[INFO] cloning repository https://github.com/preiter93/ndspectral
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/preiter93/ndspectral" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Fndspectral", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Fndspectral'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 36b14402299612cf7b4f3f5e03d0c4f3af82d966
[INFO] documenting preiter93/ndspectral against 1.54.0 for beta-1.55-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fpreiter93%2Fndspectral" "/workspace/builds/worker-5/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/preiter93/ndspectral on toolchain 1.54.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/preiter93/ndspectral
[INFO] finished tweaking git repo https://github.com/preiter93/ndspectral
[INFO] tweaked toml for git repo https://github.com/preiter93/ndspectral written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] crate git repo https://github.com/preiter93/ndspectral already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 4c3b890849244662e9605178e7d278bc1967e1d38c85a7fab2198e625a29dc2a
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "4c3b890849244662e9605178e7d278bc1967e1d38c85a7fab2198e625a29dc2a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4c3b890849244662e9605178e7d278bc1967e1d38c85a7fab2198e625a29dc2a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4c3b890849244662e9605178e7d278bc1967e1d38c85a7fab2198e625a29dc2a", kill_on_drop: false }`
[INFO] [stdout] 4c3b890849244662e9605178e7d278bc1967e1d38c85a7fab2198e625a29dc2a
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 3f108f84b1ced7a76529b8f79edcec0cfdf3a9791179e4e1defaf905a945f948
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "3f108f84b1ced7a76529b8f79edcec0cfdf3a9791179e4e1defaf905a945f948", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.127
[INFO] [stderr]     Checking strength_reduce v0.2.3
[INFO] [stderr]    Compiling hdf5-types v0.7.1 (https://github.com/preiter93/hdf5-interface?branch=master#a57f2a5a)
[INFO] [stderr]     Checking ascii v1.0.0
[INFO] [stderr]    Compiling hdf5 v0.7.1 (https://github.com/preiter93/hdf5-interface?branch=master#a57f2a5a)
[INFO] [stderr]    Compiling once_cell v1.8.0
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling libloading v0.7.0
[INFO] [stderr]     Checking matrixmultiply v0.3.1
[INFO] [stderr]    Compiling walkdir v2.3.2
[INFO] [stderr]     Checking getrandom v0.2.3
[INFO] [stderr]     Checking cblas-sys v0.1.4
[INFO] [stderr]     Checking lapack-sys v0.12.1
[INFO] [stderr]    Compiling dirs-sys v0.3.6
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]    Compiling hdf5-derive v0.7.1 (https://github.com/preiter93/hdf5-interface?branch=master#a57f2a5a)
[INFO] [stderr]    Compiling thiserror v1.0.26
[INFO] [stderr]     Checking rayon-core v1.9.1
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]    Compiling dirs v3.0.2
[INFO] [stderr]    Compiling enum_dispatch v0.3.7
[INFO] [stderr]    Compiling hdf5-sys v0.7.1 (https://github.com/preiter93/hdf5-interface?branch=master#a57f2a5a)
[INFO] [stderr]    Compiling openblas-build v0.1.1
[INFO] [stderr]     Checking rand_chacha v0.3.1
[INFO] [stderr]     Checking rand v0.8.4
[INFO] [stderr]     Checking rayon v1.5.1
[INFO] [stderr]    Compiling openblas-src v0.10.4
[INFO] [stderr]     Checking primal-check v0.3.1
[INFO] [stderr]     Checking transpose v0.2.1
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1 (https://github.com/preiter93/hdf5-interface?branch=master#a57f2a5a)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-986168b47ee6c5d3/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/git/checkouts/hdf5-interface-54d07fefc7a3fa22/a57f2a5/hdf5-rust/hdf5-sys/build.rs:548:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55d812743d30 - std::backtrace_rs::backtrace::libunwind::trace::h34055254b57d8e79
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x55d812743d30 - std::backtrace_rs::backtrace::trace_unsynchronized::h8f1e3fbd9afff6ec
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55d812743d30 - std::sys_common::backtrace::_print_fmt::h3a99a796b770c360
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x55d812743d30 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h32d1f94a80615d18
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x55d8127622bc - core::fmt::write::h306731c068f7162c
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/fmt/mod.rs:1110:17
[INFO] [stderr]      5:     0x55d812741295 - std::io::Write::write_fmt::hd2fa90334eee2a21
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/io/mod.rs:1588:15
[INFO] [stderr]      6:     0x55d812745d9b - std::sys_common::backtrace::_print::h5abaa2601a852287
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x55d812745d9b - std::sys_common::backtrace::print::h8d81445442bb638f
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x55d812745d9b - std::panicking::default_hook::{{closure}}::hcfe804496a9fa747
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x55d812745871 - std::panicking::default_hook::hbea8e3ccf2ba8901
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x55d812746464 - std::panicking::rust_panic_with_hook::h7ee9e1a2d0f8975a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:622:17
[INFO] [stderr]     11:     0x55d812567713 - std::panicking::begin_panic::{{closure}}::h0f72d4324b7e1a79
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:542:9
[INFO] [stderr]     12:     0x55d812549169 - std::sys_common::backtrace::__rust_end_short_backtrace::h13e64a4e74da607f
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x55d812567649 - std::panicking::begin_panic::h20e2aefc3d1528ce
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:541:12
[INFO] [stderr]     14:     0x55d812536e47 - build_script_build::LibrarySearcher::try_locate_hdf5_library::hb674fff191d49331
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/git/checkouts/hdf5-interface-54d07fefc7a3fa22/a57f2a5/hdf5-rust/hdf5-sys/build.rs:548:13
[INFO] [stderr]     15:     0x55d81253867b - build_script_build::main::h2340e2cb2ceaf2bb
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/git/checkouts/hdf5-interface-54d07fefc7a3fa22/a57f2a5/hdf5-rust/hdf5-sys/build.rs:646:9
[INFO] [stderr]     16:     0x55d81253bd7b - core::ops::function::FnOnce::call_once::h6fa50a2c8732cf94
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x55d81254516e - std::sys_common::backtrace::__rust_begin_short_backtrace::h99579d99f8a47ec6
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x55d812544001 - std::rt::lang_start::{{closure}}::h013fcae714222d5b
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:49:18
[INFO] [stderr]     19:     0x55d812746969 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h2aabc384aab89b7b
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x55d812746969 - std::panicking::try::do_call::hc5fcacb7a85fc7b1
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:401:40
[INFO] [stderr]     21:     0x55d812746969 - std::panicking::try::hb5d9603af3abbe3a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:365:19
[INFO] [stderr]     22:     0x55d812746969 - std::panic::catch_unwind::h98fe6ac3925e64b4
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panic.rs:434:14
[INFO] [stderr]     23:     0x55d812746969 - std::rt::lang_start_internal::h22ac7383c516f93e
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:34:21
[INFO] [stderr]     24:     0x55d812543fe0 - std::rt::lang_start::h6217764fc6fc99a3
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:48:5
[INFO] [stderr]     25:     0x55d812539b6c - main
[INFO] [stderr]     26:     0x7f4326a390b3 - __libc_start_main
[INFO] [stderr]     27:     0x55d812531f0e - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "3f108f84b1ced7a76529b8f79edcec0cfdf3a9791179e4e1defaf905a945f948", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3f108f84b1ced7a76529b8f79edcec0cfdf3a9791179e4e1defaf905a945f948", kill_on_drop: false }`
[INFO] [stdout] 3f108f84b1ced7a76529b8f79edcec0cfdf3a9791179e4e1defaf905a945f948
