[INFO] cloning repository https://github.com/jacg/petalo
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/jacg/petalo" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjacg%2Fpetalo", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjacg%2Fpetalo'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 65acfccd3e6430bc9920597f988a0c21b31c89f6
[INFO] documenting jacg/petalo against 1.54.0 for beta-1.55-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjacg%2Fpetalo" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/jacg/petalo on toolchain 1.54.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/jacg/petalo
[INFO] finished tweaking git repo https://github.com/jacg/petalo
[INFO] tweaked toml for git repo https://github.com/jacg/petalo written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate git repo https://github.com/jacg/petalo already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] c8fa2d8353d14a590b03557b40638f1ebcb8966d5b9887b70567b0d4e7a11ce0
[INFO] running `Command { std: "docker" "start" "-a" "c8fa2d8353d14a590b03557b40638f1ebcb8966d5b9887b70567b0d4e7a11ce0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c8fa2d8353d14a590b03557b40638f1ebcb8966d5b9887b70567b0d4e7a11ce0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c8fa2d8353d14a590b03557b40638f1ebcb8966d5b9887b70567b0d4e7a11ce0", kill_on_drop: false }`
[INFO] [stdout] c8fa2d8353d14a590b03557b40638f1ebcb8966d5b9887b70567b0d4e7a11ce0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] baa869bf51b4670eef89f39f16056f4b215d7807a0f3ac1f1463b912f7290249
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "baa869bf51b4670eef89f39f16056f4b215d7807a0f3ac1f1463b912f7290249", kill_on_drop: false }`
[INFO] [stderr]    Compiling log v0.4.14
[INFO] [stderr]    Compiling serde v1.0.126
[INFO] [stderr]    Compiling ndarray v0.14.0
[INFO] [stderr]     Checking blas-src v0.6.1
[INFO] [stderr]    Compiling bindgen v0.57.0
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling winit v0.23.0
[INFO] [stderr]    Compiling paste v1.0.5
[INFO] [stderr]    Compiling linfa v0.4.0
[INFO] [stderr]     Checking fixedbitset v0.2.0
[INFO] [stderr]     Checking ascii v1.0.0
[INFO] [stderr]     Checking linked-hash-map v0.5.4
[INFO] [stderr]     Checking slotmap v0.4.0
[INFO] [stderr]     Checking bit-vec v0.5.1
[INFO] [stderr]    Compiling hdf5 v0.7.1
[INFO] [stderr]     Checking array-init v2.0.0
[INFO] [stderr]     Checking number_prefix v0.4.0
[INFO] [stderr]     Checking glow v0.6.1
[INFO] [stderr]    Compiling num-traits v0.2.14
[INFO] [stderr]    Compiling num-integer v0.1.44
[INFO] [stderr]    Compiling memoffset v0.5.6
[INFO] [stderr]     Checking instant v0.1.9
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling libloading v0.6.7
[INFO] [stderr]    Compiling libloading v0.7.0
[INFO] [stderr]     Checking matrixmultiply v0.2.4
[INFO] [stderr]     Checking itertools v0.9.0
[INFO] [stderr]     Checking itertools v0.10.1
[INFO] [stderr]    Compiling clang-sys v1.2.0
[INFO] [stderr]     Checking stb_truetype v0.3.1
[INFO] [stderr]    Compiling libc v0.2.95
[INFO] [stderr]    Compiling memchr v2.4.0
[INFO] [stderr]     Checking getrandom v0.1.16
[INFO] [stderr]     Checking getrandom v0.2.3
[INFO] [stderr]     Checking cblas-sys v0.1.4
[INFO] [stderr]     Checking parking_lot_core v0.8.3
[INFO] [stderr]     Checking lapack-sys v0.12.1
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking terminal_size v0.1.17
[INFO] [stderr]     Checking hdf5-types v0.7.1
[INFO] [stderr]     Checking nom v6.1.2
[INFO] [stderr]    Compiling paste-impl v0.1.18
[INFO] [stderr]     Checking rand_core v0.5.1
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking rand_core v0.6.3
[INFO] [stderr]     Checking console v0.14.1
[INFO] [stderr]     Checking parking_lot v0.11.1
[INFO] [stderr]     Checking calloop v0.6.5
[INFO] [stderr]     Checking mio v0.6.23
[INFO] [stderr]    Compiling thiserror-impl v1.0.25
[INFO] [stderr]    Compiling binwrite_derive v0.2.1
[INFO] [stderr]    Compiling hdf5-derive v0.7.1
[INFO] [stderr]    Compiling binrw_derive v0.4.0
[INFO] [stderr]    Compiling gl_generator v0.14.0
[INFO] [stderr]     Checking rand_chacha v0.2.2
[INFO] [stderr]    Compiling aho-corasick v0.7.18
[INFO] [stderr]     Checking rand_chacha v0.3.0
[INFO] [stderr]     Checking rand_isaac v0.3.0
[INFO] [stderr]     Checking indicatif v0.16.2
[INFO] [stderr]     Checking mio-extras v2.0.6
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking rayon v1.5.1
[INFO] [stderr]     Checking rand v0.7.3
[INFO] [stderr]     Checking paste v0.1.18
[INFO] [stderr]     Checking crossbeam-epoch v0.8.2
[INFO] [stderr]     Checking approx v0.4.0
[INFO] [stderr]     Checking noisy_float v0.1.15
[INFO] [stderr]     Checking approx v0.3.2
[INFO] [stderr]     Checking ordered-float v1.1.1
[INFO] [stderr]     Checking ordered-float v2.5.1
[INFO] [stderr]     Checking uom v0.31.1
[INFO] [stderr]     Checking rand v0.8.3
[INFO] [stderr]    Compiling which v3.1.1
[INFO] [stderr]     Checking xcursor v0.3.3
[INFO] [stderr]    Compiling regex v1.5.4
[INFO] [stderr]    Compiling structopt-derive v0.4.14
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]     Checking num-rational v0.3.2
[INFO] [stderr]     Checking num-iter v0.1.42
[INFO] [stderr]     Checking rand_distr v0.3.0
[INFO] [stderr]    Compiling glutin_egl_sys v0.1.5
[INFO] [stderr]    Compiling glutin_glx_sys v0.1.7
[INFO] [stderr]     Checking wayland-cursor v0.28.5
[INFO] [stderr]     Checking rusttype v0.8.3
[INFO] [stderr]     Checking binwrite v0.2.1
[INFO] [stderr]     Checking thiserror v1.0.25
[INFO] [stderr]    Compiling cexpr v0.4.0
[INFO] [stderr]     Checking rand_distr v0.4.1
[INFO] [stderr]     Checking smithay-client-toolkit v0.12.3
[INFO] [stderr]     Checking jpeg-decoder v0.1.22
[INFO] [stderr]     Checking partitions v0.2.4
[INFO] [stderr]    Compiling env_logger v0.8.3
[INFO] [stderr]     Checking tiff v0.6.1
[INFO] [stderr]     Checking structopt v0.3.21
[INFO] [stderr]     Checking num-complex v0.3.1
[INFO] [stderr]     Checking image v0.23.14
[INFO] [stderr]     Checking lapack v0.17.0
[INFO] [stderr]     Checking cauchy v0.3.0
[INFO] [stderr]     Checking simba v0.3.1
[INFO] [stderr]    Compiling hdf5-sys v0.7.1
[INFO] [stderr]     Checking binrw v0.4.0
[INFO] [stderr]     Checking glutin v0.25.1
[INFO] [stderr]     Checking lax v0.1.0
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-ad2891440aaace6f/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x558a82dee020 - std::backtrace_rs::backtrace::libunwind::trace::h34055254b57d8e79
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x558a82dee020 - std::backtrace_rs::backtrace::trace_unsynchronized::h8f1e3fbd9afff6ec
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x558a82dee020 - std::sys_common::backtrace::_print_fmt::h3a99a796b770c360
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x558a82dee020 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h32d1f94a80615d18
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x558a82e0c5ac - core::fmt::write::h306731c068f7162c
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/fmt/mod.rs:1110:17
[INFO] [stderr]      5:     0x558a82deb585 - std::io::Write::write_fmt::hd2fa90334eee2a21
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/io/mod.rs:1588:15
[INFO] [stderr]      6:     0x558a82df008b - std::sys_common::backtrace::_print::h5abaa2601a852287
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x558a82df008b - std::sys_common::backtrace::print::h8d81445442bb638f
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x558a82df008b - std::panicking::default_hook::{{closure}}::hcfe804496a9fa747
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x558a82defb61 - std::panicking::default_hook::hbea8e3ccf2ba8901
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x558a82df0754 - std::panicking::rust_panic_with_hook::h7ee9e1a2d0f8975a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:622:17
[INFO] [stderr]     11:     0x558a82c11a03 - std::panicking::begin_panic::{{closure}}::h0f72d4324b7e1a79
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:542:9
[INFO] [stderr]     12:     0x558a82bf3459 - std::sys_common::backtrace::__rust_end_short_backtrace::h13e64a4e74da607f
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x558a82c11939 - std::panicking::begin_panic::h20e2aefc3d1528ce
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:541:12
[INFO] [stderr]     14:     0x558a82be1eb7 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h3c34333bfef928c1
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:549:13
[INFO] [stderr]     15:     0x558a82be36eb - build_script_build::main::h71514ba6abd4440a
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.1/build.rs:647:9
[INFO] [stderr]     16:     0x558a82be82eb - core::ops::function::FnOnce::call_once::h1ca5fe29d139a6a1
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x558a82bef98e - std::sys_common::backtrace::__rust_begin_short_backtrace::ha89b267f3dfed38b
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x558a82bedfe1 - std::rt::lang_start::{{closure}}::hec793373ba098d14
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:49:18
[INFO] [stderr]     19:     0x558a82df0c59 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h2aabc384aab89b7b
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x558a82df0c59 - std::panicking::try::do_call::hc5fcacb7a85fc7b1
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:401:40
[INFO] [stderr]     21:     0x558a82df0c59 - std::panicking::try::hb5d9603af3abbe3a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:365:19
[INFO] [stderr]     22:     0x558a82df0c59 - std::panic::catch_unwind::h98fe6ac3925e64b4
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panic.rs:434:14
[INFO] [stderr]     23:     0x558a82df0c59 - std::rt::lang_start_internal::h22ac7383c516f93e
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:34:21
[INFO] [stderr]     24:     0x558a82bedfc0 - std::rt::lang_start::h4fbf0e67f90124c1
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:48:5
[INFO] [stderr]     25:     0x558a82be4bdc - main
[INFO] [stderr]     26:     0x7f19f38220b3 - __libc_start_main
[INFO] [stderr]     27:     0x558a82bdcf0e - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "baa869bf51b4670eef89f39f16056f4b215d7807a0f3ac1f1463b912f7290249", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "baa869bf51b4670eef89f39f16056f4b215d7807a0f3ac1f1463b912f7290249", kill_on_drop: false }`
[INFO] [stdout] baa869bf51b4670eef89f39f16056f4b215d7807a0f3ac1f1463b912f7290249
