[INFO] cloning repository https://github.com/mooreryan/bio_ballyhoo
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mooreryan/bio_ballyhoo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4895a9c2f64f3443dbc032002a5d6a371a1062d0
[INFO] testing mooreryan/bio_ballyhoo against 1.55.0 for beta-1.56-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmooreryan%2Fbio_ballyhoo" "/workspace/builds/worker-10/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-10/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/mooreryan/bio_ballyhoo on toolchain 1.55.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] finished tweaking git repo https://github.com/mooreryan/bio_ballyhoo
[INFO] tweaked toml for git repo https://github.com/mooreryan/bio_ballyhoo written to /workspace/builds/worker-10/source/Cargo.toml
[INFO] crate git repo https://github.com/mooreryan/bio_ballyhoo already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.55.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded terminal_size v0.1.16
[INFO] [stderr]   Downloaded derive-new v0.5.9
[INFO] [stderr]   Downloaded snafu-derive v0.6.10
[INFO] [stderr]   Downloaded bit-vec v0.6.3
[INFO] [stderr]   Downloaded snafu v0.6.10
[INFO] [stderr]   Downloaded triple_accel v0.3.4
[INFO] [stderr]   Downloaded maplit v1.0.2
[INFO] [stderr]   Downloaded multimap v0.8.2
[INFO] [stderr]   Downloaded enum-map v0.6.4
[INFO] [stderr]   Downloaded enum-map-derive v0.4.6
[INFO] [stderr]   Downloaded number_prefix v0.3.0
[INFO] [stderr]   Downloaded indicatif v0.15.0
[INFO] [stderr]   Downloaded array-macro v1.0.5
[INFO] [stderr]   Downloaded bstr v0.2.15
[INFO] [stderr]   Downloaded bio-types v0.10.0
[INFO] [stderr]   Downloaded csv v1.1.5
[INFO] [stderr]   Downloaded matrixmultiply v0.2.4
[INFO] [stderr]   Downloaded console v0.14.0
[INFO] [stderr]   Downloaded ordered-float v1.1.1
[INFO] [stderr]   Downloaded bio v0.32.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f92de343a2f48a05f06fb75a07b6adb9d710bdff2e4013cb9b20cee4c85ef2ba
[INFO] running `Command { std: "docker" "start" "-a" "f92de343a2f48a05f06fb75a07b6adb9d710bdff2e4013cb9b20cee4c85ef2ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f92de343a2f48a05f06fb75a07b6adb9d710bdff2e4013cb9b20cee4c85ef2ba", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f92de343a2f48a05f06fb75a07b6adb9d710bdff2e4013cb9b20cee4c85ef2ba", kill_on_drop: false }`
[INFO] [stdout] f92de343a2f48a05f06fb75a07b6adb9d710bdff2e4013cb9b20cee4c85ef2ba
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 72880e155b007a4afa45c5409709c45ca684c776fdd5c8fa187600b69257a99a
[INFO] running `Command { std: "docker" "start" "-a" "72880e155b007a4afa45c5409709c45ca684c776fdd5c8fa187600b69257a99a", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.60
[INFO] [stderr]    Compiling libc v0.2.86
[INFO] [stderr]    Compiling serde_derive v1.0.123
[INFO] [stderr]    Compiling serde v1.0.123
[INFO] [stderr]    Compiling byteorder v1.4.2
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling bytecount v0.6.2
[INFO] [stderr]    Compiling thread_local v1.1.3
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling ordered-float v1.1.1
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling regex v1.4.3
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling terminal_size v0.1.16
[INFO] [stderr]    Compiling getrandom v0.2.2
[INFO] [stderr]    Compiling rand_core v0.6.2
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.3.0
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling rand v0.8.3
[INFO] [stderr]    Compiling console v0.14.0
[INFO] [stderr]    Compiling indicatif v0.15.0
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling enum-map v0.6.4
[INFO] [stderr]    Compiling bio-types v0.10.0
[INFO] [stderr]    Compiling snafu v0.6.10
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.15
[INFO] [stderr]    Compiling multimap v0.8.2
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.5
[INFO] [stderr]    Compiling structopt v0.3.21
[INFO] [stderr]    Compiling make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]    Compiling msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]    Compiling derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stderr]    Compiling simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 40.37s
[INFO] running `Command { std: "docker" "inspect" "72880e155b007a4afa45c5409709c45ca684c776fdd5c8fa187600b69257a99a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "72880e155b007a4afa45c5409709c45ca684c776fdd5c8fa187600b69257a99a", kill_on_drop: false }`
[INFO] [stdout] 72880e155b007a4afa45c5409709c45ca684c776fdd5c8fa187600b69257a99a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d0be391f3de5a46b46a5601a850f34816fb5072ab694db1df995fe713824c0d3
[INFO] running `Command { std: "docker" "start" "-a" "d0be391f3de5a46b46a5601a850f34816fb5072ab694db1df995fe713824c0d3", kill_on_drop: false }`
[INFO] [stderr]    Compiling simple_headers v0.1.0 (/opt/rustwide/workdir/simple_headers)
[INFO] [stderr]    Compiling derep v0.1.0 (/opt/rustwide/workdir/derep)
[INFO] [stderr]    Compiling make_reads v0.1.0 (/opt/rustwide/workdir/make_reads)
[INFO] [stderr]    Compiling msa_pairwise v0.2.0 (/opt/rustwide/workdir/msa_pairwise_identity)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.90s
[INFO] running `Command { std: "docker" "inspect" "d0be391f3de5a46b46a5601a850f34816fb5072ab694db1df995fe713824c0d3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d0be391f3de5a46b46a5601a850f34816fb5072ab694db1df995fe713824c0d3", kill_on_drop: false }`
[INFO] [stdout] d0be391f3de5a46b46a5601a850f34816fb5072ab694db1df995fe713824c0d3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-10/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:a89201d6b5b9fd45c15d5952ece0a0129e7e80cb26ec023fd59cf09bc26f1604" "/opt/rustwide/cargo-home/bin/cargo" "+1.55.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] bf5b64c29709ec11be73858023817d0667853ca171d01d24aeb90ac6b89b0a58
[INFO] running `Command { std: "docker" "start" "-a" "bf5b64c29709ec11be73858023817d0667853ca171d01d24aeb90ac6b89b0a58", kill_on_drop: false }`
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/derep-7bc79253c1a08ddd)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/derep-fffe85bd2eabb85a)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/make_reads-69c46d3133431762)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/make_reads-a1fb2ef64f468b32)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/msa_pairwise-4c292bda8f5b8747)
[INFO] [stdout] running 0 tests
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/msa_pairwise-fee445b94dd7d0ac)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/simple_headers-6b699478dc7cb307)
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests derep
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests make_reads
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests msa_pairwise
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "bf5b64c29709ec11be73858023817d0667853ca171d01d24aeb90ac6b89b0a58", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bf5b64c29709ec11be73858023817d0667853ca171d01d24aeb90ac6b89b0a58", kill_on_drop: false }`
[INFO] [stdout] bf5b64c29709ec11be73858023817d0667853ca171d01d24aeb90ac6b89b0a58