[INFO] cloning repository https://github.com/IMTMarburg/mbf_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/IMTMarburg/mbf_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7b70a70ee0d7c4e8eb11f2e3220c8173b0ac01c9
[INFO] documenting IMTMarburg/mbf_bam against beta-2021-08-01 for beta-1.55-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FIMTMarburg%2Fmbf_bam" "/workspace/builds/worker-8/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-8/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/IMTMarburg/mbf_bam on toolchain beta-2021-08-01
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/IMTMarburg/mbf_bam
[INFO] finished tweaking git repo https://github.com/IMTMarburg/mbf_bam
[INFO] tweaked toml for git repo https://github.com/IMTMarburg/mbf_bam written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate git repo https://github.com/IMTMarburg/mbf_bam already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f417fc0db56df06d36de44df660f0dfe40de2aed86a4197b33be0aac0a43de96
[INFO] running `Command { std: "docker" "start" "-a" "f417fc0db56df06d36de44df660f0dfe40de2aed86a4197b33be0aac0a43de96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f417fc0db56df06d36de44df660f0dfe40de2aed86a4197b33be0aac0a43de96", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f417fc0db56df06d36de44df660f0dfe40de2aed86a4197b33be0aac0a43de96", kill_on_drop: false }`
[INFO] [stdout] f417fc0db56df06d36de44df660f0dfe40de2aed86a4197b33be0aac0a43de96
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 57af48775dbb105262ad28c8c5a6fbc0e43bad809a01d2710a30be3ee9a753d1
[INFO] running `Command { std: "docker" "start" "-a" "57af48775dbb105262ad28c8c5a6fbc0e43bad809a01d2710a30be3ee9a753d1", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.79
[INFO] [stderr]    Compiling crossbeam-utils v0.8.5
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.5
[INFO] [stderr]    Compiling either v1.5.2
[INFO] [stderr]    Compiling syn v1.0.73
[INFO] [stderr]    Compiling proc-macro2 v0.4.27
[INFO] [stderr]    Compiling syn v0.15.30
[INFO] [stderr]    Compiling serde v1.0.90
[INFO] [stderr]    Compiling pyo3-build-config v0.14.1
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling once_cell v1.8.0
[INFO] [stderr]    Compiling quick-error v1.2.2
[INFO] [stderr]    Compiling unicode-segmentation v1.8.0
[INFO] [stderr]    Compiling paste v1.0.5
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling unindent v0.1.7
[INFO] [stderr]    Compiling failure_derive v0.1.5
[INFO] [stderr]     Checking regex-automata v0.1.10
[INFO] [stderr]    Compiling anyhow v1.0.42
[INFO] [stderr]     Checking hashbrown v0.11.2
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]    Compiling bio v0.37.0
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking bytecount v0.6.2
[INFO] [stderr]     Checking strum v0.20.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling memoffset v0.6.4
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling memchr v2.2.1
[INFO] [stderr]     Checking matrixmultiply v0.3.1
[INFO] [stderr]     Checking instant v0.1.7
[INFO] [stderr]    Compiling paste-impl v0.1.18
[INFO] [stderr]     Checking unicode-normalization v0.1.8
[INFO] [stderr]    Compiling backtrace v0.3.15
[INFO] [stderr]    Compiling proc-macro2 v1.0.27
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking bit-set v0.5.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]     Checking aho-corasick v0.7.6
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v1.0.9
[INFO] [stderr]    Compiling num_cpus v1.10.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.1
[INFO] [stderr]     Checking paste v0.1.18
[INFO] [stderr]    Compiling pyo3 v0.14.1
[INFO] [stderr]     Checking getrandom v0.2.3
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]     Checking parking_lot_core v0.8.0
[INFO] [stderr]     Checking flate2 v1.0.13
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]    Compiling quote v0.6.12
[INFO] [stderr]     Checking regex v1.3.1
[INFO] [stderr]     Checking crossbeam-deque v0.8.0
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking parking_lot v0.11.0
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]     Checking rayon-core v1.9.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking num-complex v0.3.1
[INFO] [stderr]     Checking num-integer v0.1.44
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.0.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking rand v0.8.4
[INFO] [stderr]     Checking url v2.1.1
[INFO] [stderr]    Compiling rayon v1.5.1
[INFO] [stderr]     Checking num-rational v0.3.2
[INFO] [stderr]     Checking simba v0.4.0
[INFO] [stderr]     Checking rand_distr v0.4.1
[INFO] [stderr]    Compiling synstructure v0.10.1
[INFO] [stderr]    Compiling cc v1.0.35
[INFO] [stderr]    Compiling serde_derive v1.0.90
[INFO] [stderr]    Compiling openssl-src v111.12.0+1.1.1h
[INFO] [stderr]    Compiling pyo3-macros-backend v0.14.1
[INFO] [stderr]    Compiling openssl-sys v0.9.65
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling backtrace-sys v0.1.28
[INFO] [stderr]    Compiling hts-sys v2.0.1
[INFO] [stderr]     Checking failure v0.1.5
[INFO] [stderr]    Compiling thiserror-impl v1.0.21
[INFO] [stderr]    Compiling strum_macros v0.20.1
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling enum-map-derive v0.4.6
[INFO] [stderr]    Compiling indoc-impl v0.3.6
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]     Checking nalgebra v0.26.2
[INFO] [stderr]    Compiling pyo3-macros v0.14.1
[INFO] [stderr]     Checking enum-map v0.6.4
[INFO] [stderr]     Checking indoc v0.3.6
[INFO] [stderr]     Checking thiserror v1.0.21
[INFO] [stderr]     Checking bio-types v0.12.0
[INFO] [stderr]     Checking bstr v0.2.15
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking vec_map v0.8.1
[INFO] [stderr]     Checking csv v1.1.6
[INFO] [stderr]     Checking statrs v0.14.0
[INFO] [stderr]     Checking rust-htslib v0.38.2
[INFO] [stderr]  Documenting mbf_bam v0.1.8 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 39s
[INFO] running `Command { std: "docker" "inspect" "57af48775dbb105262ad28c8c5a6fbc0e43bad809a01d2710a30be3ee9a753d1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "57af48775dbb105262ad28c8c5a6fbc0e43bad809a01d2710a30be3ee9a753d1", kill_on_drop: false }`
[INFO] [stdout] 57af48775dbb105262ad28c8c5a6fbc0e43bad809a01d2710a30be3ee9a753d1
