6b145b88dfa8f7397bb5e4bc22998f17165fe17e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "12e504eb7ef64eef0efd097b6b145b88dfa8f7397bb5e4bc22998f17165fe17e", kill_on_drop: false }`
[INFO] [stdout] 12e504eb7ef64eef0efd097b6b145b88dfa8f7397bb5e4bc22998f17165fe17e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1a90021c152ad6a824e76b32306412e10532def48c14f40bd834becae57244df
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "1a90021c152ad6a824e76b32306412e10532def48c14f40bd834becae57244df", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bam-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr]    Compiling syn v1.0.72
[INFO] [stderr]    Compiling object v0.24.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling addr2line v0.15.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling thread_local v0.3.4
[INFO] [stderr]    Compiling jobserver v0.1.22
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling hashlink v0.6.0
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling cc v1.0.67
[INFO] [stderr]    Compiling openssl-src v111.15.0+1.1.1k
[INFO] [stderr]    Compiling stderrlog v0.4.3
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.10+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.43+curl-7.76.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling backtrace v0.3.59
[INFO] [stderr]    Compiling cloudflare-zlib-sys v0.2.0
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
[INFO] [stderr]    Compiling libsqlite3-sys v0.20.1
[INFO] [stderr]    Compiling openssl-sys v0.9.63
[INFO] [stderr]    Compiling flate2 v1.0.20
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.24
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling failure v0.1.8
[INFO] [stderr]    Compiling vcf v0.5.0
[INFO] [stderr]    Compiling rusqlite v0.24.2
[INFO] [stderr]    Compiling thiserror v1.0.24
[INFO] [stderr]    Compiling bio-types v0.11.0
[INFO] [stderr]    Compiling structopt v0.3.21
[INFO] [stderr]    Compiling vcf-util v0.1.0 (/opt/rustwide/workdir/vcf-util)
[INFO] [stdout] warning: function is never used: `infer_format_schema`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:106:4
[INFO] [stdout]     |
[INFO] [stdout] 106 | fn infer_format_schema<R: BufRead>(reader: &VCFReader<R>) -> HashMap<String, String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `f64_into_vec_u8`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:159:4
[INFO] [stdout]     |
[INFO] [stdout] 159 | fn f64_into_vec_u8(value: std::option::Option<f64>) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> vcf-util/src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> vcf-util/src/main.rs:5:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling rust-htslib v0.35.2
[INFO] [stderr]    Compiling bam-util v0.1.0 (/opt/rustwide/workdir/bam-util)
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> bam-util/src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> bam-util/src/main.rs:5:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 24s
[INFO] running `Command { std: "docker" "inspect" "1a90021c152ad6a824e76b32306412e10532def48c14f40bd834becae57244df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1a90021c152ad6a824e76b32306412e10532def48c14f40bd834becae57244df", kill_on_drop: false }`
[INFO] [stdout] 1a90021c152ad6a824e76b32306412e10532def48c14f40bd834becae57244df
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f15cb458d8dd555ef6f1f6d24b7f09f36744fc7ef99a51bd0076f10f279978eb
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f15cb458d8dd555ef6f1f6d24b7f09f36744fc7ef99a51bd0076f10f279978eb", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bam-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr]    Compiling vcf-util v0.1.0 (/opt/rustwide/workdir/vcf-util)
[INFO] [stderr]    Compiling bam-util v0.1.0 (/opt/rustwide/workdir/bam-util)
[INFO] [stdout] warning: function is never used: `infer_format_schema`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:106:4
[INFO] [stdout]     |
[INFO] [stdout] 106 | fn infer_format_schema<R: BufRead>(reader: &VCFReader<R>) -> HashMap<String, String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `f64_into_vec_u8`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:159:4
[INFO] [stdout]     |
[INFO] [stdout] 159 | fn f64_into_vec_u8(value: std::option::Option<f64>) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> bam-util/src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> bam-util/src/main.rs:5:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> vcf-util/src/main.rs:2:1
[INFO] [stdout]   |
[INFO] [stdout] 2 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused `#[macro_use]` import
[INFO] [stdout]  --> vcf-util/src/main.rs:5:1
[INFO] [stdout]   |
[INFO] [stdout] 5 | #[macro_use]
[INFO] [stdout]   | ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `infer_format_schema`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:106:4
[INFO] [stdout]     |
[INFO] [stdout] 106 | fn infer_format_schema<R: BufRead>(reader: &VCFReader<R>) -> HashMap<String, String> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function is never used: `f64_into_vec_u8`
[INFO] [stdout]    --> vcf-util/src/vcf/convertor.rs:159:4
[INFO] [stdout]     |
[INFO] [stdout] 159 | fn f64_into_vec_u8(value: std::option::Option<f64>) -> Vec<u8> {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.85s
[INFO] running `Command { std: "docker" "inspect" "f15cb458d8dd555ef6f1f6d24b7f09f36744fc7ef99a51bd0076f10f279978eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f15cb458d8dd555ef6f1f6d24b7f09f36744fc7ef99a51bd0076f10f279978eb", kill_on_drop: false }`
[INFO] [stdout] f15cb458d8dd555ef6f1f6d24b7f09f36744fc7ef99a51bd0076f10f279978eb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] b7fc45c46d55a410c45cc6fcafce291ffb3e00e5d7977d962765bf217e83c33a
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "b7fc45c46d55a410c45cc6fcafce291ffb3e00e5d7977d962765bf217e83c33a", kill_on_drop: false }`
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/bam-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: profiles for the non root package will be ignored, specify profiles at the workspace root:
[INFO] [stderr] package:   /opt/rustwide/workdir/vcf-util/Cargo.toml
[INFO] [stderr] workspace: /opt/rustwide/workdir/Cargo.toml
[INFO] [stderr] warning: function is never used: `infer_format_schema`
[INFO] [stderr]    --> vcf-util/src/vcf/convertor.rs:106:4
[INFO] [stderr]     |
[INFO] [stderr] 106 | fn infer_format_schema<R: BufRead>(reader: &VCFReader<R>) -> HashMap<String, String> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: function is never used: `f64_into_vec_u8`
[INFO] [stderr]    --> vcf-util/src/vcf/convertor.rs:159:4
[INFO] [stderr]     |
[INFO] [stderr] 159 | fn f64_into_vec_u8(value: std::option::Option<f64>) -> Vec<u8> {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `vcf-util` (lib) generated 2 warnings
[INFO] [stderr] warning: `vcf-util` (lib test) generated 2 warnings (2 duplicates)
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> vcf-util/src/main.rs:2:1
[INFO] [stderr]   |
[INFO] [stderr] 2 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> vcf-util/src/main.rs:5:1
[INFO] [stderr]   |
[INFO] [stderr] 5 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `vcf-util` (bin "vcf-util" test) generated 2 warnings
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> bam-util/src/main.rs:2:1
[INFO] [stderr]   |
[INFO] [stderr] 2 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused `#[macro_use]` import
[INFO] [stderr]  --> bam-util/src/main.rs:5:1
[INFO] [stderr]   |
[INFO] [stderr] 5 | #[macro_use]
[INFO] [stderr]   | ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `bam-util` (bin "bam-util" test) generated 2 warnings
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.09s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bam_util-69f41ad311d9c647)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/bam_util-97c6036509494756)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/vcf_util-860393504a25b219)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/vcf_util-da98477b31dc427a)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bam_util
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21) stdout ----
[INFO] [stdout] error[E0425]: cannot find function `remove_whitespace` in this scope
[INFO] [stdout]  --> src/bam/cigar.rs:22:15
[INFO] [stdout]   |
[INFO] [stdout] 3 | let removed = remove_whitespace("  each(S) && all(M)");
[INFO] [stdout]   |               ^^^^^^^^^^^^^^^^^ not found in this scope
[INFO] [stdout]   |
[INFO] [stdout] help: consider importing this function
[INFO] [stdout]   |
[INFO] [stdout] 2 | use bam_util::bam::cigar::remove_whitespace;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0425`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/bam/cigar.rs - bam::cigar::remove_whitespace (line 21)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.53s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass '--doc'
[INFO] running `Command { std: "docker" "inspect" "b7fc45c46d55a410c45cc6fcafce291ffb3e00e5d7977d962765bf217e83c33a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b7fc45c46d55a410c45cc6fcafce291ffb3e00e5d7977d962765bf217e83c33a", kill_on_drop: false }`
[INFO] [stdout] b7fc45c46d55a410c45cc6fcafce291ffb3e00e5d7977d962765bf217e83c33a