[INFO] cloning repository https://github.com/HeshamElAbd/ppgg_rust [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HeshamElAbd/ppgg_rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHeshamElAbd%2Fppgg_rust", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHeshamElAbd%2Fppgg_rust'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] a41c4ead23432f0830655e0b497a049bf335e718 [INFO] testing HeshamElAbd/ppgg_rust against beta-2021-09-08 for beta-1.56-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHeshamElAbd%2Fppgg_rust" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/HeshamElAbd/ppgg_rust on toolchain beta-2021-09-08 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/HeshamElAbd/ppgg_rust [INFO] finished tweaking git repo https://github.com/HeshamElAbd/ppgg_rust [INFO] tweaked toml for git repo https://github.com/HeshamElAbd/ppgg_rust written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/HeshamElAbd/ppgg_rust already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-09-08" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] bd6a63fc05949119d2117a2ae7437de210966677ef1db2519d7a33586719cedb [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "bd6a63fc05949119d2117a2ae7437de210966677ef1db2519d7a33586719cedb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "bd6a63fc05949119d2117a2ae7437de210966677ef1db2519d7a33586719cedb", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bd6a63fc05949119d2117a2ae7437de210966677ef1db2519d7a33586719cedb", kill_on_drop: false }` [INFO] [stdout] bd6a63fc05949119d2117a2ae7437de210966677ef1db2519d7a33586719cedb [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 95c8ea60ea97e4c4ef9ab0e177c795b87abddbbf1c04e6722d65412e7c5c3f1f [INFO] running `Command { std: "docker" "start" "-a" "95c8ea60ea97e4c4ef9ab0e177c795b87abddbbf1c04e6722d65412e7c5c3f1f", kill_on_drop: false }` [INFO] [stderr] Compiling ppgg_rust v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variant is never constructed: `MisSense` [INFO] [stdout] --> src/data_structures.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | MisSense, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `InframeInsertion` [INFO] [stdout] --> src/data_structures.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | InframeInsertion, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `InframeDeletion` [INFO] [stdout] --> src/data_structures.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | InframeDeletion, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `FrameShift` [INFO] [stdout] --> src/data_structures.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | FrameShift, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `StopGain` [INFO] [stdout] --> src/data_structures.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | StopGain, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `StopLost` [INFO] [stdout] --> src/data_structures.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | StopLost [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: associated function is never used: `new` [INFO] [stdout] --> src/data_structures.rs:55:12 [INFO] [stdout] | [INFO] [stdout] 55 | pub fn new(ref_aa_position:u16, mut_aa_position:u16,ref_aa:String,mut_aa:String)->MutationInfo [INFO] [stdout] | ^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `Mutation` [INFO] [stdout] --> src/data_structures.rs:68:12 [INFO] [stdout] | [INFO] [stdout] 68 | pub struct Mutation [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `split_csq_string` [INFO] [stdout] --> src/functions.rs:20:12 [INFO] [stdout] | [INFO] [stdout] 20 | pub fn split_csq_string(input_string:String, )->Result,String> [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `parse_amino_acid_field` [INFO] [stdout] --> src/functions.rs:55:12 [INFO] [stdout] | [INFO] [stdout] 55 | pub fn parse_amino_acid_field(input_string:String)->Result [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function is never used: `parse_amino_acid_seq_position` [INFO] [stdout] --> src/functions.rs:98:12 [INFO] [stdout] | [INFO] [stdout] 98 | pub fn parse_amino_acid_seq_position(input_seq: &str)->Result<(u16,String),String> [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 11 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1.95s [INFO] running `Command { std: "docker" "inspect" "95c8ea60ea97e4c4ef9ab0e177c795b87abddbbf1c04e6722d65412e7c5c3f1f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "95c8ea60ea97e4c4ef9ab0e177c795b87abddbbf1c04e6722d65412e7c5c3f1f", kill_on_drop: false }` [INFO] [stdout] 95c8ea60ea97e4c4ef9ab0e177c795b87abddbbf1c04e6722d65412e7c5c3f1f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 24177fd71ae15f2882f1df0151811d49f0f149b8daf21a665549231473835ed3 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "24177fd71ae15f2882f1df0151811d49f0f149b8daf21a665549231473835ed3", kill_on_drop: false }` [INFO] [stderr] Compiling ppgg_rust v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused variable: `error` [INFO] [stdout] --> src/functions.rs:158:17 [INFO] [stdout] | [INFO] [stdout] 158 | Err(error)=> [INFO] [stdout] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_error` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `MisSense` [INFO] [stdout] --> src/data_structures.rs:5:5 [INFO] [stdout] | [INFO] [stdout] 5 | MisSense, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `InframeInsertion` [INFO] [stdout] --> src/data_structures.rs:6:5 [INFO] [stdout] | [INFO] [stdout] 6 | InframeInsertion, [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `InframeDeletion` [INFO] [stdout] --> src/data_structures.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | InframeDeletion, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `FrameShift` [INFO] [stdout] --> src/data_structures.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | FrameShift, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `StopGain` [INFO] [stdout] --> src/data_structures.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | StopGain, [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variant is never constructed: `StopLost` [INFO] [stdout] --> src/data_structures.rs:10:5 [INFO] [stdout] | [INFO] [stdout] 10 | StopLost [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct is never constructed: `Mutation` [INFO] [stdout] --> src/data_structures.rs:68:12 [INFO] [stdout] | [INFO] [stdout] 68 | pub struct Mutation [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 8 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.82s [INFO] running `Command { std: "docker" "inspect" "24177fd71ae15f2882f1df0151811d49f0f149b8daf21a665549231473835ed3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "24177fd71ae15f2882f1df0151811d49f0f149b8daf21a665549231473835ed3", kill_on_drop: false }` [INFO] [stdout] 24177fd71ae15f2882f1df0151811d49f0f149b8daf21a665549231473835ed3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-09-08" "test" "--frozen", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] d39cfe5f46864b7a5de7b8a6ffc80364c54a8e71ff621b6f46e3d2bba466d130 [INFO] running `Command { std: "docker" "start" "-a" "d39cfe5f46864b7a5de7b8a6ffc80364c54a8e71ff621b6f46e3d2bba466d130", kill_on_drop: false }` [INFO] [stderr] warning: unused variable: `error` [INFO] [stderr] --> src/functions.rs:158:17 [INFO] [stderr] | [INFO] [stderr] 158 | Err(error)=> [INFO] [stderr] | ^^^^^ help: if this is intentional, prefix it with an underscore: `_error` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_variables)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `MisSense` [INFO] [stderr] --> src/data_structures.rs:5:5 [INFO] [stderr] | [INFO] [stderr] 5 | MisSense, [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(dead_code)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `InframeInsertion` [INFO] [stderr] --> src/data_structures.rs:6:5 [INFO] [stderr] | [INFO] [stderr] 6 | InframeInsertion, [INFO] [stderr] | ^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `InframeDeletion` [INFO] [stderr] --> src/data_structures.rs:7:5 [INFO] [stderr] | [INFO] [stderr] 7 | InframeDeletion, [INFO] [stderr] | ^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `FrameShift` [INFO] [stderr] --> src/data_structures.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | FrameShift, [INFO] [stderr] | ^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `StopGain` [INFO] [stderr] --> src/data_structures.rs:9:5 [INFO] [stderr] | [INFO] [stderr] 9 | StopGain, [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variant is never constructed: `StopLost` [INFO] [stderr] --> src/data_structures.rs:10:5 [INFO] [stderr] | [INFO] [stderr] 10 | StopLost [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: struct is never constructed: `Mutation` [INFO] [stderr] --> src/data_structures.rs:68:12 [INFO] [stderr] | [INFO] [stderr] 68 | pub struct Mutation [INFO] [stderr] | ^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: `ppgg_rust` (bin "ppgg_rust" test) generated 8 warnings [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.01s [INFO] [stdout] [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/ppgg_rust-1d62afd62f1518ea) [INFO] [stdout] running 14 tests [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_field_1 ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_seq_position ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_seq_position_bad_input_3 ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_seq_position_rare_input_1 ... ok [INFO] [stdout] test functions::test_text_parser::test_split_csq_string_one ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_seq_position_rare_input_2 ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_field_4 ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_seq_position_bad_input_1 ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_seq_position_bugged_input ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_seq_position_bad_input_2 ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_field_2 ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_field_3 ... ok [INFO] [stdout] test functions::test_text_parser::test_split_csq_string_two ... ok [INFO] [stdout] test functions::test_text_parser::test_parse_amino_acid_seq_position_indepth ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 14 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.13s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "d39cfe5f46864b7a5de7b8a6ffc80364c54a8e71ff621b6f46e3d2bba466d130", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "d39cfe5f46864b7a5de7b8a6ffc80364c54a8e71ff621b6f46e3d2bba466d130", kill_on_drop: false }` [INFO] [stdout] d39cfe5f46864b7a5de7b8a6ffc80364c54a8e71ff621b6f46e3d2bba466d130