[INFO] fetching crate libprosic 0.7.3...
[INFO] testing libprosic-0.7.3 against beta-2021-08-01 for beta-1.55-1
[INFO] extracting crate libprosic 0.7.3 into /workspace/builds/worker-52/source
[INFO] validating manifest of crates.io crate libprosic 0.7.3 on toolchain beta-2021-08-01
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[INFO] started tweaking crates.io crate libprosic 0.7.3
[INFO] finished tweaking crates.io crate libprosic 0.7.3
[INFO] tweaked toml for crates.io crate libprosic 0.7.3 written to /workspace/builds/worker-52/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
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[INFO] [stderr]    Compiling libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 02s
[INFO] running `Command { std: "docker" "inspect" "8fee37e1bb2a8f96e8da77b5e3eba3852e30543744d735bbfac5b572eb9c3dbb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8fee37e1bb2a8f96e8da77b5e3eba3852e30543744d735bbfac5b572eb9c3dbb", kill_on_drop: false }`
[INFO] [stdout] 8fee37e1bb2a8f96e8da77b5e3eba3852e30543744d735bbfac5b572eb9c3dbb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-52/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 33b547731cb56cc2f337cfee73cf9ac85f5d31c5c64fb5a435680cd326bf01e2
[INFO] running `Command { std: "docker" "start" "-a" "33b547731cb56cc2f337cfee73cf9ac85f5d31c5c64fb5a435680cd326bf01e2", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling winapi-build v0.1.1
[INFO] [stderr]    Compiling winapi v0.2.8
[INFO] [stderr]    Compiling version_check v0.1.5
[INFO] [stderr]    Compiling httparse v1.4.1
[INFO] [stderr]    Compiling utf8-ranges v0.1.3
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling regex-syntax v0.3.9
[INFO] [stderr]    Compiling typeable v0.1.2
[INFO] [stderr]    Compiling language-tags v0.2.2
[INFO] [stderr]    Compiling traitobject v0.1.0
[INFO] [stderr]    Compiling miniz-sys v0.1.12
[INFO] [stderr]    Compiling memchr v0.1.11
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling mime v0.2.6
[INFO] [stderr]    Compiling fern v0.4.4
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 33 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling aho-corasick v0.5.3
[INFO] [stderr]    Compiling base64 v0.9.3
[INFO] [stderr]    Compiling kernel32-sys v0.2.2
[INFO] [stderr]    Compiling unicase v1.4.2
[INFO] [stderr]    Compiling thread-id v2.0.0
[INFO] [stderr]    Compiling thread_local v0.2.7
[INFO] [stderr]    Compiling flate2 v0.2.20
[INFO] [stderr]    Compiling hyper v0.10.16
[INFO] [stderr]    Compiling regex v0.1.80
[INFO] [stderr]    Compiling env_logger v0.3.5
[INFO] [stderr]    Compiling libprosic v0.7.3 (/opt/rustwide/workdir)
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/call/pairwise.rs:55:62
[INFO] [stdout]    |
[INFO] [stdout] 55 | ) -> Result<Vec<Option<model::PairPileup<'a, A, B, P>>>, Box<Error>>
[INFO] [stdout]    |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:62:20
[INFO] [stdout]    |
[INFO] [stdout] 62 |     let variants = try!(utils::collect_variants(
[INFO] [stdout]    |                    ^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:70:21
[INFO] [stdout]    |
[INFO] [stdout] 70 |     let chrom_seq = try!(reference_buffer.seq(&chrom));
[INFO] [stdout]    |                     ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/call/pairwise.rs:75:18
[INFO] [stdout]    |
[INFO] [stdout] 75 |             Some(try!(joint_model.pileup(
[INFO] [stdout]    |                  ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/call/pairwise.rs:116:21
[INFO] [stdout]     |
[INFO] [stdout] 116 | ) -> Result<(), Box<Error>>
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]    --> src/call/pairwise.rs:159:26
[INFO] [stdout]     |
[INFO] [stdout] 159 |         let mut writer = try!(csv::WriterBuilder::new()
[INFO] [stdout]     |                          ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/alignment_properties.rs:40:68
[INFO] [stdout]    |
[INFO] [stdout] 40 |     pub fn estimate<R: bam::Read>(bam: &mut R) -> Result<Self, Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/estimation/alignment_properties.rs:142:33
[INFO] [stdout]     |
[INFO] [stdout] 142 |     ) -> Result<InsertSize, Box<Error>> {
[INFO] [stdout]     |                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/estimation/fdr/ev.rs:35:21
[INFO] [stdout]    |
[INFO] [stdout] 35 | ) -> Result<(), Box<Error>>
[INFO] [stdout]    |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:52:89
[INFO] [stdout]    |
[INFO] [stdout] 52 | pub fn estimate_insert_size(left: &bam::Record, right: &bam::Record) -> Result<u32, Box<Error>> {
[INFO] [stdout]    |                                                                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/fragments.rs:56:68
[INFO] [stdout]    |
[INFO] [stdout] 56 |     let aln = |rec: &bam::Record, cigar| -> Result<(u32, u32), Box<Error>> {
[INFO] [stdout]    |                                                                    ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/fragments.rs:120:41
[INFO] [stdout]     |
[INFO] [stdout] 120 |     ) -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:30:49
[INFO] [stdout]    |
[INFO] [stdout] 30 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>>;
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/evidence/reads.rs:56:49
[INFO] [stdout]    |
[INFO] [stdout] 56 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]    |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:101:49
[INFO] [stdout]     |
[INFO] [stdout] 101 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/evidence/reads.rs:169:49
[INFO] [stdout]     |
[INFO] [stdout] 169 |     ) -> Result<Option<(LogProb, LogProb)>, Box<Error>> {
[INFO] [stdout]     |                                                 ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/model/sample.rs:68:82
[INFO] [stdout]    |
[INFO] [stdout] 68 |     pub fn fill(&mut self, chrom: &[u8], start: u32, end: u32) -> Result<(), Box<Error>> {
[INFO] [stdout]    |                                                                                  ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated macro `try`: use the `?` operator instead
[INFO] [stdout]   --> src/model/sample.rs:76:17
[INFO] [stdout]    |
[INFO] [stdout] 76 |                 try!(self.reader.fetch(tid, window_start, end));
[INFO] [stdout]    |                 ^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:220:39
[INFO] [stdout]     |
[INFO] [stdout] 220 |     ) -> Result<Vec<Observation>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:362:42
[INFO] [stdout]     |
[INFO] [stdout] 362 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:363:34
[INFO] [stdout]     |
[INFO] [stdout] 363 |         let mut evidence: RefMut<evidence::reads::AbstractReadEvidence> = match variant {
[INFO] [stdout]     |                                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: use `dyn`: `dyn evidence::reads::AbstractReadEvidence`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:409:42
[INFO] [stdout]     |
[INFO] [stdout] 409 |     ) -> Result<Option<Observation>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/sample.rs:412:44
[INFO] [stdout]     |
[INFO] [stdout] 412 |          -> Result<(LogProb, LogProb), Box<Error>> {
[INFO] [stdout]     |                                            ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:275:41
[INFO] [stdout]     |
[INFO] [stdout] 275 |     ) -> Result<SinglePileup<A, P>, Box<Error>> {
[INFO] [stdout]     |                                         ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/model/mod.rs:416:42
[INFO] [stdout]     |
[INFO] [stdout] 416 |     ) -> Result<PairPileup<A, B, P>, Box<Error>> {
[INFO] [stdout]     |                                          ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]   --> src/utils.rs:27:46
[INFO] [stdout]    |
[INFO] [stdout] 27 | ) -> Result<Vec<Option<model::Variant>>, Box<Error>> {
[INFO] [stdout]    |                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]    |
[INFO] [stdout]    = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]    = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:204:62
[INFO] [stdout]     |
[INFO] [stdout] 204 |     pub fn seq(&mut self, chrom: &[u8]) -> Result<&[u8], Box<Error>> {
[INFO] [stdout]     |                                                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:232:39
[INFO] [stdout]     |
[INFO] [stdout] 232 | ) -> Result<Vec<Option<LogProb>>, Box<Error>> {
[INFO] [stdout]     |                                       ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:276:35
[INFO] [stdout]     |
[INFO] [stdout] 276 | ) -> Result<Vec<NotNan<f64>>, Box<Error>> {
[INFO] [stdout]     |                                   ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:317:21
[INFO] [stdout]     |
[INFO] [stdout] 317 | ) -> Result<(), Box<Error>> {
[INFO] [stdout]     |                     ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/utils.rs:367:30
[INFO] [stdout]     |
[INFO] [stdout] 367 |     ) -> Result<Overlap, Box<Error>> {
[INFO] [stdout]     |                              ^^^^^ help: use `dyn`: `dyn Error`
[INFO] [stdout]     |
[INFO] [stdout]     = warning: this is accepted in the current edition (Rust 2015) but is a hard error in Rust 2021!
[INFO] [stdout]     = note: for more information, see issue #80165 <https://github.com/rust-lang/rust/issues/80165>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]    --> src/model/evidence/reads.rs:335:1
[INFO] [stdout]     |
[INFO] [stdout] 335 | / lazy_static! {
[INFO] [stdout] 336 | |     static ref PROB_CONFUSION: LogProb = LogProb::from(Prob(0.3333));
[INFO] [stdout] 337 | | }
[INFO] [stdout]     | |_^
[INFO] [stdout]     |
[INFO] [stdout]     = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated constant `std::sync::ONCE_INIT`: the `new` function is now preferred
[INFO] [stdout]   --> src/model/priors/single_cell_bulk.rs:26:1
[INFO] [stdout]    |
[INFO] [stdout] 26 | / cached! {
[INFO] [stdout] 27 | |     AMPLIF_CACHE: UnboundCache<(AlleleFreq, usize, usize), LogProb> = UnboundCache::new();
[INFO] [stdout] 28 | |     // Lodato et al. 2015, Science, Supplementary Information, pages 8f and Fig. S5 (A, C, E)
[INFO] [stdout] 29 | |     // TODO: allow for non-default Lodato model parameters, e.g. learned from the data at hand
[INFO] [stdout] ...  |
[INFO] [stdout] 96 | |     }
[INFO] [stdout] 97 | | }
[INFO] [stdout]    | |_^
[INFO] [stdout]    |
[INFO] [stdout]    = note: this warning originates in the macro `__lazy_static_create` (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this method call resolves to `<&[T; N] as IntoIterator>::into_iter` (due to backwards compatibility), but will resolve to <[T; N] as IntoIterator>::into_iter in Rust 2021.
[INFO] [stdout]    --> src/model/sample.rs:612:79
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.into_iter()) {
[INFO] [stdout]     |                                                                               ^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(array_into_iter)]` on by default
[INFO] [stdout]     = warning: this changes meaning in Rust 2021
[INFO] [stdout]     = note: for more information, see issue #66145 <https://github.com/rust-lang/rust/issues/66145>
[INFO] [stdout] help: use `.iter()` instead of `.into_iter()` to avoid ambiguity
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(true_alt_probs.iter()) {
[INFO] [stdout]     |                                                                               ^^^^
[INFO] [stdout] help: or use `IntoIterator::into_iter(..)` instead of `.into_iter()` to explicitly iterate by value
[INFO] [stdout]     |
[INFO] [stdout] 612 |         for (record, true_alt_prob) in records.into_iter().zip(IntoIterator::into_iter(true_alt_probs)) {
[INFO] [stdout]     |                                                                ^^^^^^^^^^^^^^^^^^^^^^^^              ^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note: "cc" "-m64" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.0.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.1.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.10.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.11.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.12.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.13.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.14.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.15.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.2.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.3.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.4.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.5.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.6.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.7.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.8.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.libprosic.5160840e-cgu.9.rcgu.o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa.4tkx161n1ihghz0u.rcgu.o" "-Wl,--as-needed" "-L" "/opt/rustwide/target/debug/deps" "-L" "/opt/rustwide/target/debug/build/miniz-sys-4619d2ad5751b19e/out" "-L" "/opt/rustwide/target/debug/build/rust-htslib-cdc0c3807c6b851e/out" "-L" "/opt/rustwide/target/debug/build/bzip2-sys-74243a2bd4e50ace/out/lib" "-L" "/usr/lib/x86_64-linux-gnu" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-Wl,-Bstatic" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libtest-6e9019ff2cdb2237.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgetopts-e9cc0b5f091b140c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunicode_width-762dfa4479f14aad.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_std-2a5ac1cc0b21909c.rlib" "/opt/rustwide/target/debug/deps/libenv_logger-32df8592f4e3bb64.rlib" "/opt/rustwide/target/debug/deps/libregex-b53210b3c968af61.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-00dd5dd0276011cb.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-ae4f23d3afb51b1c.rlib" "/opt/rustwide/target/debug/deps/libthread_local-d12c2649fc4eec99.rlib" "/opt/rustwide/target/debug/deps/libthread_id-812ae4e079262018.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-355147f961a0af61.rlib" "/opt/rustwide/target/debug/deps/libmemchr-1716e49b58537fbd.rlib" "/opt/rustwide/target/debug/deps/libcached-513921a47c6cf65e.rlib" "/opt/rustwide/target/debug/deps/libregex-31bb272e7528fb17.rlib" "/opt/rustwide/target/debug/deps/libutf8_ranges-529094c12f4c6718.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-da6dc9877a61e022.rlib" "/opt/rustwide/target/debug/deps/libucd_util-d66b5e68c34691a2.rlib" "/opt/rustwide/target/debug/deps/libthread_local-b4ea3733d5b8609e.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-8fc055f0648ce257.rlib" "/opt/rustwide/target/debug/deps/librusty_machine-53bbe1e15395ef1c.rlib" "/opt/rustwide/target/debug/deps/librulinalg-a7f6af988eca40d2.rlib" "/opt/rustwide/target/debug/deps/libnum-29c00b54fa122e11.rlib" "/opt/rustwide/target/debug/deps/libnum_iter-383ace21da403e34.rlib" "/opt/rustwide/target/debug/deps/libndarray-5254d3f51607c258.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-f8f66877011101ed.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-8128d727dae67411.rlib" "/opt/rustwide/target/debug/deps/libitertools-5c18c7d05dd298b9.rlib" "/opt/rustwide/target/debug/deps/libapprox-43f109a20b53ea58.rlib" "/opt/rustwide/target/debug/deps/librgsl-b786e218816b43d6.rlib" "/opt/rustwide/target/debug/deps/libc_vec-64fbe56db38e1418.rlib" "/opt/rustwide/target/debug/deps/liblog-1bfa4e4f3f840233.rlib" "/opt/rustwide/target/debug/deps/liblog-18e19f5b5787b169.rlib" "/opt/rustwide/target/debug/deps/libcfg_if-0d27f345b2a6a3cd.rlib" "/opt/rustwide/target/debug/deps/librust_htslib-51509ef051591a9c.rlib" "/opt/rustwide/target/debug/deps/liblzma_sys-d235364eeb67afad.rlib" "/opt/rustwide/target/debug/deps/libbzip2_sys-44fdcf896c5db4f4.rlib" "/opt/rustwide/target/debug/deps/liblibz_sys-519746493d8f9899.rlib" "/opt/rustwide/target/debug/deps/liblinear_map-3b4c0d366394053b.rlib" "/opt/rustwide/target/debug/deps/liburl-06380d169e8252a6.rlib" "/opt/rustwide/target/debug/deps/libpercent_encoding-76122f85aad64373.rlib" "/opt/rustwide/target/debug/deps/libidna-861f73d9e96468f0.rlib" "/opt/rustwide/target/debug/deps/libunicode_normalization-9937e5bde6b792fd.rlib" "/opt/rustwide/target/debug/deps/libtinyvec-37d41940def455b4.rlib" "/opt/rustwide/target/debug/deps/libtinyvec_macros-92a1c487a2a985df.rlib" "/opt/rustwide/target/debug/deps/libunicode_bidi-afe326ebf8dbe853.rlib" "/opt/rustwide/target/debug/deps/libmatches-9cfb84f2ef24c6e0.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-941278a3890dcd94.rlib" "/opt/rustwide/target/debug/deps/libitertools-3d5332196c5b1cb1.rlib" "/opt/rustwide/target/debug/deps/libieee754-3bfc628119067bf5.rlib" "/opt/rustwide/target/debug/deps/libbitflags-9edba51b86190379.rlib" "/opt/rustwide/target/debug/deps/libbio-10290f49e7c539de.rlib" "/opt/rustwide/target/debug/deps/libfxhash-4cbec7e9c2e67a31.rlib" "/opt/rustwide/target/debug/deps/libbyteorder-f30fa083324a1476.rlib" "/opt/rustwide/target/debug/deps/libvec_map-50bfb8b4e88b19f6.rlib" "/opt/rustwide/target/debug/deps/libstatrs-9be54903abb535a4.rlib" "/opt/rustwide/target/debug/deps/librand-6dfd27a57399b0ed.rlib" "/opt/rustwide/target/debug/deps/librand-09d71756e0b0b4c3.rlib" "/opt/rustwide/target/debug/deps/liblibc-d8303f359ee6d076.rlib" "/opt/rustwide/target/debug/deps/libfnv-059813dc4f8dd4c8.rlib" "/opt/rustwide/target/debug/deps/libbv-21ae15f52c6966da.rlib" "/opt/rustwide/target/debug/deps/libquick_error-9b86aa0409ef900d.rlib" "/opt/rustwide/target/debug/deps/libordered_float-021ff1e6c2f0f65c.rlib" "/opt/rustwide/target/debug/deps/libnum_integer-3eda5be0b7f54121.rlib" "/opt/rustwide/target/debug/deps/libnewtype_derive-49507b012087f5eb.rlib" "/opt/rustwide/target/debug/deps/libndarray-25fe531f0e85b66f.rlib" "/opt/rustwide/target/debug/deps/libnum_complex-167fd6e4063f9dd1.rlib" "/opt/rustwide/target/debug/deps/libmatrixmultiply-105e820d6b7a73b1.rlib" "/opt/rustwide/target/debug/deps/librawpointer-5bb9f6d71ce15809.rlib" "/opt/rustwide/target/debug/deps/libmultimap-0906342304a0163a.rlib" "/opt/rustwide/target/debug/deps/libitertools_num-72a0a75fbc94b1c6.rlib" "/opt/rustwide/target/debug/deps/libitertools-b0b3d384977af793.rlib" "/opt/rustwide/target/debug/deps/libeither-867d2789c96c5e02.rlib" "/opt/rustwide/target/debug/deps/libcustom_derive-2c0465fe865a0178.rlib" "/opt/rustwide/target/debug/deps/libcsv-dab50ba942868ea5.rlib" "/opt/rustwide/target/debug/deps/libryu-58d6bdbbdb00e196.rlib" "/opt/rustwide/target/debug/deps/libitoa-f0883342bffd153c.rlib" "/opt/rustwide/target/debug/deps/libcsv_core-74665dcaa254ec92.rlib" "/opt/rustwide/target/debug/deps/libbstr-98478b3c711b5cd2.rlib" "/opt/rustwide/target/debug/deps/libregex_automata-6938c5cf0487016d.rlib" "/opt/rustwide/target/debug/deps/libserde-95f901194f8eb088.rlib" "/opt/rustwide/target/debug/deps/libbytecount-993c23f6e62a1623.rlib" "/opt/rustwide/target/debug/deps/libbit_set-eec1e45ec04a002e.rlib" "/opt/rustwide/target/debug/deps/libbit_vec-0882e580dac8e806.rlib" "/opt/rustwide/target/debug/deps/libapprox-9fabff153a42bc3c.rlib" "/opt/rustwide/target/debug/deps/libnum_traits-d0a58c91d8ef5575.rlib" "/opt/rustwide/target/debug/deps/libbio_types-3909b7751f84df27.rlib" "/opt/rustwide/target/debug/deps/libthiserror-7f3e7d09d32ed626.rlib" "/opt/rustwide/target/debug/deps/libregex-a3872ea1c1199fca.rlib" "/opt/rustwide/target/debug/deps/libaho_corasick-e187271509b4f902.rlib" "/opt/rustwide/target/debug/deps/libmemchr-fdb14ed691dc70dd.rlib" "/opt/rustwide/target/debug/deps/libregex_syntax-b1f5a8f2fb571c3f.rlib" "/opt/rustwide/target/debug/deps/liblazy_static-e92083d5a39a8b50.rlib" "-Wl,--start-group" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd-197d933f09d9a590.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libpanic_unwind-46a006cddfd334f0.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libminiz_oxide-5b9870310e470b38.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libadler-260022ba8f1ab4ee.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libobject-71377435a799394f.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libaddr2line-658ee5924fde57cd.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libgimli-9e8627da6bd1b94a.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libstd_detect-19fdaac49f59be84.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_demangle-cb00e2691ea45905.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libhashbrown-50f6726defae5ae1.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_alloc-2afc16311deea26e.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libunwind-bb5cb0fe086ee8cf.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcfg_if-896053247b5dfd0b.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liblibc-735e1f2ac3cf23be.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/liballoc-9dfb6622644c732c.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/librustc_std_workspace_core-beea7d9617fe25c5.rlib" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcore-8ef7dd43fc671f88.rlib" "-Wl,--end-group" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib/libcompiler_builtins-a9a3b2ad67977f47.rlib" "-Wl,-Bdynamic" "-llzma" "-lz" "-lgcc_s" "-lutil" "-lrt" "-lpthread" "-lm" "-ldl" "-lc" "-Wl,--eh-frame-hdr" "-Wl,-znoexecstack" "-L" "/opt/rustwide/rustup-home/toolchains/beta-2021-08-01-x86_64-unknown-linux-gnu/lib/rustlib/x86_64-unknown-linux-gnu/lib" "-o" "/opt/rustwide/target/debug/deps/libprosic-bff63d77b9f499fa" "-Wl,--gc-sections" "-pie" "-Wl,-zrelro" "-Wl,-znow" "-nodefaultlibs"
[INFO] [stdout]   = note: /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-b786e218816b43d6.rlib(rgsl-b786e218816b43d6.rgsl.70d1f377-cgu.6.rcgu.o): in function `rgsl::error::erfc':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/error.rs:28: undefined reference to `gsl_sf_erfc'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-b786e218816b43d6.rlib(rgsl-b786e218816b43d6.rgsl.70d1f377-cgu.8.rcgu.o): in function `rgsl::randist::gaussian::gaussian_pdf':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:20: undefined reference to `gsl_ran_gaussian_pdf'
[INFO] [stdout]           /usr/bin/ld: /opt/rustwide/target/debug/deps/librgsl-b786e218816b43d6.rlib(rgsl-b786e218816b43d6.rgsl.70d1f377-cgu.8.rcgu.o): in function `rgsl::randist::gaussian::ugaussian_P':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/GSL-1.1.0/src/randist/gaussian.rs:73: undefined reference to `gsl_cdf_ugaussian_P'
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout]   = help: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified
[INFO] [stdout]   = note: use the `-l` flag to specify native libraries to link
[INFO] [stdout]   = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#cargorustc-link-libkindname)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to previous error; 34 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `libprosic` due to 2 previous errors; 34 warnings emitted
[INFO] running `Command { std: "docker" "inspect" "33b547731cb56cc2f337cfee73cf9ac85f5d31c5c64fb5a435680cd326bf01e2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "33b547731cb56cc2f337cfee73cf9ac85f5d31c5c64fb5a435680cd326bf01e2", kill_on_drop: false }`
[INFO] [stdout] 33b547731cb56cc2f337cfee73cf9ac85f5d31c5c64fb5a435680cd326bf01e2
