[INFO] fetching crate lib3dmol 0.3.2...
[INFO] documenting lib3dmol-0.3.2 against beta-2021-08-01 for beta-1.55-rustdoc-1
[INFO] extracting crate lib3dmol 0.3.2 into /workspace/builds/worker-6/source
[INFO] validating manifest of crates.io crate lib3dmol 0.3.2 on toolchain beta-2021-08-01
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate lib3dmol 0.3.2
[INFO] finished tweaking crates.io crate lib3dmol 0.3.2
[INFO] tweaked toml for crates.io crate lib3dmol 0.3.2 written to /workspace/builds/worker-6/source/Cargo.toml
[INFO] crate crates.io crate lib3dmol 0.3.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e714b10755eebfd0990ef9a31329814eeff56cebc8c1c42414f347fa837bd8fb
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "e714b10755eebfd0990ef9a31329814eeff56cebc8c1c42414f347fa837bd8fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e714b10755eebfd0990ef9a31329814eeff56cebc8c1c42414f347fa837bd8fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e714b10755eebfd0990ef9a31329814eeff56cebc8c1c42414f347fa837bd8fb", kill_on_drop: false }`
[INFO] [stdout] e714b10755eebfd0990ef9a31329814eeff56cebc8c1c42414f347fa837bd8fb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] d3f07b72224e78b793cc648df1245292e08c32960147becda9007e60856e9b4c
[INFO] running `Command { std: "docker" "start" "-a" "d3f07b72224e78b793cc648df1245292e08c32960147becda9007e60856e9b4c", kill_on_drop: false }`
[INFO] [stderr]     Checking lib3dmol v0.3.2 (/opt/rustwide/workdir)
[INFO] [stderr]  Documenting lib3dmol v0.3.2 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `Structure`
[INFO] [stdout]  --> src/lib.rs:5:33
[INFO] [stdout]   |
[INFO] [stdout] 5 | //! A file is represented as a [`Structure`]
[INFO] [stdout]   |                                 ^^^^^^^^^^^ no item named `Structure` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `Structure`
[INFO] [stdout]  --> src/lib.rs:6:23
[INFO] [stdout]   |
[INFO] [stdout] 6 | //! You can create a [Structure] by parsing with [`read_pdb`] function. Then you can add filters on your Structure.
[INFO] [stdout]   |                       ^^^^^^^^^ no item named `Structure` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `read_pdb`
[INFO] [stdout]  --> src/lib.rs:6:51
[INFO] [stdout]   |
[INFO] [stdout] 6 | //! You can create a [Structure] by parsing with [`read_pdb`] function. Then you can add filters on your Structure.
[INFO] [stdout]   |                                                   ^^^^^^^^^^ no item named `read_pdb` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `Structure`
[INFO] [stdout]  --> src/build/mod.rs:2:63
[INFO] [stdout]   |
[INFO] [stdout] 2 | //! Used to test functions or to build examples. It return a [`Structure`] containing the molecule.
[INFO] [stdout]   |                                                               ^^^^^^^^^^^ no item named `Structure` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `Structure`
[INFO] [stdout]  --> src/build/residue.rs:1:28
[INFO] [stdout]   |
[INFO] [stdout] 1 | //! Build amino acid as a [`Structure`]
[INFO] [stdout]   |                            ^^^^^^^^^^^ no item named `Structure` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `Structure`
[INFO] [stdout]  --> src/build/residue.rs:8:68
[INFO] [stdout]   |
[INFO] [stdout] 8 | /// Build a residue according to its [`ResidueType`] and return a [`Structure`]
[INFO] [stdout]   |                                                                    ^^^^^^^^^^^ no item named `Structure` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `Structure`
[INFO] [stdout]  --> src/parser/mod.rs:1:50
[INFO] [stdout]   |
[INFO] [stdout] 1 | //! Functions to parse files or text and create [`Structure`]
[INFO] [stdout]   |                                                  ^^^^^^^^^^^ no item named `Structure` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `Residue`
[INFO] [stdout]  --> src/structures/atom.rs:3:49
[INFO] [stdout]   |
[INFO] [stdout] 3 | /// An [`Atom`] is a sub-structure linked to a [`Residue`].
[INFO] [stdout]   |                                                 ^^^^^^^^^ no item named `Residue` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `Protein`
[INFO] [stdout]  --> src/structures/chain.rs:5:49
[INFO] [stdout]   |
[INFO] [stdout] 5 | /// A [`Chain`] is a sub-structure linked to a [`Protein`].
[INFO] [stdout]   |                                                 ^^^^^^^^^ no item named `Protein` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `Vector`
[INFO] [stdout]    --> src/structures/structure.rs:162:21
[INFO] [stdout]     |
[INFO] [stdout] 162 |     /// Generate a [`Vector`] of atoms index (u64)
[INFO] [stdout]     |                     ^^^^^^^^ no item named `Vector` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 10 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3.38s
[INFO] running `Command { std: "docker" "inspect" "d3f07b72224e78b793cc648df1245292e08c32960147becda9007e60856e9b4c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d3f07b72224e78b793cc648df1245292e08c32960147becda9007e60856e9b4c", kill_on_drop: false }`
[INFO] [stdout] d3f07b72224e78b793cc648df1245292e08c32960147becda9007e60856e9b4c
