[INFO] fetching crate segul 0.8.3...
[INFO] testing segul-0.8.3 against 1.55.0 for beta-1.56-1
[INFO] extracting crate segul 0.8.3 into /workspace/builds/worker-90/source
[INFO] validating manifest of crates.io crate segul 0.8.3 on toolchain 1.55.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate segul 0.8.3
[INFO] finished tweaking crates.io crate segul 0.8.3
[INFO] tweaked toml for crates.io crate segul 0.8.3 written to /workspace/builds/worker-90/source/Cargo.toml
[INFO] crate crates.io crate segul 0.8.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded alphanumeric-sort v1.4.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 0f03cde835fa9d8bb217b250ed56d86c6b415f176bfe20f699a6132d598589d7
[INFO] running `Command { std: "docker" "start" "-a" "0f03cde835fa9d8bb217b250ed56d86c6b415f176bfe20f699a6132d598589d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "0f03cde835fa9d8bb217b250ed56d86c6b415f176bfe20f699a6132d598589d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0f03cde835fa9d8bb217b250ed56d86c6b415f176bfe20f699a6132d598589d7", kill_on_drop: false }`
[INFO] [stdout] 0f03cde835fa9d8bb217b250ed56d86c6b415f176bfe20f699a6132d598589d7
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 21d6b4c99a92cc802291f9d3edbcdb0dd989f02966b7dc5b510775d25dc60a2c
[INFO] running `Command { std: "docker" "start" "-a" "21d6b4c99a92cc802291f9d3edbcdb0dd989f02966b7dc5b510775d25dc60a2c", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.98
[INFO] [stderr]    Compiling proc-macro2 v1.0.28
[INFO] [stderr]    Compiling syn v1.0.74
[INFO] [stderr]    Compiling serde_derive v1.0.126
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling serde v1.0.126
[INFO] [stderr]    Compiling version_check v0.9.3
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling regex-syntax v0.6.25
[INFO] [stderr]    Compiling radium v0.5.3
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling ppv-lite86 v0.2.10
[INFO] [stderr]    Compiling linked-hash-map v0.5.4
[INFO] [stderr]    Compiling serde_json v1.0.66
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling smallvec v1.6.1
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]    Compiling anyhow v1.0.42
[INFO] [stderr]    Compiling itoa v0.4.7
[INFO] [stderr]    Compiling funty v1.1.0
[INFO] [stderr]    Compiling arrayvec v0.5.2
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling tap v1.0.1
[INFO] [stderr]    Compiling static_assertions v1.1.0
[INFO] [stderr]    Compiling nodrop v0.1.14
[INFO] [stderr]    Compiling wyz v0.2.0
[INFO] [stderr]    Compiling dtoa v0.4.8
[INFO] [stderr]    Compiling arc-swap v0.4.8
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling once_cell v1.8.0
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling zeroize v1.4.1
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling alphanumeric-sort v1.4.3
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling instant v0.1.10
[INFO] [stderr]    Compiling indexmap v1.6.2
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling lock_api v0.4.4
[INFO] [stderr]    Compiling yaml-rust v0.4.5
[INFO] [stderr]    Compiling ahash v0.7.4
[INFO] [stderr]    Compiling nom v6.2.1
[INFO] [stderr]    Compiling crossbeam-channel v0.5.1
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling bitvec v0.19.5
[INFO] [stderr]    Compiling num-format v0.4.0
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling getrandom v0.2.3
[INFO] [stderr]    Compiling terminal_size v0.1.17
[INFO] [stderr]    Compiling parking_lot_core v0.8.3
[INFO] [stderr]    Compiling time v0.1.43
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling thread-id v3.3.0
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling rand_core v0.6.3
[INFO] [stderr]    Compiling parking_lot v0.11.1
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling ordered-float v2.7.0
[INFO] [stderr]    Compiling rand v0.8.4
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling regex v1.4.6
[INFO] [stderr]    Compiling tempfile v3.2.0
[INFO] [stderr]    Compiling console v0.14.1
[INFO] [stderr]    Compiling indicatif v0.16.2
[INFO] [stderr]    Compiling dialoguer v0.8.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling derivative v2.2.0
[INFO] [stderr]    Compiling thiserror v1.0.26
[INFO] [stderr]    Compiling serde_yaml v0.8.17
[INFO] [stderr]    Compiling serde-value v0.7.0
[INFO] [stderr]    Compiling log4rs v1.0.0
[INFO] [stderr]    Compiling segul v0.8.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 32.77s
[INFO] running `Command { std: "docker" "inspect" "21d6b4c99a92cc802291f9d3edbcdb0dd989f02966b7dc5b510775d25dc60a2c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "21d6b4c99a92cc802291f9d3edbcdb0dd989f02966b7dc5b510775d25dc60a2c", kill_on_drop: false }`
[INFO] [stdout] 21d6b4c99a92cc802291f9d3edbcdb0dd989f02966b7dc5b510775d25dc60a2c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 5a5c5a9dce4a729f002bae1a00486ad9ea6a8ae5cee6298b24baa651844c2c8e
[INFO] running `Command { std: "docker" "start" "-a" "5a5c5a9dce4a729f002bae1a00486ad9ea6a8ae5cee6298b24baa651844c2c8e", kill_on_drop: false }`
[INFO] [stderr]    Compiling segul v0.8.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 7.59s
[INFO] running `Command { std: "docker" "inspect" "5a5c5a9dce4a729f002bae1a00486ad9ea6a8ae5cee6298b24baa651844c2c8e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5a5c5a9dce4a729f002bae1a00486ad9ea6a8ae5cee6298b24baa651844c2c8e", kill_on_drop: false }`
[INFO] [stdout] 5a5c5a9dce4a729f002bae1a00486ad9ea6a8ae5cee6298b24baa651844c2c8e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-90/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d02b1ab57e84cd5bbd284adf1a81ecf3921eb88a9990d51afe62b7e4ed549882
[INFO] running `Command { std: "docker" "start" "-a" "d02b1ab57e84cd5bbd284adf1a81ecf3921eb88a9990d51afe62b7e4ed549882", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.43s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/segul-e0e30cb050f03f17)
[INFO] [stdout] 
[INFO] [stdout] running 57 tests
[INFO] [stdout] test helper::alphabet::test::check_invalid_dna_test ... ok
[INFO] [stdout] test helper::alphabet::test::check_valid_dna_test ... ok
[INFO] [stdout] test core::msa::test::get_gaps_test ... ok
[INFO] [stdout] test helper::finder::test::get_files_test ... ok
[INFO] [stdout] test helper::stats::test::pattern_count_test ... ok
[INFO] [stdout] test helper::stats::test::dna_count_test ... ok
[INFO] [stdout] test helper::stats::test::count_variable_sites_test ... ok
[INFO] [stdout] test helper::stats::test::filter_min_tax_test ... ok
[INFO] [stdout] test helper::stats::test::count_parsimony_gap_test ... ok
[INFO] [stdout] test helper::stats::test::count_parsimony_test ... ok
[INFO] [stdout] test helper::utils::test::time_parsing_test ... ok
[INFO] [stdout] test parser::fasta::test::check_is_alignment_test ... ok
[INFO] [stdout] test helper::stats::test::get_site_stats_test ... ok
[INFO] [stdout] test parser::fasta::test::interleaved_fas_test ... ok
[INFO] [stdout] test parser::nexus::test::nexus_parse_ntax_test ... ok
[INFO] [stdout] test parser::fasta::test::simple_aa_fas_test ... ok
[INFO] [stdout] test parser::fasta::test::read_fasta_simple_test ... ok
[INFO] [stdout] test cli::filter::test::test_min_taxa_output_dir ... ok
[INFO] [stdout] test cli::filter::test::test_min_taxa ... ok
[INFO] [stdout] test parser::fasta::test::check_isnot_alignment_test ... ok
[INFO] [stdout] test parser::phylip::test::parse_matrix_interleave_phylip_test ... ok
[INFO] [stdout] test parser::phylip::test::phylip_simple_aa_test ... ok
[INFO] [stdout] test parser::phylip::test::parse_phylip_header_test ... ok
[INFO] [stdout] test parser::phylip::test::read_phylip_simple_test ... ok
[INFO] [stdout] test parser::phylip::test::read_interleave_phylip_test ... ok
[INFO] [stdout] test parser::phylip::test::read_interleave_phylip_id_test ... ok
[INFO] [stdout] test parser::phylip::test::read_phylip_whitespace_test ... ok
[INFO] [stdout] test writer::sequences::test::chunk_seq_test ... ok
[INFO] [stdout] test writer::sequences::test::insert_whitespaces_test ... ok
[INFO] [stdout] test parser::phylip::test::reade_int_phylip_whitespaces_test ... ok
[INFO] [stdout] test writer::sequences::test::matrix_int_test ... ok
[INFO] [stdout] test helper::sequence::test::alignment_simple_test ... ok
[INFO] [stdout] test parser::nexus::test::nexus_reading_tabulated_test ... ok
[INFO] [stdout] test parser::nexus::test::regex_command_test ... ok
[INFO] [stdout] test parser::nexus::test::check_match_ntax_test ... ok
[INFO] [stdout] test parser::nexus::test::nexus_reading_simple_test ... ok
[INFO] [stdout] test parser::nexus::test::nexus_parsing_object_test ... ok
[INFO] [stdout] test parser::nexus::test::nexus_parse_interleave ... ok
[INFO] [stdout] test parser::nexus::test::nexus_simple_aa_test ... ok
[INFO] [stdout] test core::filter::test::test_min_pinf ... ok
[INFO] [stdout] test parser::nexus::test::nexus_parse_interleave_res_test ... ok
[INFO] [stdout] test parser::nexus::test::nexus_sequence_test ... ok
[INFO] [stdout] test parser::nexus::test::nexus_reading_complete_test ... ok
[INFO] [stdout] test helper::finder::test::id_test ... ok
[INFO] [stdout] test core::msa::test::concat_check_result_test ... ok
[INFO] [stdout] test core::msa::test::concat_partition_test ... ok
[INFO] [stdout] test core::msa::test::concat_nexus_test ... ok
[INFO] [stdout] test helper::alphabet::test::check_invalid_dna_panic_test - should panic ... ok
[INFO] [stdout] test helper::finder::test::check_empty_files_test - should panic ... ok
[INFO] [stdout] test core::msa::test::get_alignment_panic_test - should panic ... ok
[INFO] [stdout] test parser::nexus::test::check_invalid_nexus_test - should panic ... ok
[INFO] [stdout] test parser::phylip::test::read_interleave_phylip_panic_test - should panic ... ok
[INFO] [stdout] test parser::phylip::test::read_phylip_invalid_test - should panic ... ok
[INFO] [stdout] test parser::nexus::test::nexus_duplicate_panic_test - should panic ... ok
[INFO] [stdout] test parser::nexus::test::check_match_ntax_panic_test - should panic ... ok
[INFO] [stdout] test parser::nexus::test::nexus_space_panic_test - should panic ... ok
[INFO] [stdout] test parser::nexus::test::nexus_id_duplicate_panic_test - should panic ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 57 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.56s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "d02b1ab57e84cd5bbd284adf1a81ecf3921eb88a9990d51afe62b7e4ed549882", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d02b1ab57e84cd5bbd284adf1a81ecf3921eb88a9990d51afe62b7e4ed549882", kill_on_drop: false }`
[INFO] [stdout] d02b1ab57e84cd5bbd284adf1a81ecf3921eb88a9990d51afe62b7e4ed549882