[INFO] fetching crate bio-types 0.12.0... [INFO] testing bio-types-0.12.0 against 1.55.0 for beta-1.56-1 [INFO] extracting crate bio-types 0.12.0 into /workspace/builds/worker-3/source [INFO] validating manifest of crates.io crate bio-types 0.12.0 on toolchain 1.55.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate bio-types 0.12.0 [INFO] finished tweaking crates.io crate bio-types 0.12.0 [INFO] tweaked toml for crates.io crate bio-types 0.12.0 written to /workspace/builds/worker-3/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 197fee68f2bac0488ed6b40fe7e1362ce875b380483d442aced5cba040887df0 [INFO] running `Command { std: "docker" "start" "-a" "197fee68f2bac0488ed6b40fe7e1362ce875b380483d442aced5cba040887df0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "197fee68f2bac0488ed6b40fe7e1362ce875b380483d442aced5cba040887df0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "197fee68f2bac0488ed6b40fe7e1362ce875b380483d442aced5cba040887df0", kill_on_drop: false }` [INFO] [stdout] 197fee68f2bac0488ed6b40fe7e1362ce875b380483d442aced5cba040887df0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] acf14a92584a0db83ba515a0ac61b4ed2f7c3bcda8eb3cd3d1f8eec06d17719e [INFO] running `Command { std: "docker" "start" "-a" "acf14a92584a0db83ba515a0ac61b4ed2f7c3bcda8eb3cd3d1f8eec06d17719e", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Compiling syn v1.0.76 [INFO] [stderr] Compiling thiserror-impl v1.0.29 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Compiling strum_macros v0.20.1 [INFO] [stderr] Compiling thiserror v1.0.29 [INFO] [stderr] Compiling bio-types v0.12.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 10.49s [INFO] running `Command { std: "docker" "inspect" "acf14a92584a0db83ba515a0ac61b4ed2f7c3bcda8eb3cd3d1f8eec06d17719e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "acf14a92584a0db83ba515a0ac61b4ed2f7c3bcda8eb3cd3d1f8eec06d17719e", kill_on_drop: false }` [INFO] [stdout] acf14a92584a0db83ba515a0ac61b4ed2f7c3bcda8eb3cd3d1f8eec06d17719e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] bb6a3536b4cd42c57984a001faae940a96fbbd5c2f47c3fda2364a4bd2f938c3 [INFO] running `Command { std: "docker" "start" "-a" "bb6a3536b4cd42c57984a001faae940a96fbbd5c2f47c3fda2364a4bd2f938c3", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling bio-types v0.12.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 2.54s [INFO] running `Command { std: "docker" "inspect" "bb6a3536b4cd42c57984a001faae940a96fbbd5c2f47c3fda2364a4bd2f938c3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bb6a3536b4cd42c57984a001faae940a96fbbd5c2f47c3fda2364a4bd2f938c3", kill_on_drop: false }` [INFO] [stdout] bb6a3536b4cd42c57984a001faae940a96fbbd5c2f47c3fda2364a4bd2f938c3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 83bac2cba4421549f79e4d6edf167c85e74afbcde3ad694f8ffd61daec018250 [INFO] running `Command { std: "docker" "start" "-a" "83bac2cba4421549f79e4d6edf167c85e74afbcde3ad694f8ffd61daec018250", kill_on_drop: false }` [INFO] [stderr] warning: only one of `license` or `license-file` is necessary [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.03s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/bio_types-86c5958680f8e914) [INFO] [stdout] [INFO] [stdout] running 15 tests [INFO] [stdout] test alignment::tests::test_cigar ... ok [INFO] [stdout] test annot::pos::tests::pos_accessors ... ok [INFO] [stdout] test alignment::tests::test_path ... ok [INFO] [stdout] test alignment::tests::test_pretty ... ok [INFO] [stdout] test annot::pos::tests::loc_impl ... ok [INFO] [stdout] test annot::contig::tests::first_and_last ... ok [INFO] [stdout] test annot::contig::tests::intersection ... ok [INFO] [stdout] test annot::pos::tests::strand_conversion ... ok [INFO] [stdout] test annot::spliced::tests::into_outof ... ok [INFO] [stdout] test annot::spliced::tests::intersection ... ok [INFO] [stdout] test annot::contig::tests::into_outof ... ok [INFO] [stdout] test strand::tests::test_strand ... ok [INFO] [stdout] test annot::pos::tests::string_representation ... ok [INFO] [stdout] test strand::tests::test_req_strand ... ok [INFO] [stdout] test annot::spliced::tests::length_start_to_contig ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s [INFO] [stdout] [INFO] [stderr] Doc-tests bio-types [INFO] [stdout] [INFO] [stdout] running 17 tests [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::new (line 55) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::add_assign (line 96) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_downstream (line 177) ... ok [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced::new (line 238) ... ok [INFO] [stdout] test src/strand.rs - strand::ReqStrand::on_strand (line 175) ... ok [INFO] [stdout] test src/sequence.rs - sequence::SequenceReadPairOrientation (line 39) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::new (line 57) ... ok [INFO] [stdout] test src/annot/refids.rs - annot::refids::RefIDSet (line 14) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::extend_upstream (line 150) ... ok [INFO] [stdout] test src/alignment.rs - alignment::Alignment::cigar (line 95) ... ok [INFO] [stdout] test src/annot/spliced.rs - annot::spliced::Spliced (line 208) ... ok [INFO] [stdout] test src/alignment.rs - alignment::Alignment::path (line 332) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos (line 31) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig::with_first_length (line 82) ... ok [INFO] [stdout] test src/annot/pos.rs - annot::pos::Pos::sub_assign (line 127) ... ok [INFO] [stdout] test src/annot/mod.rs - annot (line 30) ... ok [INFO] [stdout] test src/annot/contig.rs - annot::contig::Contig (line 32) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 17 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 4.63s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "83bac2cba4421549f79e4d6edf167c85e74afbcde3ad694f8ffd61daec018250", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "83bac2cba4421549f79e4d6edf167c85e74afbcde3ad694f8ffd61daec018250", kill_on_drop: false }` [INFO] [stdout] 83bac2cba4421549f79e4d6edf167c85e74afbcde3ad694f8ffd61daec018250