[INFO] fetching crate rustybam 0.1.5...
[INFO] testing rustybam-0.1.5 against 1.55.0 for beta-1.56-1
[INFO] extracting crate rustybam 0.1.5 into /workspace/builds/worker-7/source
[INFO] validating manifest of crates.io crate rustybam 0.1.5 on toolchain 1.55.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate rustybam 0.1.5
[INFO] finished tweaking crates.io crate rustybam 0.1.5
[INFO] tweaked toml for crates.io crate rustybam 0.1.5 written to /workspace/builds/worker-7/source/Cargo.toml
[INFO] crate crates.io crate rustybam 0.1.5 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f0440cfcc4f97602b324d45fac0de99712abd05fdf3f906aec204bb79b683075
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f0440cfcc4f97602b324d45fac0de99712abd05fdf3f906aec204bb79b683075", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f0440cfcc4f97602b324d45fac0de99712abd05fdf3f906aec204bb79b683075", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f0440cfcc4f97602b324d45fac0de99712abd05fdf3f906aec204bb79b683075", kill_on_drop: false }`
[INFO] [stdout] f0440cfcc4f97602b324d45fac0de99712abd05fdf3f906aec204bb79b683075
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0cac0b2faf7ab01e5cde648b7437d54409c3d20d10e564c110cb26de220706aa
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "0cac0b2faf7ab01e5cde648b7437d54409c3d20d10e564c110cb26de220706aa", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.99
[INFO] [stderr]    Compiling syn v1.0.74
[INFO] [stderr]    Compiling serde_derive v1.0.127
[INFO] [stderr]    Compiling serde v1.0.127
[INFO] [stderr]    Compiling memchr v2.4.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling strsim v0.10.0
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling os_str_bytes v3.1.0
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.34.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling ieee754 v0.2.6
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling strum v0.20.0
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling bimap v0.6.1
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling textwrap v0.14.2
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling itertools v0.10.1
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling generic-array v0.13.3
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling num-complex v0.3.1
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling crossbeam-deque v0.8.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling jobserver v0.1.23
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling cc v1.0.69
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling colored v2.0.0
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling openssl-src v111.15.0+1.1.1k
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]    Compiling libz-sys v1.1.3
[INFO] [stderr]    Compiling openssl-sys v0.9.65
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.45+curl-7.78.0
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix2
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling rand_distr v0.2.2
[INFO] [stderr]    Compiling nalgebra v0.19.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.4
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling calmio_filters v0.1.0
[INFO] [stderr]    Compiling calm_io v0.1.1
[INFO] [stderr]    Compiling enum-map v0.6.4
[INFO] [stderr]    Compiling thiserror v1.0.26
[INFO] [stderr]    Compiling bio-types v0.12.0
[INFO] [stderr]    Compiling statrs v0.13.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.16
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling clap v3.0.0-beta.4
[INFO] [stderr]    Compiling csv v1.1.6
[INFO] [stderr]    Compiling clap_generate v3.0.0-beta.4
[INFO] [stderr]    Compiling rustybam v0.1.5 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling rust-htslib v0.36.0
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 28s
[INFO] running `Command { std: "docker" "inspect" "0cac0b2faf7ab01e5cde648b7437d54409c3d20d10e564c110cb26de220706aa", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0cac0b2faf7ab01e5cde648b7437d54409c3d20d10e564c110cb26de220706aa", kill_on_drop: false }`
[INFO] [stdout] 0cac0b2faf7ab01e5cde648b7437d54409c3d20d10e564c110cb26de220706aa
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] f5e4e6e3e0cbbdf56f8a88eb67e23783a1a0f3bf29f11f63966f275cb99e9b65
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f5e4e6e3e0cbbdf56f8a88eb67e23783a1a0f3bf29f11f63966f275cb99e9b65", kill_on_drop: false }`
[INFO] [stderr]    Compiling rustybam v0.1.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 3.44s
[INFO] running `Command { std: "docker" "inspect" "f5e4e6e3e0cbbdf56f8a88eb67e23783a1a0f3bf29f11f63966f275cb99e9b65", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f5e4e6e3e0cbbdf56f8a88eb67e23783a1a0f3bf29f11f63966f275cb99e9b65", kill_on_drop: false }`
[INFO] [stdout] f5e4e6e3e0cbbdf56f8a88eb67e23783a1a0f3bf29f11f63966f275cb99e9b65
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 61f7c0763c8eb533c15275af52d1e3442b53d31d8abdce077475a618e91db7e8
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "61f7c0763c8eb533c15275af52d1e3442b53d31d8abdce077475a618e91db7e8", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.10s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/rustybam-1a9a0b8faf0a7aa7)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test liftover::tests::check_invertible ... ok
[INFO] [stdout] test annotate::tests::test_chrom_specific_overlaps ... ok
[INFO] [stdout] test suns::tests::test_convert ... ok
[INFO] [stdout] test suns::tests::test_sun_finding ... ok
[INFO] [stdout] test liftover::tests::test_aln_pair_liftover ... ok
[INFO] [stdout] test bamstats::tests::test_add_cigar_stats ... ok
[INFO] [stdout] test bamstats::tests::test_cigar_stats_from_test_file ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/rustybam-f893f44be0175212)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests rustybam
[INFO] [stdout] 
[INFO] [stdout] running 18 tests
[INFO] [stderr] error: test failed, to rerun pass '--doc'
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustdoc --edition=2018 --crate-type lib --crate-name rustybam --test /opt/rustwide/workdir/src/lib.rs -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps -L native=/opt/rustwide/target/debug/build/bzip2-sys-b656d8ac998e7233/out/lib -L native=/opt/rustwide/target/debug/build/curl-sys-195e8d182b1581e6/out/build -L native=/opt/rustwide/target/debug/build/hts-sys-4c0d428fc57d6dde/out -L native=/opt/rustwide/target/debug/build/libz-sys-5f1f04894b7b323f/out/lib -L native=/opt/rustwide/target/debug/build/lzma-sys-32bde3348b5e1336/out -L native=/opt/rustwide/target/debug/build/openssl-sys-3ad83a10551a7280/out/openssl-build/install/lib --extern bimap=/opt/rustwide/target/debug/deps/libbimap-4446b2282819d869.rlib --extern bio=/opt/rustwide/target/debug/deps/libbio-a400cb26101fd0b5.rlib --extern bio_types=/opt/rustwide/target/debug/deps/libbio_types-e5bd6de43b1e9f32.rlib --extern calm_io=/opt/rustwide/target/debug/deps/libcalm_io-d97dd0928e5648b7.rlib --extern clap=/opt/rustwide/target/debug/deps/libclap-fe1461c87f42b61f.rlib --extern colored=/opt/rustwide/target/debug/deps/libcolored-614569a5a9a89317.rlib --extern itertools=/opt/rustwide/target/debug/deps/libitertools-c0ea5b4b1d6f2c02.rlib --extern rayon=/opt/rustwide/target/debug/deps/librayon-3c934b469ddcd710.rlib --extern regex=/opt/rustwide/target/debug/deps/libregex-ba47a52faac36a33.rlib --extern rust_htslib=/opt/rustwide/target/debug/deps/librust_htslib-b83260f91c5b991b.rlib --extern rustybam=/opt/rustwide/target/debug/deps/librustybam-ca5423e752aa8b49.rlib -C embed-bitcode=no --error-format human` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "61f7c0763c8eb533c15275af52d1e3442b53d31d8abdce077475a618e91db7e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "61f7c0763c8eb533c15275af52d1e3442b53d31d8abdce077475a618e91db7e8", kill_on_drop: false }`
[INFO] [stdout] 61f7c0763c8eb533c15275af52d1e3442b53d31d8abdce077475a618e91db7e8