[INFO] fetching crate rasusa 0.6.0... [INFO] testing rasusa-0.6.0 against 1.55.0 for beta-1.56-1 [INFO] extracting crate rasusa 0.6.0 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate rasusa 0.6.0 on toolchain 1.55.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate rasusa 0.6.0 [INFO] finished tweaking crates.io crate rasusa 0.6.0 [INFO] tweaked toml for crates.io crate rasusa 0.6.0 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate crates.io crate rasusa 0.6.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 0023dd2327ef80634fdeab35f0b42a2042424875a2da433c14843c9b330076cf [INFO] running `Command { std: "docker" "start" "-a" "0023dd2327ef80634fdeab35f0b42a2042424875a2da433c14843c9b330076cf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0023dd2327ef80634fdeab35f0b42a2042424875a2da433c14843c9b330076cf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0023dd2327ef80634fdeab35f0b42a2042424875a2da433c14843c9b330076cf", kill_on_drop: false }` [INFO] [stdout] 0023dd2327ef80634fdeab35f0b42a2042424875a2da433c14843c9b330076cf [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 693bdbe5e4428b9d6579335c502c26538d17c9b2f479bc72e72d1510dd66b079 [INFO] running `Command { std: "docker" "start" "-a" "693bdbe5e4428b9d6579335c502c26538d17c9b2f479bc72e72d1510dd66b079", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling cc v1.0.45 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling getrandom v0.1.12 [INFO] [stderr] Compiling winapi v0.3.8 [INFO] [stderr] Compiling adler32 v1.0.4 [INFO] [stderr] Compiling cgmath v0.16.1 [INFO] [stderr] Compiling bitflags v1.2.0 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling rgb v0.8.14 [INFO] [stderr] Compiling unicode-segmentation v1.3.0 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling unicode-width v0.1.6 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling anyhow v1.0.33 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.41 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling miniz_oxide v0.3.3 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling c2-chacha v0.2.2 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling flate2 v1.0.12 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling time v0.1.42 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling chrono v0.4.9 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Compiling rand v0.7.2 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling bzip2 v0.4.3 [INFO] [stderr] Compiling needletail v0.4.1 [INFO] [stderr] Compiling proc-macro-error v0.2.6 [INFO] [stderr] Compiling winconsole v0.10.0 [INFO] [stderr] Compiling colored v1.8.0 [INFO] [stderr] Compiling fern v0.5.9 [INFO] [stderr] Compiling thiserror-impl v1.0.21 [INFO] [stderr] Compiling structopt-derive v0.3.2 [INFO] [stderr] Compiling thiserror v1.0.21 [INFO] [stderr] Compiling bgzip v0.2.1 [INFO] [stderr] Compiling structopt v0.3.2 [INFO] [stderr] Compiling niffler v2.3.2 [INFO] [stderr] Compiling rasusa v0.6.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 24.22s [INFO] running `Command { std: "docker" "inspect" "693bdbe5e4428b9d6579335c502c26538d17c9b2f479bc72e72d1510dd66b079", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "693bdbe5e4428b9d6579335c502c26538d17c9b2f479bc72e72d1510dd66b079", kill_on_drop: false }` [INFO] [stdout] 693bdbe5e4428b9d6579335c502c26538d17c9b2f479bc72e72d1510dd66b079 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 25549ec27187935fbdb8d941b87668fbf14bdc107713f41f1c8e9ee775bfad86 [INFO] running `Command { std: "docker" "start" "-a" "25549ec27187935fbdb8d941b87668fbf14bdc107713f41f1c8e9ee775bfad86", kill_on_drop: false }` [INFO] [stderr] Compiling serde v1.0.101 [INFO] [stderr] Compiling ryu v1.0.0 [INFO] [stderr] Compiling predicates-core v1.0.0 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling normalize-line-endings v0.2.2 [INFO] [stderr] Compiling float-cmp v0.4.0 [INFO] [stderr] Compiling serde_derive v1.0.101 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling predicates v1.0.1 [INFO] [stderr] Compiling predicates-tree v1.0.0 [INFO] [stderr] Compiling serde_json v1.0.41 [INFO] [stderr] Compiling escargot v0.3.1 [INFO] [stderr] Compiling assert_cmd v0.10.2 [INFO] [stderr] Compiling rasusa v0.6.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 17.50s [INFO] running `Command { std: "docker" "inspect" "25549ec27187935fbdb8d941b87668fbf14bdc107713f41f1c8e9ee775bfad86", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "25549ec27187935fbdb8d941b87668fbf14bdc107713f41f1c8e9ee775bfad86", kill_on_drop: false }` [INFO] [stdout] 25549ec27187935fbdb8d941b87668fbf14bdc107713f41f1c8e9ee775bfad86 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 4754d1231235a38fa22bfd396c758365cde2b39f5202248e9288aa1523cd4d35 [INFO] running `Command { std: "docker" "start" "-a" "4754d1231235a38fa22bfd396c758365cde2b39f5202248e9288aa1523cd4d35", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rasusa-413cc71867b6a5be) [INFO] [stdout] [INFO] [stdout] running 80 tests [INFO] [stdout] test cli::tests::compression_format_from_path ... ok [INFO] [stdout] test cli::tests::base_suffix_from_string ... ok [INFO] [stdout] test cli::tests::divide_u64_by_genome_size ... ok [INFO] [stdout] test cli::tests::empty_string_is_base_metric_suffix ... ok [INFO] [stdout] test cli::tests::compression_format_from_str ... ok [INFO] [stdout] test cli::tests::float_multiply_with_base_unit ... ok [INFO] [stdout] test cli::tests::genome_size_from_faidx ... ok [INFO] [stdout] test cli::tests::genome_size_from_faidx_fastq_index ... ok [INFO] [stdout] test cli::tests::giga_suffix_from_string ... ok [INFO] [stdout] test cli::tests::empty_coverage_returns_err ... ok [INFO] [stdout] test cli::tests::float_only_returns_integer ... ok [INFO] [stdout] test cli::tests::float_coverage_returns_float ... ok [INFO] [stdout] test cli::tests::kilo_suffix_from_string ... ok [INFO] [stdout] test cli::tests::mega_suffix_from_string ... ok [INFO] [stdout] test cli::tests::invalid_suffix_raises_error ... ok [INFO] [stdout] test cli::tests::float_ending_in_x_coverage_returns_float ... ok [INFO] [stdout] test cli::tests::tera_suffix_from_string ... ok [INFO] [stdout] test cli::tests::invalid_coverage_given_raises_error ... ok [INFO] [stdout] test cli::tests::test_in_compress_range ... ok [INFO] [stdout] test cli::tests::no_genome_size_given_raises_error ... ok [INFO] [stdout] test cli::tests::int_ending_in_x_coverage_returns_float ... ok [INFO] [stdout] test cli::tests::no_input_file_given_raises_error ... ok [INFO] [stdout] test cli::tests::empty_string_returns_error ... ok [INFO] [stdout] test cli::tests::no_args_given_raises_error ... ok [INFO] [stdout] test cli::tests::no_coverage_given_raises_error ... ok [INFO] [stdout] test cli::tests::non_number_coverage_returns_err ... ok [INFO] [stdout] test fastx::tests::create_invalid_output_file_raises_error ... ok [INFO] [stdout] test cli::tests::int_coverage_returns_float ... ok [INFO] [stdout] test fastx::tests::create_valid_output_file_and_can_write_to_it ... ok [INFO] [stdout] test fastx::tests::fastx_from_fasta ... ok [INFO] [stdout] test fastx::tests::filter_fasta_reads_one_index_matches_only_read ... ok [INFO] [stdout] test fastx::tests::filter_fasta_reads_one_index_out_of_range ... ok [INFO] [stdout] test fastx::tests::filter_fastq_reads_one_index_matches_only_read ... ok [INFO] [stdout] test fastx::tests::filter_fastq_reads_one_index_matches_one_of_two_reads ... ok [INFO] [stdout] test fastx::tests::filter_fastq_reads_one_index_out_of_range ... ok [INFO] [stdout] test fastx::tests::filter_reads_empty_indices_no_output ... ok [INFO] [stdout] test fastx::tests::filter_fastq_reads_two_indices_matches_first_and_last_reads ... ok [INFO] [stdout] test cli::tests::zero_coverage_returns_zero ... ok [INFO] [stdout] test fastx::tests::get_read_lengths_for_empty_fasta_returns_empty_vector ... ok [INFO] [stdout] test subsampler::tests::shuffled_indices_for_empty_vector_returns_empty ... ok [INFO] [stdout] test fastx::tests::get_read_lengths_for_fastq ... ok [INFO] [stdout] test fastx::tests::get_read_lengths_for_fasta ... ok [INFO] [stdout] test subsampler::tests::shuffled_indices_with_seed_produces_same_ordering ... ok [INFO] [stdout] test subsampler::tests::subsample_empty_lengths_returns_empty ... ok [INFO] [stdout] test subsampler::tests::shuffled_indices_for_vector_len_two_does_shuffle ... ok [INFO] [stdout] test subsampler::tests::subsample_one_length_less_than_target_returns_zero ... ok [INFO] [stdout] test subsampler::tests::subsample_three_lengths_all_greater_than_target_returns_two ... ok [INFO] [stdout] test subsampler::tests::shuffled_indices_for_vector_len_one_returns_zero ... ok [INFO] [stdout] test subsampler::tests::subsample_one_length_greater_than_target_returns_zero ... ok [INFO] [stdout] test subsampler::tests::subsample_three_lengths_sum_equal_target_returns_three ... ok [INFO] [stdout] test subsampler::tests::subsample_one_length_target_zero_returns_empty ... ok [INFO] [stdout] test subsampler::tests::subsample_three_lengths_sum_greater_than_target_returns_two ... ok [INFO] [stdout] test subsampler::tests::subsample_three_lengths_sum_less_than_target_returns_three ... ok [INFO] [stdout] test cli::tests::genome_size_from_str_fastq_index ... ok [INFO] [stdout] test fastx::tests::create_valid_compressed_output_file_and_can_write_to_it ... ok [INFO] [stdout] test cli::tests::multiply_coverage_by_genome_size ... ok [INFO] [stdout] test cli::tests::int_and_tera_suffix_returns_multiplied_int ... ok [INFO] [stdout] test cli::tests::invalid_suffix_returns_err ... ok [INFO] [stdout] test cli::tests::float_and_suffix_returns_multiplied_float_as_int ... ok [INFO] [stdout] test cli::tests::faidx_given_as_genome_size ... ok [INFO] [stdout] test cli::tests::float_without_leading_int_and_suffix_returns_multiplied_float_as_int ... ok [INFO] [stdout] test cli::tests::multiply_genome_size_by_coverage ... ok [INFO] [stdout] test cli::tests::all_valid_args_with_two_inputs_parsed_as_expected ... ok [INFO] [stdout] test cli::tests::int_and_suffix_returns_multiplied_int ... ok [INFO] [stdout] test cli::tests::invalid_genome_size_given_raises_error ... ok [INFO] [stdout] test cli::tests::suffix_with_no_size_returns_error ... ok [INFO] [stdout] test cli::tests::int_and_base_suffix_returns_int_without_scaling ... ok [INFO] [stdout] test cli::tests::invalid_seed_given_raises_error ... ok [INFO] [stdout] test cli::tests::integer_only_returns_integer ... ok [INFO] [stdout] test cli::tests::no_genome_size_or_coverage_given_but_bases_given ... ok [INFO] [stdout] test cli::tests::all_valid_args_with_two_inputs_using_flag_twice_parsed_as_expected ... ok [INFO] [stdout] test cli::tests::one_input_no_output_is_ok ... ok [INFO] [stdout] test cli::tests::two_inputs_one_output_raises_error ... ok [INFO] [stdout] test cli::tests::all_valid_args_parsed_as_expected ... ok [INFO] [stdout] test cli::tests::no_genome_size_but_bases ... ok [INFO] [stdout] test cli::tests::two_input_two_outputs_is_ok ... ok [INFO] [stdout] test cli::tests::one_input_two_outputs_raises_error ... ok [INFO] [stdout] test cli::tests::three_inputs_raises_error ... ok [INFO] [stdout] test cli::tests::three_outputs_raises_error ... ok [INFO] [stdout] test cli::tests::bases_and_coverage_and_genome_size_all_llowed ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 80 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.23s [INFO] [stdout] [INFO] [stderr] Running tests/main.rs (/opt/rustwide/target/debug/deps/main-3fede0bceb8bb200) [INFO] [stdout] [INFO] [stdout] running 7 tests [INFO] [stdout] test valid_inputs_raises_no_errors ... ok [INFO] [stdout] test output_file_in_nonexistant_dir ... ok [INFO] [stdout] test input_file_doesnt_exist ... ok [INFO] [stdout] test input_and_output_filetypes_different_raises_no_errors ... ok [INFO] [stdout] test unequal_number_of_reads_raises_error ... ok [INFO] [stdout] test two_valid_illumina_inputs_suceeds ... ok [INFO] [stdout] test invalid_input_and_output_combination_raises_error ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 44.84s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "4754d1231235a38fa22bfd396c758365cde2b39f5202248e9288aa1523cd4d35", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4754d1231235a38fa22bfd396c758365cde2b39f5202248e9288aa1523cd4d35", kill_on_drop: false }` [INFO] [stdout] 4754d1231235a38fa22bfd396c758365cde2b39f5202248e9288aa1523cd4d35