[INFO] fetching crate rust-htslib 0.38.2... [INFO] testing rust-htslib-0.38.2 against 1.55.0 for beta-1.56-1 [INFO] extracting crate rust-htslib 0.38.2 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate rust-htslib 0.38.2 on toolchain 1.55.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] removed /workspace/builds/worker-4/source/.cargo/config [INFO] started tweaking crates.io crate rust-htslib 0.38.2 [INFO] finished tweaking crates.io crate rust-htslib 0.38.2 [INFO] tweaked toml for crates.io crate rust-htslib 0.38.2 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2c57d968e3b42632e9279db5b657a11633c97b0e49ce3e33daf89472fd2403b4 [INFO] running `Command { std: "docker" "start" "-a" "2c57d968e3b42632e9279db5b657a11633c97b0e49ce3e33daf89472fd2403b4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2c57d968e3b42632e9279db5b657a11633c97b0e49ce3e33daf89472fd2403b4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2c57d968e3b42632e9279db5b657a11633c97b0e49ce3e33daf89472fd2403b4", kill_on_drop: false }` [INFO] [stdout] 2c57d968e3b42632e9279db5b657a11633c97b0e49ce3e33daf89472fd2403b4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 37b3c114361271ca5aab1af1a4053d116954ccfb751a1e38bd0506a755fab652 [INFO] running `Command { std: "docker" "start" "-a" "37b3c114361271ca5aab1af1a4053d116954ccfb751a1e38bd0506a755fab652", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.76 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling jobserver v0.1.24 [INFO] [stderr] Compiling cc v1.0.70 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling cmake v0.1.45 [INFO] [stderr] Compiling openssl-src v111.16.0+1.1.1l [INFO] [stderr] Compiling libz-sys v1.1.3 [INFO] [stderr] Compiling openssl-sys v0.9.66 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling curl-sys v0.4.45+curl-7.78.0 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling hts-sys v2.0.2 [INFO] [stderr] Compiling thiserror-impl v1.0.29 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling thiserror v1.0.29 [INFO] [stderr] Compiling bio-types v0.12.0 [INFO] [stderr] Compiling rust-htslib v0.38.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 32.92s [INFO] running `Command { std: "docker" "inspect" "37b3c114361271ca5aab1af1a4053d116954ccfb751a1e38bd0506a755fab652", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "37b3c114361271ca5aab1af1a4053d116954ccfb751a1e38bd0506a755fab652", kill_on_drop: false }` [INFO] [stdout] 37b3c114361271ca5aab1af1a4053d116954ccfb751a1e38bd0506a755fab652 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a9d836b65432475d6e8e86214402e7afea0d11ecef097d485ed52d52d81064ec [INFO] running `Command { std: "docker" "start" "-a" "a9d836b65432475d6e8e86214402e7afea0d11ecef097d485ed52d52d81064ec", kill_on_drop: false }` [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling pretty_assertions v0.6.1 [INFO] [stderr] Compiling rust-htslib v0.38.2 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 10.95s [INFO] running `Command { std: "docker" "inspect" "a9d836b65432475d6e8e86214402e7afea0d11ecef097d485ed52d52d81064ec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a9d836b65432475d6e8e86214402e7afea0d11ecef097d485ed52d52d81064ec", kill_on_drop: false }` [INFO] [stdout] a9d836b65432475d6e8e86214402e7afea0d11ecef097d485ed52d52d81064ec [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] b923d660407503ed13214616d971c1c0e6043da554307338a2ceacae975f3671 [INFO] running `Command { std: "docker" "start" "-a" "b923d660407503ed13214616d971c1c0e6043da554307338a2ceacae975f3671", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rust_htslib-b2d6f9ffbe50647a) [INFO] [stdout] [INFO] [stdout] running 118 tests [INFO] [stdout] test bam::buffer::tests::test_buffer ... ok [INFO] [stdout] test bam::ext::tests::spliced_reads ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar ... ok [INFO] [stdout] test bam::ext::tests::test_infer_seq_len ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_block_pairs ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar_parsing_non_ascii_error ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_cigar_parsing ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup ... ok [INFO] [stdout] test bam::record::tests::test_cigar_parse ... ok [INFO] [stdout] test bam::ext::tests::test_reference_start_end ... ok [INFO] [stdout] test bam::record::alignment_cigar_tests::test_read_orientation_f1r2 ... ok [INFO] [stdout] test bam::record::tests::test_cigar_string ... ok [INFO] [stdout] test bam::record::tests::test_flags ... ok [INFO] [stdout] test bam::record::tests::test_cigar_read_pos ... ok [INFO] [stdout] test bam::record::tests::test_clone ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_toml ... ok [INFO] [stdout] test bam::tests::test_aux_arrays ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions ... ok [INFO] [stdout] test bam::tests::test_aux_scalars ... ok [INFO] [stdout] test bam::tests::test_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_aux_array_partial_eq ... ok [INFO] [stdout] test bam::tests::parse_from_sam ... ok [INFO] [stdout] test bam::ext::tests::test_introns ... ok [INFO] [stdout] test bam::ext::tests::test_get_cigar_stats ... ok [INFO] [stdout] test bam::tests::test_compression_level_conversion ... ok [INFO] [stdout] test bam::ext::tests::test_aligned_pairs ... ok [INFO] [stdout] test bam::tests::test_indexde_bam_fails_on_vcf ... ok [INFO] [stdout] test bam::tests::test_set_record ... ok [INFO] [stderr] [E::hts_open_format] Failed to open file "./test/bam2sam_out.sam" : Read-only file system [INFO] [stdout] test bam::tests::test_set_repeated ... ok [INFO] [stdout] test bcf::record::tests::test_missing_float ... ok [INFO] [stdout] test bam::tests::test_set_qname2 ... ok [INFO] [stdout] test bam::tests::test_read_against_sam ... ok [INFO] [stdout] test bcf::record::tests::test_record_clear ... ok [INFO] [stdout] test bam::tests::test_remove_aux ... ok [INFO] [stdout] test bam::tests::test_set_qname ... ok [INFO] [stdout] test bam::tests::test_cigar_modes ... ok [INFO] [stdout] test bam::tests::test_read ... ok [INFO] [stdout] test bam::tests::test_rc_records ... ok [INFO] [stdout] test bam::tests::test_seek ... ok [INFO] [stdout] test bcf::record::tests::test_record_has_filter_custom ... ok [INFO] [stdout] test bam::tests::test_pileup ... ok [INFO] [stdout] test bcf::record::tests::test_record_has_filter_pass_is_default ... ok [INFO] [stdout] test bcf::record::tests::test_record_remove_filter ... ok [INFO] [stdout] test bcf::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test bcf::tests::test_fails_on_bam ... ok [INFO] [stdout] test bcf::tests::test_alt_allele_dosage ... ok [INFO] [stdout] test bam::tests::test_read_sam_header ... ok [INFO] [stdout] test bcf::record::tests::test_record_end ... ok [INFO] [stdout] test bcf::tests::test_genotype_allele_conversion ... ok [INFO] [stdout] test bcf::tests::test_genotype_missing_allele_conversion ... ok [INFO] [stdout] test bcf::record::tests::test_vector_end_float ... ok [INFO] [stderr] [W::vcf_parse] Contig '19' is not defined in the header. (Quick workaround: index the file with tabix.) [INFO] [stdout] test bcf::record::tests::test_record_push_filter ... ok [INFO] [stdout] test bcf::record::tests::test_record_rlen ... ok [INFO] [stdout] test bcf::tests::test_genotypes ... ok [INFO] [stdout] test bcf::tests::test_header_ids ... ok [INFO] [stdout] test bcf::tests::test_header_info_types ... ok [INFO] [stdout] test bcf::tests::test_header_records ... ok [INFO] [stdout] test bcf::tests::test_header_samples ... ok [INFO] [stdout] test bcf::tests::test_missing ... ok [INFO] [stdout] test bcf::tests::test_obs_cornercase ... ok [INFO] [stdout] test bcf::tests::test_strings ... ok [INFO] [stdout] test bam::tests::test_read_cram ... ok [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 3 after 0 of 4 bytes [INFO] [stdout] test bcf::tests::test_fetch_open_ended ... ok [INFO] [stdout] test bam::tests::test_copy_template ... ok [INFO] [stdout] test bcf::record::tests::test_record_set_filters ... ok [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 2 after 0 of 4 bytes [INFO] [stderr] [E::bgzf_read_block] Failed to read BGZF header at offset 426 [INFO] [stderr] [E::bgzf_read] Read block operation failed with error 3 after 0 of 4 bytes [INFO] [stdout] test bcf::tests::test_fetch_start_greater_than_last_vcf_pos ... ok [INFO] [stdout] test bam::tests::test_read_indexed_different_index_name ... ok [INFO] [stdout] test bcf::tests::test_svlen ... ok [INFO] [stdout] test bam::tests::test_read_indexed ... ok [INFO] [stdout] test bam::tests::test_bam_header_sync ... ok [INFO] [stdout] test bcf::tests::test_write_various ... ok [INFO] [stdout] test bcf::buffer::tests::test_buffer ... ok [INFO] [stdout] test bgzf::tests::test_is_bgzip_plain ... ok [INFO] [stdout] test bgzf::tests::test_open_gzip ... ok [INFO] [stdout] test bgzf::tests::test_open_plain ... ok [INFO] [stdout] test bcf::tests::test_remove_headers ... ok [INFO] [stdout] test bgzf::tests::test_open_bgzip ... ok [INFO] [stdout] test faidx::tests::faidx_position_too_large ... ok [INFO] [stdout] test faidx::tests::faidx_open ... ok [INFO] [stdout] test bcf::tests::test_synced_reader ... ok [INFO] [stdout] test bcf::tests::test_remove_alleles ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_between ... ok [INFO] [stderr] [E::idx_find_and_load] Could not retrieve index file for 'test/test_left.vcf' [INFO] [stdout] test faidx::tests::faidx_read_twice_bytes ... ok [INFO] [stdout] test tbx::tests::test_fails_on_vcf ... ok [INFO] [stderr] [E::hts_idx_load3] Could not load local index file 'test/tabix_reader/bad_header.txt.gz.tbi' [INFO] [stdout] test faidx::tests::faidx_read_twice_string ... ok [INFO] [stderr] [E::idx_find_and_load] Could not retrieve index file for 'test/test.bam' [INFO] [stdout] test tbx::tests::test_text_bad_header ... ok [INFO] [stdout] test tbx::tests::bed_basic ... ok [INFO] [stdout] test bam::tests::test_write_cram ... ok [INFO] [stdout] test tbx::tests::test_text_header_positions ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_iterator_api ... ok [INFO] [stdout] test bcf::tests::test_write ... ok [INFO] [stdout] test bcf::tests::test_read ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_start ... ok [INFO] [stdout] test tbx::tests::test_fails_on_non_existiant ... ok [INFO] [stdout] test tbx::tests::test_fails_on_bam ... ok [INFO] [stdout] test tbx::tests::bed_fetch_from_chr1_read_api ... ok [INFO] [stdout] test bcf::tests::test_header_contigs ... ok [INFO] [stdout] test bam::ext::tests::test_reference_positions_full ... ok [INFO] [stdout] test tbx::tests::test_text_header_regions ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_end ... ok [INFO] [stdout] test faidx::tests::faidx_read_chr_first_base ... ok [INFO] [stdout] test bgzf::tests::test_set_threadpool ... ok [INFO] [stdout] test bcf::tests::test_reader_set_threads ... ok [INFO] [stdout] test bam::tests::test_write ... ok [INFO] [stdout] test bcf::tests::test_synced_reader_fetch ... ok [INFO] [stdout] test bcf::tests::test_fetch_all ... ok [INFO] [stdout] test bcf::tests::test_writer_set_threads ... ok [INFO] [stdout] test bcf::tests::test_fetch ... ok [INFO] [stdout] test bam::tests::test_write_compression ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag ... ok [INFO] [stdout] test bcf::tests::test_multi_string_info_tag_number_a ... ok [INFO] [stdout] test bam::tests::test_idx_pileup ... ok [INFO] [stdout] test bam::pileup::tests::test_max_pileup_to_high - should panic ... ok [INFO] [stdout] test bam::index::tests::test_index_build ... FAILED [INFO] [stdout] test bam::tests::test_sam_writer_example ... FAILED [INFO] [stdout] test bam::ext::tests::test_aligned_pairs_full ... ok [INFO] [stdout] test bam::tests::test_write_threaded ... ok [INFO] [stdout] test bam::tests::test_write_shared_tpool ... ok [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- bam::index::tests::test_index_build stdout ---- [INFO] [stdout] thread 'bam::index::tests::test_index_build' panicked at 'called `Result::unwrap()` on an `Err` value: BamWriteIndex', src/bam/index.rs:72:51 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x557b57da5de0 - std::backtrace_rs::backtrace::libunwind::trace::ha0ad43e8a952bfe7 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x557b57da5de0 - std::backtrace_rs::backtrace::trace_unsynchronized::h6830419c0c4130dc [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x557b57da5de0 - std::sys_common::backtrace::_print_fmt::h8f3516631ffa1ef5 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x557b57da5de0 - ::fmt::he1640d5f0d93f618 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x557b57dca03c - core::fmt::write::h88012e1f01caeebf [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/fmt/mod.rs:1115:17 [INFO] [stdout] 5: 0x557b57da27a5 - std::io::Write::write_fmt::h7728c39ea5632753 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/io/mod.rs:1665:15 [INFO] [stdout] 6: 0x557b57da83db - std::sys_common::backtrace::_print::ha1f00492f406a015 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x557b57da83db - std::sys_common::backtrace::print::hd54561b13feb6af3 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x557b57da83db - std::panicking::default_hook::{{closure}}::h84fe124cd0864662 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x557b57da7eec - std::panicking::default_hook::h5a8e74a76ce290a7 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x557b57da8aa4 - std::panicking::rust_panic_with_hook::h67c812a4fe9d4c91 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x557b57da8587 - std::panicking::begin_panic_handler::{{closure}}::h33f9c1b96af300d7 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x557b57da62dc - std::sys_common::backtrace::__rust_end_short_backtrace::h51bae64be5921f0e [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x557b57da84e9 - rust_begin_unwind [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x557b57688861 - core::panicking::panic_fmt::h12a3a3c256485fca [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x557b57688953 - core::result::unwrap_failed::h2d8d0952e3250de9 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/result.rs:1599:5 [INFO] [stdout] 16: 0x557b5783eca3 - core::result::Result::unwrap::hc616220279e7df64 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/result.rs:1281:23 [INFO] [stdout] 17: 0x557b57858414 - rust_htslib::bam::index::tests::test_index_build::h3580619bf9b4aff1 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/index.rs:72:9 [INFO] [stdout] 18: 0x557b5785834a - rust_htslib::bam::index::tests::test_index_build::{{closure}}::hd907b3f39d5656e1 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/index.rs:67:5 [INFO] [stdout] 19: 0x557b57794e2e - core::ops::function::FnOnce::call_once::hae61451906a08d62 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 20: 0x557b57895ac3 - core::ops::function::FnOnce::call_once::h5aba9a5d361d6c79 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x557b57895ac3 - test::__rust_begin_short_backtrace::h705bb53b2b1d45e6 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/test/src/lib.rs:578:5 [INFO] [stdout] 22: 0x557b57894578 - as core::ops::function::FnOnce>::call_once::ha20f614d7c0b2b6d [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 23: 0x557b57894578 - as core::ops::function::FnOnce<()>>::call_once::hf02f19eeb64ceabd [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:347:9 [INFO] [stdout] 24: 0x557b57894578 - std::panicking::try::do_call::h4bfab65eb3b4b036 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40 [INFO] [stdout] 25: 0x557b57894578 - std::panicking::try::h6613a46a6d2b6f88 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19 [INFO] [stdout] 26: 0x557b57894578 - std::panic::catch_unwind::h9f07b17b60991273 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14 [INFO] [stdout] 27: 0x557b57894578 - test::run_test_in_process::hc38797eecf07854f [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/test/src/lib.rs:601:18 [INFO] [stdout] 28: 0x557b57894578 - test::run_test::run_test_inner::{{closure}}::hac209db8bce0fd77 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/test/src/lib.rs:493:39 [INFO] [stdout] 29: 0x557b57862d0d - test::run_test::run_test_inner::{{closure}}::h4aefdd4b4a423e20 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/test/src/lib.rs:520:37 [INFO] [stdout] 30: 0x557b57862d0d - std::sys_common::backtrace::__rust_begin_short_backtrace::h652c9e2663704700 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 31: 0x557b578674e8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hd84fd5e0b5b1f45f [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/thread/mod.rs:476:17 [INFO] [stdout] 32: 0x557b578674e8 - as core::ops::function::FnOnce<()>>::call_once::he23556962a2ae14b [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:347:9 [INFO] [stdout] 33: 0x557b578674e8 - std::panicking::try::do_call::h67d4f93e1fbaa5f9 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40 [INFO] [stdout] 34: 0x557b578674e8 - std::panicking::try::h396886e678db815e [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19 [INFO] [stdout] 35: 0x557b578674e8 - std::panic::catch_unwind::hc1d64dcecf0a00e0 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14 [INFO] [stdout] 36: 0x557b578674e8 - std::thread::Builder::spawn_unchecked::{{closure}}::hc2644cf33cb61d8e [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/thread/mod.rs:475:30 [INFO] [stdout] 37: 0x557b578674e8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h4473c2c77b66963f [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 38: 0x557b57dae1a7 - as core::ops::function::FnOnce>::call_once::h6bff7798948b1075 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 39: 0x557b57dae1a7 - as core::ops::function::FnOnce>::call_once::hc2d25ac38f6b2342 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 40: 0x557b57dae1a7 - std::sys::unix::thread::Thread::new::thread_start::hbba5bc368baac205 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys/unix/thread.rs:74:17 [INFO] [stdout] 41: 0x7f3d1f68d609 - start_thread [INFO] [stdout] 42: 0x7f3d1f45d293 - clone [INFO] [stdout] 43: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- bam::tests::test_sam_writer_example stdout ---- [INFO] [stdout] thread 'bam::tests::test_sam_writer_example' panicked at 'called `Result::unwrap()` on an `Err` value: BamOpen { target: "./test/bam2sam_out.sam" }', src/bam/mod.rs:2272:83 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x557b57da5de0 - std::backtrace_rs::backtrace::libunwind::trace::ha0ad43e8a952bfe7 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stdout] 1: 0x557b57da5de0 - std::backtrace_rs::backtrace::trace_unsynchronized::h6830419c0c4130dc [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x557b57da5de0 - std::sys_common::backtrace::_print_fmt::h8f3516631ffa1ef5 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x557b57da5de0 - ::fmt::he1640d5f0d93f618 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x557b57dca03c - core::fmt::write::h88012e1f01caeebf [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/fmt/mod.rs:1115:17 [INFO] [stdout] 5: 0x557b57da27a5 - std::io::Write::write_fmt::h7728c39ea5632753 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/io/mod.rs:1665:15 [INFO] [stdout] 6: 0x557b57da83db - std::sys_common::backtrace::_print::ha1f00492f406a015 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 7: 0x557b57da83db - std::sys_common::backtrace::print::hd54561b13feb6af3 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 8: 0x557b57da83db - std::panicking::default_hook::{{closure}}::h84fe124cd0864662 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:208:50 [INFO] [stdout] 9: 0x557b57da7eec - std::panicking::default_hook::h5a8e74a76ce290a7 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:222:9 [INFO] [stdout] 10: 0x557b57da8aa4 - std::panicking::rust_panic_with_hook::h67c812a4fe9d4c91 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:622:17 [INFO] [stdout] 11: 0x557b57da8587 - std::panicking::begin_panic_handler::{{closure}}::h33f9c1b96af300d7 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:519:13 [INFO] [stdout] 12: 0x557b57da62dc - std::sys_common::backtrace::__rust_end_short_backtrace::h51bae64be5921f0e [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 13: 0x557b57da84e9 - rust_begin_unwind [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:515:5 [INFO] [stdout] 14: 0x557b57688861 - core::panicking::panic_fmt::h12a3a3c256485fca [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/panicking.rs:92:14 [INFO] [stdout] 15: 0x557b57688953 - core::result::unwrap_failed::h2d8d0952e3250de9 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/result.rs:1599:5 [INFO] [stdout] 16: 0x557b5783e1bf - core::result::Result::unwrap::h2f8a32df79c76068 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/result.rs:1281:23 [INFO] [stdout] 17: 0x557b577e9f67 - rust_htslib::bam::tests::test_sam_writer_example::from_bam_with_filter::he495abba8bb55dbe [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2272:34 [INFO] [stdout] 18: 0x557b577e99d5 - rust_htslib::bam::tests::test_sam_writer_example::h4b3d0fedd972dc55 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2295:22 [INFO] [stdout] 19: 0x557b577e994a - rust_htslib::bam::tests::test_sam_writer_example::{{closure}}::hf3d4ba4e99215110 [INFO] [stdout] at /opt/rustwide/workdir/src/bam/mod.rs:2265:5 [INFO] [stdout] 20: 0x557b57793a5e - core::ops::function::FnOnce::call_once::h029c4477288fd525 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 21: 0x557b57895ac3 - core::ops::function::FnOnce::call_once::h5aba9a5d361d6c79 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 22: 0x557b57895ac3 - test::__rust_begin_short_backtrace::h705bb53b2b1d45e6 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/test/src/lib.rs:578:5 [INFO] [stdout] 23: 0x557b57894578 - as core::ops::function::FnOnce>::call_once::ha20f614d7c0b2b6d [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 24: 0x557b57894578 - as core::ops::function::FnOnce<()>>::call_once::hf02f19eeb64ceabd [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:347:9 [INFO] [stdout] 25: 0x557b57894578 - std::panicking::try::do_call::h4bfab65eb3b4b036 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40 [INFO] [stdout] 26: 0x557b57894578 - std::panicking::try::h6613a46a6d2b6f88 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19 [INFO] [stdout] 27: 0x557b57894578 - std::panic::catch_unwind::h9f07b17b60991273 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14 [INFO] [stdout] 28: 0x557b57894578 - test::run_test_in_process::hc38797eecf07854f [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/test/src/lib.rs:601:18 [INFO] [stdout] 29: 0x557b57894578 - test::run_test::run_test_inner::{{closure}}::hac209db8bce0fd77 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/test/src/lib.rs:493:39 [INFO] [stdout] 30: 0x557b57862d0d - test::run_test::run_test_inner::{{closure}}::h4aefdd4b4a423e20 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/test/src/lib.rs:520:37 [INFO] [stdout] 31: 0x557b57862d0d - std::sys_common::backtrace::__rust_begin_short_backtrace::h652c9e2663704700 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 32: 0x557b578674e8 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::hd84fd5e0b5b1f45f [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/thread/mod.rs:476:17 [INFO] [stdout] 33: 0x557b578674e8 - as core::ops::function::FnOnce<()>>::call_once::he23556962a2ae14b [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:347:9 [INFO] [stdout] 34: 0x557b578674e8 - std::panicking::try::do_call::h67d4f93e1fbaa5f9 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:401:40 [INFO] [stdout] 35: 0x557b578674e8 - std::panicking::try::h396886e678db815e [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panicking.rs:365:19 [INFO] [stdout] 36: 0x557b578674e8 - std::panic::catch_unwind::hc1d64dcecf0a00e0 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/panic.rs:434:14 [INFO] [stdout] 37: 0x557b578674e8 - std::thread::Builder::spawn_unchecked::{{closure}}::hc2644cf33cb61d8e [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/thread/mod.rs:475:30 [INFO] [stdout] 38: 0x557b578674e8 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h4473c2c77b66963f [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 39: 0x557b57dae1a7 - as core::ops::function::FnOnce>::call_once::h6bff7798948b1075 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 40: 0x557b57dae1a7 - as core::ops::function::FnOnce>::call_once::hc2d25ac38f6b2342 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/alloc/src/boxed.rs:1572:9 [INFO] [stdout] 41: 0x557b57dae1a7 - std::sys::unix::thread::Thread::new::thread_start::hbba5bc368baac205 [INFO] [stdout] at /rustc/c8dfcfe046a7680554bf4eb612bad840e7631c4b/library/std/src/sys/unix/thread.rs:74:17 [INFO] [stdout] 42: 0x7f3d1f68d609 - start_thread [INFO] [stdout] 43: 0x7f3d1f45d293 - clone [INFO] [stdout] 44: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] bam::index::tests::test_index_build [INFO] [stdout] bam::tests::test_sam_writer_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 116 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.54s [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--lib' [INFO] running `Command { std: "docker" "inspect" "b923d660407503ed13214616d971c1c0e6043da554307338a2ceacae975f3671", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b923d660407503ed13214616d971c1c0e6043da554307338a2ceacae975f3671", kill_on_drop: false }` [INFO] [stdout] b923d660407503ed13214616d971c1c0e6043da554307338a2ceacae975f3671