[INFO] cloning repository https://github.com/robsyme/rustalind [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/robsyme/rustalind" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 264d21ca5f12caf9ce4156f1d721874a4cd24e12 [INFO] testing robsyme/rustalind against 1.55.0 for beta-1.56-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Frobsyme%2Frustalind" "/workspace/builds/worker-1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/robsyme/rustalind on toolchain 1.55.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/robsyme/rustalind [INFO] finished tweaking git repo https://github.com/robsyme/rustalind [INFO] tweaked toml for git repo https://github.com/robsyme/rustalind written to /workspace/builds/worker-1/source/Cargo.toml [INFO] crate git repo https://github.com/robsyme/rustalind already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 01037ea562ddda12cc1ae0519582a391a1006121a9dc46ee4203b6ca610fd2d0 [INFO] running `Command { std: "docker" "start" "-a" "01037ea562ddda12cc1ae0519582a391a1006121a9dc46ee4203b6ca610fd2d0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "01037ea562ddda12cc1ae0519582a391a1006121a9dc46ee4203b6ca610fd2d0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "01037ea562ddda12cc1ae0519582a391a1006121a9dc46ee4203b6ca610fd2d0", kill_on_drop: false }` [INFO] [stdout] 01037ea562ddda12cc1ae0519582a391a1006121a9dc46ee4203b6ca610fd2d0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 377a2628650c483a0e24321bbfbb13c2362db510e4efe63dfee226565d5eb8d3 [INFO] running `Command { std: "docker" "start" "-a" "377a2628650c483a0e24321bbfbb13c2362db510e4efe63dfee226565d5eb8d3", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.49 [INFO] [stderr] Compiling unicode-width v0.1.5 [INFO] [stderr] Compiling strsim v0.7.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling bit-vec v0.5.0 [INFO] [stderr] Compiling bitflags v1.0.4 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling bit-set v0.5.0 [INFO] [stderr] Compiling atty v0.2.11 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling rustalind v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::convert::TryFrom` [INFO] [stdout] --> src/seq/nuc.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::convert::TryFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 3m 52s [INFO] running `Command { std: "docker" "inspect" "377a2628650c483a0e24321bbfbb13c2362db510e4efe63dfee226565d5eb8d3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "377a2628650c483a0e24321bbfbb13c2362db510e4efe63dfee226565d5eb8d3", kill_on_drop: false }` [INFO] [stdout] 377a2628650c483a0e24321bbfbb13c2362db510e4efe63dfee226565d5eb8d3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 93805cd3f01a386784cbcf5dd15bb47d4e779f12bc22c5e608de3f4abf6253be [INFO] running `Command { std: "docker" "start" "-a" "93805cd3f01a386784cbcf5dd15bb47d4e779f12bc22c5e608de3f4abf6253be", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling rustalind v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `std::convert::TryFrom` [INFO] [stdout] --> src/seq/nuc.rs:2:5 [INFO] [stdout] | [INFO] [stdout] 2 | use std::convert::TryFrom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 1 warning emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 1.64s [INFO] running `Command { std: "docker" "inspect" "93805cd3f01a386784cbcf5dd15bb47d4e779f12bc22c5e608de3f4abf6253be", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "93805cd3f01a386784cbcf5dd15bb47d4e779f12bc22c5e608de3f4abf6253be", kill_on_drop: false }` [INFO] [stdout] 93805cd3f01a386784cbcf5dd15bb47d4e779f12bc22c5e608de3f4abf6253be [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] c7ce46582360ba84cc8f67e220a81edceb8839df4f1eaec524b6073123e67275 [INFO] running `Command { std: "docker" "start" "-a" "c7ce46582360ba84cc8f67e220a81edceb8839df4f1eaec524b6073123e67275", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: unused import: `std::convert::TryFrom` [INFO] [stderr] --> src/seq/nuc.rs:2:5 [INFO] [stderr] | [INFO] [stderr] 2 | use std::convert::TryFrom; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `rustalind` (lib) generated 1 warning [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.91s [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rustalind-795b8566a9be899b) [INFO] [stdout] [INFO] [stdout] running 12 tests [INFO] [stdout] test io::tests::blank_fasta ... ok [INFO] [stdout] test io::tests::test_gc_counting ... ok [INFO] [stdout] test seq::codon::tests::test_table_integration ... ok [INFO] [stdout] test io::tests::erroneous_fasta ... ok [INFO] [stdout] test seq::nuc::tests::dna_from_chars ... ok [INFO] [stdout] test seq::nuc::tests::dna_as_tagged_enums ... ok [INFO] [stdout] test seq::nuc::tests::dna_complement ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_xor ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_and ... ok [INFO] [stdout] test seq::nuc::tests::dna_bit_or ... ok [INFO] [stdout] test seq::nuc::tests::dna_from_string ... ok [INFO] [stderr] Running unittests (/opt/rustwide/target/debug/deps/rustalind-30089e3e2dcd08b6) [INFO] [stdout] test seq::translation::tests::test_get ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 6 tests [INFO] [stdout] test fib::tests::test_basic_recurrence ... ok [INFO] [stdout] test prot::tests::test_translate ... ok [INFO] [stderr] Doc-tests rustalind [INFO] [stdout] test rna::tests::test_translation ... ok [INFO] [stdout] test hamm::tests::basic_distance ... ok [INFO] [stdout] test dna::tests::count_basic_occurrences ... ok [INFO] [stdout] test revc::tests::test_reverse_complement ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "c7ce46582360ba84cc8f67e220a81edceb8839df4f1eaec524b6073123e67275", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c7ce46582360ba84cc8f67e220a81edceb8839df4f1eaec524b6073123e67275", kill_on_drop: false }` [INFO] [stdout] c7ce46582360ba84cc8f67e220a81edceb8839df4f1eaec524b6073123e67275