[INFO] fetching crate noodles-sam 0.2.0...
[INFO] testing noodles-sam-0.2.0 against beta-2021-08-01 for beta-1.55-1
[INFO] extracting crate noodles-sam 0.2.0 into /workspace/builds/worker-68/source
[INFO] validating manifest of crates.io crate noodles-sam 0.2.0 on toolchain beta-2021-08-01
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking crates.io crate noodles-sam 0.2.0
[INFO] finished tweaking crates.io crate noodles-sam 0.2.0
[INFO] tweaked toml for crates.io crate noodles-sam 0.2.0 written to /workspace/builds/worker-68/source/Cargo.toml
[INFO] crate crates.io crate noodles-sam 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-68/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-68/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] d2f1542c75b24a6e12c99808f8c2caf86e018e34ae6c307f4ffa795f060db6cb
[INFO] running `Command { std: "docker" "start" "-a" "d2f1542c75b24a6e12c99808f8c2caf86e018e34ae6c307f4ffa795f060db6cb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d2f1542c75b24a6e12c99808f8c2caf86e018e34ae6c307f4ffa795f060db6cb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d2f1542c75b24a6e12c99808f8c2caf86e018e34ae6c307f4ffa795f060db6cb", kill_on_drop: false }`
[INFO] [stdout] d2f1542c75b24a6e12c99808f8c2caf86e018e34ae6c307f4ffa795f060db6cb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-68/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-68/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] c80d44731430ff460603b52adee13f5900d4bc4263524e8b4236884d6fd8cfd2
[INFO] running `Command { std: "docker" "start" "-a" "c80d44731430ff460603b52adee13f5900d4bc4263524e8b4236884d6fd8cfd2", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling crc32fast v1.2.1
[INFO] [stderr]    Compiling miniz_oxide v0.4.4
[INFO] [stderr]    Compiling indexmap v1.7.0
[INFO] [stderr]    Compiling flate2 v1.0.20
[INFO] [stderr]    Compiling noodles-bgzf v0.2.0
[INFO] [stderr]    Compiling noodles-sam v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 7.07s
[INFO] running `Command { std: "docker" "inspect" "c80d44731430ff460603b52adee13f5900d4bc4263524e8b4236884d6fd8cfd2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c80d44731430ff460603b52adee13f5900d4bc4263524e8b4236884d6fd8cfd2", kill_on_drop: false }`
[INFO] [stdout] c80d44731430ff460603b52adee13f5900d4bc4263524e8b4236884d6fd8cfd2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-68/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-68/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 7880b7571fa6abe69cf3632d04f7b169662606d73515ea624037a19c7267e4cd
[INFO] running `Command { std: "docker" "start" "-a" "7880b7571fa6abe69cf3632d04f7b169662606d73515ea624037a19c7267e4cd", kill_on_drop: false }`
[INFO] [stderr]    Compiling noodles-sam v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 5.78s
[INFO] running `Command { std: "docker" "inspect" "7880b7571fa6abe69cf3632d04f7b169662606d73515ea624037a19c7267e4cd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7880b7571fa6abe69cf3632d04f7b169662606d73515ea624037a19c7267e4cd", kill_on_drop: false }`
[INFO] [stdout] 7880b7571fa6abe69cf3632d04f7b169662606d73515ea624037a19c7267e4cd
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-68/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-68/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] fe1fd8c185baf5ebd10a0d0108a8ff5e6518f06e050fae47d355effbe8c0eb54
[INFO] running `Command { std: "docker" "start" "-a" "fe1fd8c185baf5ebd10a0d0108a8ff5e6518f06e050fae47d355effbe8c0eb54", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.07s
[INFO] [stderr]      Running unittests (/opt/rustwide/target/debug/deps/noodles_sam-1dd562f0ceb030b8)
[INFO] [stdout] 
[INFO] [stdout] running 127 tests
[INFO] [stdout] test header::builder::tests::test_default ... ok
[INFO] [stdout] test header::header::group_order::tests::test_fmt ... ok
[INFO] [stdout] test header::header::group_order::tests::test_default ... ok
[INFO] [stdout] test header::header::group_order::tests::test_from_str ... ok
[INFO] [stdout] test header::header::sort_order::tests::test_fmt ... ok
[INFO] [stdout] test header::header::sort_order::tests::test_default ... ok
[INFO] [stdout] test header::builder::tests::test_build ... ok
[INFO] [stdout] test header::header::sort_order::tests::test_from_str ... ok
[INFO] [stdout] test header::header::subsort_order::tests::test_fmt ... ok
[INFO] [stdout] test header::header::subsort_order::tests::test_from_str ... ok
[INFO] [stdout] test header::header::tag::tests::test_fmt ... ok
[INFO] [stdout] test header::header::tag::tests::test_from_str ... ok
[INFO] [stdout] test header::header::tests::test_default ... ok
[INFO] [stdout] test header::header::tests::test_fmt ... ok
[INFO] [stdout] test header::header::tests::test_try_from_record_for_header_with_invalid_record ... ok
[INFO] [stdout] test header::header::tests::test_try_from_record_for_header_with_no_version ... ok
[INFO] [stdout] test header::header::version::tests::test_default ... ok
[INFO] [stdout] test header::header::version::tests::test_fmt ... ok
[INFO] [stdout] test header::header::version::tests::test_from_str ... ok
[INFO] [stdout] test header::program::tag::tests::test_fmt ... ok
[INFO] [stdout] test header::program::tag::tests::test_from_str ... ok
[INFO] [stdout] test header::program::tests::test_fmt ... ok
[INFO] [stdout] test header::program::tests::test_try_from_record_for_program_with_invalid_record ... ok
[INFO] [stdout] test header::read_group::platform::tests::test_fmt ... ok
[INFO] [stdout] test header::program::tests::test_try_from_record_for_program_with_no_id ... ok
[INFO] [stdout] test header::read_group::platform::tests::test_from_str ... ok
[INFO] [stdout] test header::read_group::tag::tests::test_fmt ... ok
[INFO] [stdout] test header::read_group::tag::tests::test_from_str ... ok
[INFO] [stdout] test header::read_group::tests::test_fmt ... ok
[INFO] [stdout] test header::read_group::tests::test_try_from_record_for_read_group_with_invalid_platform ... ok
[INFO] [stdout] test header::read_group::tests::test_try_from_record_for_read_group_with_invalid_record ... ok
[INFO] [stdout] test header::read_group::tests::test_try_from_record_for_read_group_with_invalid_predicted_median_insert_size ... ok
[INFO] [stdout] test header::record::kind::tests::test_from_str ... ok
[INFO] [stdout] test header::read_group::tests::test_try_from_record_for_read_group_with_no_id ... ok
[INFO] [stdout] test header::record::tests::test_from_str ... ok
[INFO] [stdout] test header::reference_sequence::alternative_locus::tests::test_fmt ... ok
[INFO] [stdout] test header::record::value::tests::test_try_from_iter ... ok
[INFO] [stdout] test header::reference_sequence::alternative_names::tests::test_fmt ... ok
[INFO] [stdout] test header::reference_sequence::alternative_locus::tests::test_from_str ... ok
[INFO] [stdout] test header::reference_sequence::alternative_names::tests::test_from_str ... ok
[INFO] [stdout] test header::reference_sequence::builder::tests::test_build ... ok
[INFO] [stdout] test header::reference_sequence::md5_checksum::tests::test_fmt ... ok
[INFO] [stdout] test header::reference_sequence::md5_checksum::tests::test_from_md5_checksum_for_u8_array ... ok
[INFO] [stdout] test header::reference_sequence::md5_checksum::tests::test_from_u8_array_for_md5_checksum ... ok
[INFO] [stdout] test header::reference_sequence::md5_checksum::tests::test_parse ... ok
[INFO] [stdout] test header::reference_sequence::molecule_topology::tests::test_default ... ok
[INFO] [stdout] test header::reference_sequence::molecule_topology::tests::test_fmt ... ok
[INFO] [stdout] test header::reference_sequence::molecule_topology::tests::test_from_str ... ok
[INFO] [stdout] test header::reference_sequence::tag::tests::test_fmt ... ok
[INFO] [stdout] test header::reference_sequence::tag::tests::test_from_str ... ok
[INFO] [stdout] test header::reference_sequence::tests::test_fmt ... ok
[INFO] [stdout] test header::reference_sequence::tests::test_new ... ok
[INFO] [stdout] test header::reference_sequence::tests::test_try_from_record_for_reference_sequence_with_invalid_length ... ok
[INFO] [stdout] test header::reference_sequence::tests::test_try_from_record_for_reference_sequence_with_invalid_name ... ok
[INFO] [stdout] test header::reference_sequence::tests::test_try_from_record_for_reference_sequence_with_invalid_record ... ok
[INFO] [stdout] test header::reference_sequence::tests::test_try_from_record_for_reference_sequence_with_missing_length ... ok
[INFO] [stdout] test header::reference_sequence::tests::test_try_from_record_for_reference_sequence_with_missing_name ... ok
[INFO] [stdout] test header::reference_sequence::tests::test_try_from_record_for_reference_sequence_with_missing_name_and_length ... ok
[INFO] [stdout] test header::tests::test_fmt ... ok
[INFO] [stdout] test header::tests::test_from_str_with_duplicate_program_ids ... ok
[INFO] [stdout] test header::tests::test_from_str_with_duplicate_read_group_ids ... ok
[INFO] [stdout] test header::tests::test_from_str ... ok
[INFO] [stdout] test reader::tests::test_read_header_with_multiple_buffer_fills ... ok
[INFO] [stdout] test header::tests::test_from_str_with_duplicate_reference_sequence_names ... ok
[INFO] [stdout] test header::tests::test_from_str_with_multiple_hd ... ok
[INFO] [stdout] test reader::tests::test_read_header_with_no_header ... ok
[INFO] [stdout] test header::tests::test_from_str_with_empty_input ... ok
[INFO] [stdout] test header::tests::test_from_str_without_hd ... ok
[INFO] [stdout] test reader::tests::test_read_header_with_no_records ... ok
[INFO] [stdout] test record::builder::tests::test_build_with_quality_scores_length_mismatch ... ok
[INFO] [stdout] test record::builder::tests::test_build ... ok
[INFO] [stdout] test record::builder::tests::test_default ... ok
[INFO] [stdout] test record::cigar::op::kind::tests::test_fmt ... ok
[INFO] [stdout] test record::cigar::op::kind::tests::test_from_kind_for_char ... ok
[INFO] [stdout] test record::cigar::op::kind::tests::test_from_str ... ok
[INFO] [stdout] test record::cigar::op::tests::test_from_str ... ok
[INFO] [stdout] test record::cigar::op::tests::test_fmt ... ok
[INFO] [stdout] test record::cigar::tests::test_fmt ... ok
[INFO] [stdout] test record::cigar::tests::test_fmt_when_cigar_has_no_ops ... ok
[INFO] [stdout] test record::cigar::tests::test_from_str ... ok
[INFO] [stdout] test record::cigar::tests::test_is_empty ... ok
[INFO] [stdout] test record::data::field::tag::tests::test_fmt ... ok
[INFO] [stdout] test record::data::field::tests::test_fmt ... ok
[INFO] [stdout] test record::data::field::tag::tests::test_from_str ... ok
[INFO] [stdout] test record::data::field::value::subtype::tests::test_fmt ... ok
[INFO] [stdout] test record::data::field::value::subtype::tests::test_from_str ... ok
[INFO] [stdout] test record::data::field::value::subtype::tests::test_from_subtype_for_char ... ok
[INFO] [stdout] test record::data::field::value::tests::test_fmt ... ok
[INFO] [stdout] test record::data::field::value::tests::test_subtype ... ok
[INFO] [stdout] test record::data::field::value::tests::test_from_str ... ok
[INFO] [stdout] test record::data::field::value::tests::test_ty ... ok
[INFO] [stdout] test record::data::field::value::ty::tests::test_fmt ... ok
[INFO] [stdout] test record::data::field::value::ty::tests::test_from_str ... ok
[INFO] [stdout] test record::data::field::value::ty::tests::test_from_type_for_char ... ok
[INFO] [stdout] test record::data::tests::test_fmt ... ok
[INFO] [stdout] test record::data::tests::test_from_str ... ok
[INFO] [stdout] test record::field::tests::test_fmt ... ok
[INFO] [stdout] test record::flags::tests::test_contains ... ok
[INFO] [stdout] test record::flags::tests::test_default ... ok
[INFO] [stdout] test record::flags::tests::test_from_flags_for_u16 ... ok
[INFO] [stdout] test record::flags::tests::test_from_u16_for_flags ... ok
[INFO] [stdout] test record::mapping_quality::tests::test_from_mapping_quality_for_u8 ... ok
[INFO] [stdout] test record::mapping_quality::tests::test_from_u8_for_mapping_quality ... ok
[INFO] [stdout] test record::position::tests::test_from_position_for_i32 ... ok
[INFO] [stdout] test record::position::tests::test_from_str ... ok
[INFO] [stdout] test record::position::tests::test_try_from_i32_for_position ... ok
[INFO] [stdout] test record::quality_scores::score::tests::test_from_score_for_char ... ok
[INFO] [stdout] test record::quality_scores::score::tests::test_from_score_for_u8 ... ok
[INFO] [stdout] test record::quality_scores::score::tests::test_try_from_char_for_score ... ok
[INFO] [stdout] test record::quality_scores::score::tests::test_try_from_u8_for_score ... ok
[INFO] [stdout] test record::quality_scores::tests::test_fmt ... ok
[INFO] [stdout] test record::quality_scores::tests::test_from_str ... ok
[INFO] [stdout] test record::quality_scores::tests::test_is_empty ... ok
[INFO] [stdout] test record::quality_scores::tests::test_len ... ok
[INFO] [stdout] test record::read_name::tests::test_fmt ... ok
[INFO] [stdout] test record::read_name::tests::test_from_str ... ok
[INFO] [stdout] test record::reference_sequence_name::tests::test_fmt ... ok
[INFO] [stdout] test record::reference_sequence_name::tests::test_from_str ... ok
[INFO] [stdout] test record::sequence::base::tests::test_try_from_char_for_base ... ok
[INFO] [stdout] test record::sequence::tests::test_fmt ... ok
[INFO] [stdout] test record::sequence::tests::test_from_str ... ok
[INFO] [stdout] test record::tests::test_fmt ... ok
[INFO] [stdout] test record::tests::test_fmt_with_data ... ok
[INFO] [stdout] test record::tests::test_from_str_with_invalid_position ... ok
[INFO] [stdout] test record::tests::test_from_str_with_sequence_length_mismatch ... ok
[INFO] [stdout] test writer::tests::test_write_record_with_data ... ok
[INFO] [stdout] test record::tests::test_from_str_with_quality_scores_length_mismatch ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 127 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests noodles-sam
[INFO] [stdout] 
[INFO] [stdout] running 215 tests
[INFO] [stderr] error: test failed, to rerun pass '--doc'
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `rustdoc --edition=2018 --crate-type lib --crate-name noodles_sam --test /opt/rustwide/workdir/src/lib.rs -L dependency=/opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern bitflags=/opt/rustwide/target/debug/deps/libbitflags-e09638bf9aca31b4.rlib --extern indexmap=/opt/rustwide/target/debug/deps/libindexmap-aaa7679905b2afd3.rlib --extern noodles_bgzf=/opt/rustwide/target/debug/deps/libnoodles_bgzf-26de90bd51917b02.rlib --extern noodles_sam=/opt/rustwide/target/debug/deps/libnoodles_sam-c4e62bf4affc985e.rlib -C embed-bitcode=no --error-format human` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "fe1fd8c185baf5ebd10a0d0108a8ff5e6518f06e050fae47d355effbe8c0eb54", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fe1fd8c185baf5ebd10a0d0108a8ff5e6518f06e050fae47d355effbe8c0eb54", kill_on_drop: false }`
[INFO] [stdout] fe1fd8c185baf5ebd10a0d0108a8ff5e6518f06e050fae47d355effbe8c0eb54
