[INFO] cloning repository https://github.com/bow/gtetools
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bow/gtetools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbow%2Fgtetools", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbow%2Fgtetools'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f3deceb46e062ff5e4de4a4623da8ceecb31d3aa
[INFO] documenting bow/gtetools against beta-2021-08-01 for beta-1.55-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbow%2Fgtetools" "/workspace/builds/worker-8/source", kill_on_drop: false }`
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[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/bow/gtetools on toolchain beta-2021-08-01
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/bow/gtetools
[INFO] finished tweaking git repo https://github.com/bow/gtetools
[INFO] tweaked toml for git repo https://github.com/bow/gtetools written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate git repo https://github.com/bow/gtetools already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/bow/rust-bio.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded quick-error v1.2.0
[INFO] [stderr]   Downloaded num-rational v0.1.38
[INFO] [stderr]   Downloaded num-complex v0.1.38
[INFO] [stderr]   Downloaded nalgebra v0.10.1
[INFO] [stderr]   Downloaded num-bigint v0.1.39
[INFO] [stderr]   Downloaded itertools-num v0.1.1
[INFO] [stderr]   Downloaded csv v0.15.0
[INFO] [stderr]   Downloaded multimap v0.4.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 2c2d1d37eb7acdbbe2dd0414620c235132e5950d657359a8f743f9e7f62de3cc
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "2c2d1d37eb7acdbbe2dd0414620c235132e5950d657359a8f743f9e7f62de3cc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "2c2d1d37eb7acdbbe2dd0414620c235132e5950d657359a8f743f9e7f62de3cc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2c2d1d37eb7acdbbe2dd0414620c235132e5950d657359a8f743f9e7f62de3cc", kill_on_drop: false }`
[INFO] [stdout] 2c2d1d37eb7acdbbe2dd0414620c235132e5950d657359a8f743f9e7f62de3cc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 091503917f157b48bf1f3ab153bdbf891d30364f0e31132137859168ff465fea
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "091503917f157b48bf1f3ab153bdbf891d30364f0e31132137859168ff465fea", kill_on_drop: false }`
[INFO] [stderr]     Checking regex-syntax v0.4.1
[INFO] [stderr]     Checking either v1.1.0
[INFO] [stderr]     Checking quick-error v1.2.0
[INFO] [stderr]     Checking memchr v1.0.1
[INFO] [stderr]     Checking thread-id v3.1.0
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[INFO] [stderr]     Checking num-bigint v0.1.39
[INFO] [stderr]     Checking ordered-float v0.5.0
[INFO] [stderr]     Checking vec_map v0.8.0
[INFO] [stderr]     Checking aho-corasick v0.6.3
[INFO] [stderr]     Checking csv v0.15.0
[INFO] [stderr]     Checking itertools v0.6.0
[INFO] [stderr]     Checking thread_local v0.3.3
[INFO] [stderr]     Checking clap v2.24.2
[INFO] [stderr]     Checking num-rational v0.1.38
[INFO] [stderr]     Checking num v0.1.39
[INFO] [stderr]     Checking regex v0.2.2
[INFO] [stderr]     Checking nalgebra v0.10.1
[INFO] [stderr]     Checking bio v0.13.0 (https://github.com/bow/rust-bio.git?rev=00b5152#00b5152b)
[INFO] [stderr]     Checking gte v0.1.0 (/opt/rustwide/workdir/gte)
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]     --> gte/src/model.rs:1715:13
[INFO] [stdout]      |
[INFO] [stdout] 1715 |             (3 - (cast_cur_frame - cur_span) % 3)
[INFO] [stdout]      |             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: remove these parentheses
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]     --> gte/src/model.rs:926:1
[INFO] [stdout]      |
[INFO] [stdout] 926  | / quick_error! {
[INFO] [stdout] 927  | |     /// Errors that occur when building genes, transcripts, or exons.
[INFO] [stdout] 928  | |     #[derive(Debug)]
[INFO] [stdout] 929  | |     pub enum ModelError {
[INFO] [stdout] ...    |
[INFO] [stdout] 1011 | |     }
[INFO] [stdout] 1012 | | }
[INFO] [stdout]      | |_^
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(deprecated)]` on by default
[INFO] [stdout]      = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]     --> gte/src/model.rs:926:1
[INFO] [stdout]      |
[INFO] [stdout] 926  | / quick_error! {
[INFO] [stdout] 927  | |     /// Errors that occur when building genes, transcripts, or exons.
[INFO] [stdout] 928  | |     #[derive(Debug)]
[INFO] [stdout] 929  | |     pub enum ModelError {
[INFO] [stdout] ...    |
[INFO] [stdout] 1011 | |     }
[INFO] [stdout] 1012 | | }
[INFO] [stdout]      | |_^
[INFO] [stdout]      |
[INFO] [stdout]      = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]     --> gte/src/model.rs:926:1
[INFO] [stdout]      |
[INFO] [stdout] 926  | / quick_error! {
[INFO] [stdout] 927  | |     /// Errors that occur when building genes, transcripts, or exons.
[INFO] [stdout] 928  | |     #[derive(Debug)]
[INFO] [stdout] 929  | |     pub enum ModelError {
[INFO] [stdout] ...    |
[INFO] [stdout] 1011 | |     }
[INFO] [stdout] 1012 | | }
[INFO] [stdout]      | |_^
[INFO] [stdout]      |
[INFO] [stdout]      = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]     --> gte/src/model.rs:926:1
[INFO] [stdout]      |
[INFO] [stdout] 926  | / quick_error! {
[INFO] [stdout] 927  | |     /// Errors that occur when building genes, transcripts, or exons.
[INFO] [stdout] 928  | |     #[derive(Debug)]
[INFO] [stdout] 929  | |     pub enum ModelError {
[INFO] [stdout] ...    |
[INFO] [stdout] 1011 | |     }
[INFO] [stdout] 1012 | | }
[INFO] [stdout]      | |_^
[INFO] [stdout]      |
[INFO] [stdout]      = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_refflat.rs:27:1
[INFO] [stdout]    |
[INFO] [stdout] 27 | / quick_error! {
[INFO] [stdout] 28 | |     /// Errors that occur when reading or writing refFlat files.
[INFO] [stdout] 29 | |     #[derive(Debug)]
[INFO] [stdout] 30 | |     pub enum RefFlatError {
[INFO] [stdout] ...  |
[INFO] [stdout] 65 | |     }
[INFO] [stdout] 66 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_refflat.rs:27:1
[INFO] [stdout]    |
[INFO] [stdout] 27 | / quick_error! {
[INFO] [stdout] 28 | |     /// Errors that occur when reading or writing refFlat files.
[INFO] [stdout] 29 | |     #[derive(Debug)]
[INFO] [stdout] 30 | |     pub enum RefFlatError {
[INFO] [stdout] ...  |
[INFO] [stdout] 65 | |     }
[INFO] [stdout] 66 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_refflat.rs:27:1
[INFO] [stdout]    |
[INFO] [stdout] 27 | / quick_error! {
[INFO] [stdout] 28 | |     /// Errors that occur when reading or writing refFlat files.
[INFO] [stdout] 29 | |     #[derive(Debug)]
[INFO] [stdout] 30 | |     pub enum RefFlatError {
[INFO] [stdout] ...  |
[INFO] [stdout] 65 | |     }
[INFO] [stdout] 66 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:68:1
[INFO] [stdout]     |
[INFO] [stdout] 68  | / quick_error! {
[INFO] [stdout] 69  | |     /// Errors that occur when reading GFF file variants.
[INFO] [stdout] 70  | |     #[derive(Debug)]
[INFO] [stdout] 71  | |     pub enum GffError {
[INFO] [stdout] ...   |
[INFO] [stdout] 142 | |     }
[INFO] [stdout] 143 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:68:1
[INFO] [stdout]     |
[INFO] [stdout] 68  | / quick_error! {
[INFO] [stdout] 69  | |     /// Errors that occur when reading GFF file variants.
[INFO] [stdout] 70  | |     #[derive(Debug)]
[INFO] [stdout] 71  | |     pub enum GffError {
[INFO] [stdout] ...   |
[INFO] [stdout] 142 | |     }
[INFO] [stdout] 143 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:68:1
[INFO] [stdout]     |
[INFO] [stdout] 68  | / quick_error! {
[INFO] [stdout] 69  | |     /// Errors that occur when reading GFF file variants.
[INFO] [stdout] 70  | |     #[derive(Debug)]
[INFO] [stdout] 71  | |     pub enum GffError {
[INFO] [stdout] ...   |
[INFO] [stdout] 142 | |     }
[INFO] [stdout] 143 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:68:1
[INFO] [stdout]     |
[INFO] [stdout] 68  | / quick_error! {
[INFO] [stdout] 69  | |     /// Errors that occur when reading GFF file variants.
[INFO] [stdout] 70  | |     #[derive(Debug)]
[INFO] [stdout] 71  | |     pub enum GffError {
[INFO] [stdout] ...   |
[INFO] [stdout] 142 | |     }
[INFO] [stdout] 143 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:68:1
[INFO] [stdout]     |
[INFO] [stdout] 68  | / quick_error! {
[INFO] [stdout] 69  | |     /// Errors that occur when reading GFF file variants.
[INFO] [stdout] 70  | |     #[derive(Debug)]
[INFO] [stdout] 71  | |     pub enum GffError {
[INFO] [stdout] ...   |
[INFO] [stdout] 142 | |     }
[INFO] [stdout] 143 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:68:1
[INFO] [stdout]     |
[INFO] [stdout] 68  | / quick_error! {
[INFO] [stdout] 69  | |     /// Errors that occur when reading GFF file variants.
[INFO] [stdout] 70  | |     #[derive(Debug)]
[INFO] [stdout] 71  | |     pub enum GffError {
[INFO] [stdout] ...   |
[INFO] [stdout] 142 | |     }
[INFO] [stdout] 143 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `quick_error` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/model.rs:958:38
[INFO] [stdout]     |
[INFO] [stdout] 958 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/model.rs:964:38
[INFO] [stdout]     |
[INFO] [stdout] 964 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/model.rs:970:38
[INFO] [stdout]     |
[INFO] [stdout] 970 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/model.rs:978:38
[INFO] [stdout]     |
[INFO] [stdout] 978 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/model.rs:985:38
[INFO] [stdout]     |
[INFO] [stdout] 985 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/model.rs:991:38
[INFO] [stdout]     |
[INFO] [stdout] 991 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/model.rs:997:38
[INFO] [stdout]     |
[INFO] [stdout] 997 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]     --> gte/src/model.rs:1003:38
[INFO] [stdout]      |
[INFO] [stdout] 1003 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]      |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]     --> gte/src/model.rs:1009:38
[INFO] [stdout]      |
[INFO] [stdout] 1009 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]      |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_refflat.rs:36:38
[INFO] [stdout]    |
[INFO] [stdout] 36 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_refflat.rs:42:38
[INFO] [stdout]    |
[INFO] [stdout] 42 | ...                   self_.description(), gid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_refflat.rs:56:38
[INFO] [stdout]    |
[INFO] [stdout] 56 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_gff.rs:88:38
[INFO] [stdout]    |
[INFO] [stdout] 88 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_gff.rs:94:38
[INFO] [stdout]    |
[INFO] [stdout] 94 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:104:38
[INFO] [stdout]     |
[INFO] [stdout] 104 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:110:38
[INFO] [stdout]     |
[INFO] [stdout] 110 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:116:38
[INFO] [stdout]     |
[INFO] [stdout] 116 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:123:38
[INFO] [stdout]     |
[INFO] [stdout] 123 | ...                   self_.description(), tid.as_deref().unwrap_or(DEF_ID))
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/model.rs:936:48
[INFO] [stdout]     |
[INFO] [stdout] 936 |                     ref otherwise => otherwise.description(),
[INFO] [stdout]     |                                                ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/model.rs:942:29
[INFO] [stdout]     |
[INFO] [stdout] 942 |             description(err.description())
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_refflat.rs:54:29
[INFO] [stdout]    |
[INFO] [stdout] 54 |             description(err.description())
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/io_refflat.rs:61:29
[INFO] [stdout]    |
[INFO] [stdout] 61 |             description(err.description())
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:131:29
[INFO] [stdout]     |
[INFO] [stdout] 131 |             description(err.description())
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> gte/src/io_gff.rs:137:29
[INFO] [stdout]     |
[INFO] [stdout] 137 |             description(err.description())
[INFO] [stdout]     |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/lib.rs:50:29
[INFO] [stdout]    |
[INFO] [stdout] 50 |             description(err.description())
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/lib.rs:57:29
[INFO] [stdout]    |
[INFO] [stdout] 57 |             description(err.description())
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]   --> gte/src/lib.rs:64:29
[INFO] [stdout]    |
[INFO] [stdout] 64 |             description(err.description())
[INFO] [stdout]    |                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `utils::OptionDeref`
[INFO] [stdout]   --> gte/src/model.rs:14:5
[INFO] [stdout]    |
[INFO] [stdout] 14 | use utils::OptionDeref;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `OptionDeref`
[INFO] [stdout]   --> gte/src/io_refflat.rs:24:13
[INFO] [stdout]    |
[INFO] [stdout] 24 | use utils::{OptionDeref, update_seq_name};
[INFO] [stdout]    |             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `OptionDeref`
[INFO] [stdout]   --> gte/src/io_gff.rs:26:13
[INFO] [stdout]    |
[INFO] [stdout] 26 | use utils::{OptionDeref, update_seq_name};
[INFO] [stdout]    |             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> gte/src/model.rs:1650:9
[INFO] [stdout]      |
[INFO] [stdout] 1650 |     for mut exon in exons.iter_mut().rev() {
[INFO] [stdout]      |         ----^^^^
[INFO] [stdout]      |         |
[INFO] [stdout]      |         help: remove this `mut`
[INFO] [stdout]      |
[INFO] [stdout]      = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]     --> gte/src/model.rs:1685:9
[INFO] [stdout]      |
[INFO] [stdout] 1685 |     for mut exon in exons_miter {
[INFO] [stdout]      |         ----^^^^
[INFO] [stdout]      |         |
[INFO] [stdout]      |         help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error[E0515]: cannot return value referencing local variable `err`
[INFO] [stdout]    --> gte/src/model.rs:933:17
[INFO] [stdout]     |
[INFO] [stdout] 933 | /                 match err {
[INFO] [stdout] 934 | |                     &IntervalError::InvalidRange =>
[INFO] [stdout] 935 | |                         "interval start coordinate larger than its end coordinate",
[INFO] [stdout] 936 | |                     ref otherwise => otherwise.description(),
[INFO] [stdout]     | |                     ------------- `err` is borrowed here
[INFO] [stdout] 937 | |                 })
[INFO] [stdout]     | |_________________^ returns a value referencing data owned by the current function
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error; 46 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0515`.
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `gte` due to 2 previous errors; 46 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "091503917f157b48bf1f3ab153bdbf891d30364f0e31132137859168ff465fea", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "091503917f157b48bf1f3ab153bdbf891d30364f0e31132137859168ff465fea", kill_on_drop: false }`
[INFO] [stdout] 091503917f157b48bf1f3ab153bdbf891d30364f0e31132137859168ff465fea
