[INFO] fetching crate gchemol-core 0.0.42...
[INFO] documenting gchemol-core-0.0.42 against 1.54.0 for beta-1.55-rustdoc-1
[INFO] extracting crate gchemol-core 0.0.42 into /workspace/builds/worker-98/source
[INFO] validating manifest of crates.io crate gchemol-core 0.0.42 on toolchain 1.54.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate gchemol-core 0.0.42
[INFO] finished tweaking crates.io crate gchemol-core 0.0.42
[INFO] tweaked toml for crates.io crate gchemol-core 0.0.42 written to /workspace/builds/worker-98/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-98/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-98/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 3f8771dcf41ac7f9d0f93149fd2e497ae75b3f2776a66d7b0a39ec7b1b943372
[INFO] running `Command { std: "docker" "start" "-a" "3f8771dcf41ac7f9d0f93149fd2e497ae75b3f2776a66d7b0a39ec7b1b943372", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3f8771dcf41ac7f9d0f93149fd2e497ae75b3f2776a66d7b0a39ec7b1b943372", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3f8771dcf41ac7f9d0f93149fd2e497ae75b3f2776a66d7b0a39ec7b1b943372", kill_on_drop: false }`
[INFO] [stdout] 3f8771dcf41ac7f9d0f93149fd2e497ae75b3f2776a66d7b0a39ec7b1b943372
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-98/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-98/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 61cc59ed266406c70649b1d7079045e83658ac122812b24cb7e923a26affca13
[INFO] running `Command { std: "docker" "start" "-a" "61cc59ed266406c70649b1d7079045e83658ac122812b24cb7e923a26affca13", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.74
[INFO] [stderr]    Compiling libm v0.2.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling typenum v1.13.0
[INFO] [stderr]     Checking regex-syntax v0.6.25
[INFO] [stderr]    Compiling rayon-core v1.9.1
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]     Checking quick-error v1.2.3
[INFO] [stderr]     Checking hashbrown v0.11.2
[INFO] [stderr]     Checking humantime v2.1.0
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking cfg-if v0.1.10
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling num-rational v0.2.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]     Checking itertools v0.8.2
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]     Checking os_pipe v0.9.2
[INFO] [stderr]     Checking shared_child v0.3.5
[INFO] [stderr]     Checking rand_distr v0.2.2
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]     Checking duct v0.13.5
[INFO] [stderr]     Checking humantime v1.3.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.1
[INFO] [stderr]     Checking crossbeam-deque v0.8.1
[INFO] [stderr]     Checking generic-array v0.13.3
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking num-integer v0.1.44
[INFO] [stderr]     Checking regex v1.5.4
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking env_logger v0.7.1
[INFO] [stderr]     Checking env_logger v0.8.4
[INFO] [stderr]     Checking pretty_env_logger v0.4.0
[INFO] [stderr]    Compiling serde_derive v1.0.127
[INFO] [stderr]    Compiling structopt-derive v0.4.15
[INFO] [stderr]     Checking structopt v0.3.22
[INFO] [stderr]     Checking serde v1.0.127
[INFO] [stderr]     Checking toml v0.5.8
[INFO] [stderr]     Checking serde_json v1.0.66
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking bimap v0.4.0
[INFO] [stderr]     Checking envy v0.4.2
[INFO] [stderr]     Checking alga v0.9.3
[INFO] [stderr]     Checking nalgebra v0.20.0
[INFO] [stderr]     Checking gchemol-gut v0.1.5
[INFO] [stderr]     Checking gchemol-graph v0.1.1
[INFO] [stderr]     Checking vecfx v0.1.2
[INFO] [stderr]     Checking octree v0.1.0
[INFO] [stderr]     Checking gchemol-lattice v0.1.0
[INFO] [stderr]     Checking gchemol-neighbors v0.1.0
[INFO] [stderr]  Documenting gchemol-core v0.0.42 (/opt/rustwide/workdir)
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> src/atom.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 | /// https://goldbook.iupac.org/html/A/A00493.html
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://goldbook.iupac.org/html/A/A00493.html>`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> src/bond.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// https://en.wikipedia.org/wiki/Bond_order
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://en.wikipedia.org/wiki/Bond_order>`
[INFO] [stdout]    |
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> src/bond.rs:37:5
[INFO] [stdout]    |
[INFO] [stdout] 37 | /// https://goldbook.iupac.org/html/B/B00697.html
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://goldbook.iupac.org/html/B/B00697.html>`
[INFO] [stdout]    |
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> src/molecule.rs:31:8
[INFO] [stdout]    |
[INFO] [stdout] 31 | /// 1. http://goldbook.iupac.org/M03986.html
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<http://goldbook.iupac.org/M03986.html>`
[INFO] [stdout]    |
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> src/molecule.rs:32:8
[INFO] [stdout]    |
[INFO] [stdout] 32 | /// 2. https://en.wikipedia.org/wiki/Molecular_entity
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://en.wikipedia.org/wiki/Molecular_entity>`
[INFO] [stdout]    |
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> src/atom.rs:23:5
[INFO] [stdout]    |
[INFO] [stdout] 23 | /// https://goldbook.iupac.org/html/A/A00493.html
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://goldbook.iupac.org/html/A/A00493.html>`
[INFO] [stdout]    |
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 6 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 04s
[INFO] running `Command { std: "docker" "inspect" "61cc59ed266406c70649b1d7079045e83658ac122812b24cb7e923a26affca13", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "61cc59ed266406c70649b1d7079045e83658ac122812b24cb7e923a26affca13", kill_on_drop: false }`
[INFO] [stdout] 61cc59ed266406c70649b1d7079045e83658ac122812b24cb7e923a26affca13
