[INFO] fetching crate noodles-bam 0.4.0... [INFO] testing noodles-bam-0.4.0 against 1.55.0 for beta-1.56-1 [INFO] extracting crate noodles-bam 0.4.0 into /workspace/builds/worker-0/source [INFO] validating manifest of crates.io crate noodles-bam 0.4.0 on toolchain 1.55.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate noodles-bam 0.4.0 [INFO] finished tweaking crates.io crate noodles-bam 0.4.0 [INFO] tweaked toml for crates.io crate noodles-bam 0.4.0 written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate crates.io crate noodles-bam 0.4.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 7cb227af188a1f3de8aab8af289b0360a570c4969ee035515fe057f429fea6f2 [INFO] running `Command { std: "docker" "start" "-a" "7cb227af188a1f3de8aab8af289b0360a570c4969ee035515fe057f429fea6f2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7cb227af188a1f3de8aab8af289b0360a570c4969ee035515fe057f429fea6f2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7cb227af188a1f3de8aab8af289b0360a570c4969ee035515fe057f429fea6f2", kill_on_drop: false }` [INFO] [stdout] 7cb227af188a1f3de8aab8af289b0360a570c4969ee035515fe057f429fea6f2 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 104afde9e686820198ed7f013fdc032b9892c32442afbe81086e17dc548cd69d [INFO] running `Command { std: "docker" "start" "-a" "104afde9e686820198ed7f013fdc032b9892c32442afbe81086e17dc548cd69d", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling libc v0.2.99 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling adler v1.0.2 [INFO] [stderr] Compiling hashbrown v0.11.2 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling miniz_oxide v0.4.4 [INFO] [stderr] Compiling indexmap v1.7.0 [INFO] [stderr] Compiling flate2 v1.0.20 [INFO] [stderr] Compiling noodles-bgzf v0.4.0 [INFO] [stderr] Compiling noodles-sam v0.2.2 [INFO] [stderr] Compiling noodles-csi v0.3.0 [INFO] [stderr] Compiling noodles-core v0.1.2 [INFO] [stderr] Compiling noodles-bam v0.4.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 6.33s [INFO] running `Command { std: "docker" "inspect" "104afde9e686820198ed7f013fdc032b9892c32442afbe81086e17dc548cd69d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "104afde9e686820198ed7f013fdc032b9892c32442afbe81086e17dc548cd69d", kill_on_drop: false }` [INFO] [stdout] 104afde9e686820198ed7f013fdc032b9892c32442afbe81086e17dc548cd69d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] eb7716127bea185ef222951208a01ed83952bc464e8de4ad5e3f43d13723cb2c [INFO] running `Command { std: "docker" "start" "-a" "eb7716127bea185ef222951208a01ed83952bc464e8de4ad5e3f43d13723cb2c", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.28 [INFO] [stderr] Compiling syn v1.0.74 [INFO] [stderr] Compiling pin-project-lite v0.2.7 [INFO] [stderr] Compiling tokio v1.10.0 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling quote v1.0.9 [INFO] [stderr] Compiling tokio-macros v1.3.0 [INFO] [stderr] Compiling noodles-bam v0.4.0 (/opt/rustwide/workdir) [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_read_header_async.rs:17:53 [INFO] [stdout] | [INFO] [stdout] 17 | let mut reader = File::open(src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stderr] error: could not compile `noodles-bam` due to 2 previous errors [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> examples/bam_reheader_async.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> examples/bam_view_async.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_reheader_async.rs:18:53 [INFO] [stdout] | [INFO] [stdout] 18 | let mut reader = File::open(src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_view_async.rs:16:53 [INFO] [stdout] | [INFO] [stdout] 16 | let mut reader = File::open(src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncWriter` in `bam` [INFO] [stdout] --> examples/bam_reheader_async.rs:24:27 [INFO] [stdout] | [INFO] [stdout] 24 | let mut writer = bam::AsyncWriter::new(io::stdout()); [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncWriter` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_idxstats_async.rs:20:54 [INFO] [stdout] | [INFO] [stdout] 20 | let mut reader = File::open(&src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 3 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `r#async` in `bai` [INFO] [stdout] --> examples/bam_idxstats_async.rs:23:22 [INFO] [stdout] | [INFO] [stdout] 23 | let index = bai::r#async::read(src.with_extension("bam.bai")).await?; [INFO] [stdout] | ^^^^^^^ could not find `r#async` in `bai` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncWriter` in `bam` [INFO] [stdout] --> examples/bam_write_async.rs:17:27 [INFO] [stdout] | [INFO] [stdout] 17 | let mut writer = bam::AsyncWriter::new(stdout); [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncWriter` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> examples/bam_query_async.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_query_async.rs:22:54 [INFO] [stdout] | [INFO] [stdout] 22 | let mut reader = File::open(&src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `r#async` in `bai` [INFO] [stdout] --> examples/bam_query_async.rs:26:22 [INFO] [stdout] | [INFO] [stdout] 26 | let index = bai::r#async::read(src.with_extension("bam.bai")).await?; [INFO] [stdout] | ^^^^^^^ could not find `r#async` in `bai` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stdout] warning: unused import: `BinningIndex` [INFO] [stdout] --> examples/bam_idxstats_async.rs:12:19 [INFO] [stdout] | [INFO] [stdout] 12 | use noodles_csi::{BinningIndex, BinningIndexReferenceSequence}; [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `BinningIndexReferenceSequence` [INFO] [stdout] --> examples/bam_idxstats_async.rs:12:33 [INFO] [stdout] | [INFO] [stdout] 12 | use noodles_csi::{BinningIndex, BinningIndexReferenceSequence}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors; 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] For more information about this error, try `rustc --explain E0433`. [INFO] [stdout] [INFO] [stdout] error: aborting due to 3 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stdout] error[E0432]: unresolved import `futures` [INFO] [stdout] --> examples/bam_count_async.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use futures::TryStreamExt; [INFO] [stdout] | ^^^^^^^ use of undeclared crate or module `futures` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error[E0433]: failed to resolve: could not find `AsyncReader` in `bam` [INFO] [stdout] --> examples/bam_count_async.rs:15:53 [INFO] [stdout] | [INFO] [stdout] 15 | let mut reader = File::open(src).await.map(bam::AsyncReader::new)?; [INFO] [stdout] | ^^^^^^^^^^^ could not find `AsyncReader` in `bam` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 2 previous errors [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] Some errors have detailed explanations: E0432, E0433. [INFO] [stdout] [INFO] [stdout] For more information about an error, try `rustc --explain E0432`. [INFO] [stdout] [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "eb7716127bea185ef222951208a01ed83952bc464e8de4ad5e3f43d13723cb2c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "eb7716127bea185ef222951208a01ed83952bc464e8de4ad5e3f43d13723cb2c", kill_on_drop: false }` [INFO] [stdout] eb7716127bea185ef222951208a01ed83952bc464e8de4ad5e3f43d13723cb2c