[INFO] fetching crate genomic_interval_pipeline 0.1.3...
[INFO] documenting genomic_interval_pipeline-0.1.3 against 1.54.0 for beta-1.55-rustdoc-1
[INFO] extracting crate genomic_interval_pipeline 0.1.3 into /workspace/builds/worker-74/source
[INFO] validating manifest of crates.io crate genomic_interval_pipeline 0.1.3 on toolchain 1.54.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate genomic_interval_pipeline 0.1.3
[INFO] finished tweaking crates.io crate genomic_interval_pipeline 0.1.3
[INFO] tweaked toml for crates.io crate genomic_interval_pipeline 0.1.3 written to /workspace/builds/worker-74/source/Cargo.toml
[INFO] crate crates.io crate genomic_interval_pipeline 0.1.3 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 41c483425cd50b25ef9e0a08bdce245a6e3a1c44dc887e48507eb283019c5809
[INFO] running `Command { std: "docker" "start" "-a" "41c483425cd50b25ef9e0a08bdce245a6e3a1c44dc887e48507eb283019c5809", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "41c483425cd50b25ef9e0a08bdce245a6e3a1c44dc887e48507eb283019c5809", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "41c483425cd50b25ef9e0a08bdce245a6e3a1c44dc887e48507eb283019c5809", kill_on_drop: false }`
[INFO] [stdout] 41c483425cd50b25ef9e0a08bdce245a6e3a1c44dc887e48507eb283019c5809
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-74/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fce85d9a19baa808fb12f9d84efc1e9ca2d2d7a8b6bbf43e78d8a0c4f0c81b50
[INFO] running `Command { std: "docker" "start" "-a" "fce85d9a19baa808fb12f9d84efc1e9ca2d2d7a8b6bbf43e78d8a0c4f0c81b50", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.80
[INFO] [stderr]    Compiling memchr v2.3.4
[INFO] [stderr]    Compiling syn v1.0.50
[INFO] [stderr]    Compiling regex-syntax v0.6.21
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]     Checking matches v0.1.8
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]     Checking tinyvec_macros v0.1.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling serde v1.0.117
[INFO] [stderr]    Compiling serde_derive v1.0.117
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]     Checking smallvec v1.5.0
[INFO] [stderr]     Checking percent-encoding v2.1.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling log v0.4.11
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling unicode-segmentation v1.7.0
[INFO] [stderr]     Checking adler v0.2.3
[INFO] [stderr]     Checking ascii v1.0.0
[INFO] [stderr]    Compiling hdf5 v0.7.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling libloading v0.6.5
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling crossbeam-utils v0.7.2
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling miniz_oxide v0.4.3
[INFO] [stderr]     Checking lock_api v0.3.4
[INFO] [stderr]     Checking memrange v0.1.3
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]     Checking tinyvec v1.1.0
[INFO] [stderr]     Checking humantime v1.3.0
[INFO] [stderr]     Checking matrixmultiply v0.2.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking unicode-bidi v0.3.4
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]     Checking form_urlencoded v1.0.0
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking unicode-normalization v0.1.16
[INFO] [stderr]    Compiling aho-corasick v0.7.15
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]     Checking idna v0.2.0
[INFO] [stderr]     Checking regex v1.4.2
[INFO] [stderr]     Checking url v2.2.0
[INFO] [stderr]     Checking crossbeam-channel v0.4.4
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking rand v0.4.6
[INFO] [stderr]     Checking time v0.1.44
[INFO] [stderr]     Checking parking_lot_core v0.7.2
[INFO] [stderr]     Checking hdf5-types v0.7.0
[INFO] [stderr]     Checking flate2 v1.0.19
[INFO] [stderr]    Compiling cc v1.0.65
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking env_logger v0.7.1
[INFO] [stderr]     Checking pbr v1.0.3
[INFO] [stderr]     Checking parking_lot v0.10.2
[INFO] [stderr]    Compiling openssl-src v111.12.0+1.1.1h
[INFO] [stderr]     Checking rand v0.3.23
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking theban_interval_tree v0.7.1
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling curl-sys v0.4.38+curl-7.73.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.17
[INFO] [stderr]    Compiling hts-sys v1.11.1-fix1
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-908a8f6bc3e27abf/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55fa96b6c050 - std::backtrace_rs::backtrace::libunwind::trace::h34055254b57d8e79
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x55fa96b6c050 - std::backtrace_rs::backtrace::trace_unsynchronized::h8f1e3fbd9afff6ec
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55fa96b6c050 - std::sys_common::backtrace::_print_fmt::h3a99a796b770c360
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x55fa96b6c050 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h32d1f94a80615d18
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x55fa96b8a5dc - core::fmt::write::h306731c068f7162c
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/fmt/mod.rs:1110:17
[INFO] [stderr]      5:     0x55fa96b695b5 - std::io::Write::write_fmt::hd2fa90334eee2a21
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/io/mod.rs:1588:15
[INFO] [stderr]      6:     0x55fa96b6e0bb - std::sys_common::backtrace::_print::h5abaa2601a852287
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x55fa96b6e0bb - std::sys_common::backtrace::print::h8d81445442bb638f
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x55fa96b6e0bb - std::panicking::default_hook::{{closure}}::hcfe804496a9fa747
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x55fa96b6db91 - std::panicking::default_hook::hbea8e3ccf2ba8901
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x55fa96b6e784 - std::panicking::rust_panic_with_hook::h7ee9e1a2d0f8975a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:622:17
[INFO] [stderr]     11:     0x55fa96994a53 - std::panicking::begin_panic::{{closure}}::h0f72d4324b7e1a79
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:542:9
[INFO] [stderr]     12:     0x55fa969764a9 - std::sys_common::backtrace::__rust_end_short_backtrace::h13e64a4e74da607f
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x55fa96994989 - std::panicking::begin_panic::h20e2aefc3d1528ce
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:541:12
[INFO] [stderr]     14:     0x55fa96964d97 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hc90f97fad6e5ac0f
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]     15:     0x55fa969665cb - build_script_build::main::h17bb14120cbfd251
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9
[INFO] [stderr]     16:     0x55fa96969c1b - core::ops::function::FnOnce::call_once::h836fc86632ca43f8
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x55fa96972a2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h68dc4b493add9d4a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x55fa96971021 - std::rt::lang_start::{{closure}}::h648510bdddbac27e
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:49:18
[INFO] [stderr]     19:     0x55fa96b6ec89 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h2aabc384aab89b7b
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x55fa96b6ec89 - std::panicking::try::do_call::hc5fcacb7a85fc7b1
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:401:40
[INFO] [stderr]     21:     0x55fa96b6ec89 - std::panicking::try::hb5d9603af3abbe3a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:365:19
[INFO] [stderr]     22:     0x55fa96b6ec89 - std::panic::catch_unwind::h98fe6ac3925e64b4
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panic.rs:434:14
[INFO] [stderr]     23:     0x55fa96b6ec89 - std::rt::lang_start_internal::h22ac7383c516f93e
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:34:21
[INFO] [stderr]     24:     0x55fa96971000 - std::rt::lang_start::h5761e99960848f3b
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:48:5
[INFO] [stderr]     25:     0x55fa96967abc - main
[INFO] [stderr]     26:     0x7f540d6980b3 - __libc_start_main
[INFO] [stderr]     27:     0x55fa9695ff0e - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "fce85d9a19baa808fb12f9d84efc1e9ca2d2d7a8b6bbf43e78d8a0c4f0c81b50", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fce85d9a19baa808fb12f9d84efc1e9ca2d2d7a8b6bbf43e78d8a0c4f0c81b50", kill_on_drop: false }`
[INFO] [stdout] fce85d9a19baa808fb12f9d84efc1e9ca2d2d7a8b6bbf43e78d8a0c4f0c81b50
