[INFO] fetching crate flann-sys 0.1.0...
[INFO] documenting flann-sys-0.1.0 against 1.54.0 for beta-1.55-rustdoc-1
[INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-9/source
[INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 1.54.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate flann-sys 0.1.0
[INFO] finished tweaking crates.io crate flann-sys 0.1.0
[INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.54.0" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] cbfeba29e938efea9de35e3ff34942d781e76b557878c3f2dbf7bb2a3de20e42
[INFO] running `Command { std: "docker" "start" "-a" "cbfeba29e938efea9de35e3ff34942d781e76b557878c3f2dbf7bb2a3de20e42", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "cbfeba29e938efea9de35e3ff34942d781e76b557878c3f2dbf7bb2a3de20e42", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cbfeba29e938efea9de35e3ff34942d781e76b557878c3f2dbf7bb2a3de20e42", kill_on_drop: false }`
[INFO] [stdout] cbfeba29e938efea9de35e3ff34942d781e76b557878c3f2dbf7bb2a3de20e42
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+1.54.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 6627e3638b19dff2f937da6c13d8f86f4e1397fba325d86889b42437db9eee6a
[INFO] running `Command { std: "docker" "start" "-a" "6627e3638b19dff2f937da6c13d8f86f4e1397fba325d86889b42437db9eee6a", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.98
[INFO] [stderr]    Compiling libloading v0.4.3
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling bindgen v0.32.3
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling clang-sys v0.21.2
[INFO] [stderr]    Compiling proc-macro2 v0.2.3
[INFO] [stderr]    Compiling env_logger v0.4.3
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling quote v0.4.2
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling flann-sys v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-b79cdc927d0a83f4/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:rustc-link-lib=gomp
[INFO] [stderr]   cargo:rustc-link-lib=stdc++
[INFO] [stderr]   running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-b44f2b262e5d1e8d/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug"
[INFO] [stderr]   -- The C compiler identification is GNU 9.3.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 9.3.0
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Found PythonInterp: /usr/bin/python (found version "2.7.18") 
[INFO] [stderr]   -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "")
[INFO] [stderr]   -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) 
[INFO] [stderr]   -- Found OpenMP_C: -fopenmp (found version "4.5") 
[INFO] [stderr]   -- Found OpenMP_CXX: -fopenmp (found version "4.5") 
[INFO] [stderr]   -- Found OpenMP: TRUE (found version "4.5")  
[INFO] [stderr]   -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-b44f2b262e5d1e8d/out
[INFO] [stderr]   -- Build type: Debug
[INFO] [stderr]   -- Building C bindings: ON
[INFO] [stderr]   -- Building examples: OFF
[INFO] [stderr]   -- Building tests: OFF
[INFO] [stderr]   -- Building documentation: OFF
[INFO] [stderr]   -- Building python bindings: OFF
[INFO] [stderr]   -- Building matlab bindings: OFF
[INFO] [stderr]   -- Building CUDA library: OFF
[INFO] [stderr]   -- Using OpenMP support: ON
[INFO] [stderr]   -- Using MPI support: OFF
[INFO] [stderr]   -- Configuring incomplete, errors occurred!
[INFO] [stderr]   See also "/opt/rustwide/target/debug/build/flann-sys-b44f2b262e5d1e8d/out/build/CMakeFiles/CMakeOutput.log".
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   CMake Warning at CMakeLists.txt:78 (message):
[INFO] [stderr]     hdf5 library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Warning at CMakeLists.txt:117 (message):
[INFO] [stderr]     gtest library not found, some tests will not be run
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp
[INFO] [stderr]   CMake Error: : System Error: Read-only file system
[INFO] [stderr]   CMake Error at src/cpp/CMakeLists.txt:5 (configure_file):
[INFO] [stderr]     configure_file Problem configuring file
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at '
[INFO] [stderr]   command did not execute successfully, got: exit status: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x555b6e0518f0 - std::backtrace_rs::backtrace::libunwind::trace::h34055254b57d8e79
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x555b6e0518f0 - std::backtrace_rs::backtrace::trace_unsynchronized::h8f1e3fbd9afff6ec
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x555b6e0518f0 - std::sys_common::backtrace::_print_fmt::h3a99a796b770c360
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x555b6e0518f0 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h32d1f94a80615d18
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x555b6e0775fc - core::fmt::write::h306731c068f7162c
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/fmt/mod.rs:1110:17
[INFO] [stderr]      5:     0x555b6e04e325 - std::io::Write::write_fmt::hd2fa90334eee2a21
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/io/mod.rs:1588:15
[INFO] [stderr]      6:     0x555b6e05405b - std::sys_common::backtrace::_print::h5abaa2601a852287
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x555b6e05405b - std::sys_common::backtrace::print::h8d81445442bb638f
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x555b6e05405b - std::panicking::default_hook::{{closure}}::hcfe804496a9fa747
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x555b6e053b31 - std::panicking::default_hook::hbea8e3ccf2ba8901
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x555b6e054724 - std::panicking::rust_panic_with_hook::h7ee9e1a2d0f8975a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:622:17
[INFO] [stderr]     11:     0x555b6e054207 - std::panicking::begin_panic_handler::{{closure}}::h8ab3b4491718b2c7
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:519:13
[INFO] [stderr]     12:     0x555b6e051dec - std::sys_common::backtrace::__rust_end_short_backtrace::hd489062ffa586a9f
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x555b6e054169 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:515:5
[INFO] [stderr]     14:     0x555b6db65beb - std::panicking::begin_panic_fmt::h5479575e112541f8
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:457:5
[INFO] [stderr]     15:     0x555b6db71683 - cmake::fail::ha1cc8d11909fbc7e
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5
[INFO] [stderr]     16:     0x555b6db71091 - cmake::run::hdc59bf284b822c8e
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9
[INFO] [stderr]     17:     0x555b6db6da15 - cmake::Config::build::hf6738867fda55e0d
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:707:13
[INFO] [stderr]     18:     0x555b6db689d5 - build_script_build::main::h0d49bc4bc6717df3
[INFO] [stderr]                                  at /opt/rustwide/workdir/build.rs:30:19
[INFO] [stderr]     19:     0x555b6db6776b - core::ops::function::FnOnce::call_once::h803cd5b081732393
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     20:     0x555b6db67f2e - std::sys_common::backtrace::__rust_begin_short_backtrace::h663aec2ae594975a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     21:     0x555b6db67c61 - std::rt::lang_start::{{closure}}::h02e6a0693a566b13
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:49:18
[INFO] [stderr]     22:     0x555b6e054c29 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h2aabc384aab89b7b
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     23:     0x555b6e054c29 - std::panicking::try::do_call::hc5fcacb7a85fc7b1
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:401:40
[INFO] [stderr]     24:     0x555b6e054c29 - std::panicking::try::hb5d9603af3abbe3a
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panicking.rs:365:19
[INFO] [stderr]     25:     0x555b6e054c29 - std::panic::catch_unwind::h98fe6ac3925e64b4
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/panic.rs:434:14
[INFO] [stderr]     26:     0x555b6e054c29 - std::rt::lang_start_internal::h22ac7383c516f93e
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:34:21
[INFO] [stderr]     27:     0x555b6db67c40 - std::rt::lang_start::h71b2fed747a23820
[INFO] [stderr]                                  at /rustc/a178d0322ce20e33eac124758e837cbd80a6f633/library/std/src/rt.rs:48:5
[INFO] [stderr]     28:     0x555b6db68dec - main
[INFO] [stderr]     29:     0x7fa0bf4a20b3 - __libc_start_main
[INFO] [stderr]     30:     0x555b6db6706e - _start
[INFO] [stderr]     31:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "6627e3638b19dff2f937da6c13d8f86f4e1397fba325d86889b42437db9eee6a", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6627e3638b19dff2f937da6c13d8f86f4e1397fba325d86889b42437db9eee6a", kill_on_drop: false }`
[INFO] [stdout] 6627e3638b19dff2f937da6c13d8f86f4e1397fba325d86889b42437db9eee6a
