[INFO] fetching crate perbase 0.7.3...
[INFO] documenting perbase-0.7.3 against 1.54.0 for beta-1.55-rustdoc-1
[INFO] extracting crate perbase 0.7.3 into /workspace/builds/worker-17/source
[INFO] validating manifest of crates.io crate perbase 0.7.3 on toolchain 1.54.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate perbase 0.7.3
[INFO] finished tweaking crates.io crate perbase 0.7.3
[INFO] tweaked toml for crates.io crate perbase 0.7.3 written to /workspace/builds/worker-17/source/Cargo.toml
[INFO] crate crates.io crate perbase 0.7.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d374c4aa3fbb90a19e78902fde9e623de36542eba64a33f6c8bd791c8464a8ee
[INFO] running `Command { std: "docker" "start" "-a" "d374c4aa3fbb90a19e78902fde9e623de36542eba64a33f6c8bd791c8464a8ee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d374c4aa3fbb90a19e78902fde9e623de36542eba64a33f6c8bd791c8464a8ee", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d374c4aa3fbb90a19e78902fde9e623de36542eba64a33f6c8bd791c8464a8ee", kill_on_drop: false }`
[INFO] [stdout] d374c4aa3fbb90a19e78902fde9e623de36542eba64a33f6c8bd791c8464a8ee
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-17/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 1cf590ae75ac27ae492b3f59b70e9fb7a10d20f1c38a2b4ca93fc9d68b018738
[INFO] running `Command { std: "docker" "start" "-a" "1cf590ae75ac27ae492b3f59b70e9fb7a10d20f1c38a2b4ca93fc9d68b018738", kill_on_drop: false }`
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[INFO] [stderr]    Compiling proc-macro2 v1.0.27
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[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking rust-lapper v0.5.1
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]    Compiling openssl-src v111.15.0+1.1.1k
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[INFO] [stderr]    Compiling hts-sys v1.11.1-fix2
[INFO] [stderr]    Compiling openssl-sys v0.9.65
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[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.26
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling snafu-derive v0.6.10
[INFO] [stderr]    Compiling structopt-derive v0.4.15
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking thiserror v1.0.26
[INFO] [stderr]     Checking bio-types v0.12.0
[INFO] [stderr]     Checking snafu v0.6.10
[INFO] [stderr]     Checking bstr v0.2.16
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking smartstring v0.2.7
[INFO] [stderr]     Checking rust-htslib v0.36.0
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking globset v0.4.8
[INFO] [stderr]     Checking grep-cli v0.1.6
[INFO] [stderr]     Checking structopt v0.3.22
[INFO] [stderr]     Checking perbase v0.7.3 (/opt/rustwide/workdir)
[INFO] [stderr]  Documenting perbase v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/lib/reference.rs:3:19
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Borrowed from https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use an automatic link instead: `<https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs>`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 1 warning emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/base_depth.rs:136:32
[INFO] [stdout]     |
[INFO] [stdout] 136 | /// Holds the info needed for [par_io::RegionProcessor] implementation
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::ReadFilter`
[INFO] [stdout]    --> src/commands/base_depth.rs:148:28
[INFO] [stdout]     |
[INFO] [stdout] 148 |     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout]     |                            ^^^^^^^^^^^^^^^^^^^^ no item named `position` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:145:32
[INFO] [stdout]     |
[INFO] [stdout] 145 | /// Holds the info needed for [par_io::RegionProcessor] implementation
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::ReadFilter`
[INFO] [stdout]    --> src/commands/only_depth.rs:157:28
[INFO] [stdout]     |
[INFO] [stdout] 157 |     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout]     |                            ^^^^^^^^^^^^^^^^^^^^ no item named `position` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/base_depth.rs:191:16
[INFO] [stdout]     |
[INFO] [stdout] 191 | /// Implement [par_io::RegionProcessor] for [BaseProcessor]
[INFO] [stdout]     |                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `pipeup_position::PileupPosition`
[INFO] [stdout]    --> src/commands/base_depth.rs:193:21
[INFO] [stdout]     |
[INFO] [stdout] 193 |     /// Objects of [pipeup_position::PileupPosition] will be returned by each call to [BaseProcessor::process_region]
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `pipeup_position` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:415:16
[INFO] [stdout]     |
[INFO] [stdout] 415 | /// Implement [par_io::RegionProcessor] for [SimpleProcessor]
[INFO] [stdout]     |                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `SimpleProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:415:46
[INFO] [stdout]     |
[INFO] [stdout] 415 | /// Implement [par_io::RegionProcessor] for [SimpleProcessor]
[INFO] [stdout]     |                                              ^^^^^^^^^^^^^^^ no item named `SimpleProcessor` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::Position`
[INFO] [stdout]    --> src/commands/only_depth.rs:417:21
[INFO] [stdout]     |
[INFO] [stdout] 417 |     /// Objects of [position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^ no item named `position` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `SimpleProcessor::process_region`
[INFO] [stdout]    --> src/commands/only_depth.rs:417:75
[INFO] [stdout]     |
[INFO] [stdout] 417 |     /// Objects of [position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout]     |                                                                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `SimpleProcessor` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 10 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 49.03s
[INFO] running `Command { std: "docker" "inspect" "1cf590ae75ac27ae492b3f59b70e9fb7a10d20f1c38a2b4ca93fc9d68b018738", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1cf590ae75ac27ae492b3f59b70e9fb7a10d20f1c38a2b4ca93fc9d68b018738", kill_on_drop: false }`
[INFO] [stdout] 1cf590ae75ac27ae492b3f59b70e9fb7a10d20f1c38a2b4ca93fc9d68b018738
