[INFO] cloning repository https://github.com/swemeshy/counts_to_csv
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/swemeshy/counts_to_csv" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fswemeshy%2Fcounts_to_csv", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fswemeshy%2Fcounts_to_csv'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 416d6b6a25b07251ddbe10a79b9b16a97b0d73c7
[INFO] testing swemeshy/counts_to_csv against beta-2021-08-01 for beta-1.55-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fswemeshy%2Fcounts_to_csv" "/workspace/builds/worker-5/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/swemeshy/counts_to_csv on toolchain beta-2021-08-01
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/swemeshy/counts_to_csv
[INFO] finished tweaking git repo https://github.com/swemeshy/counts_to_csv
[INFO] tweaked toml for git repo https://github.com/swemeshy/counts_to_csv written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] crate git repo https://github.com/swemeshy/counts_to_csv already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-08-01" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/aldanor/hdf5-rust.git`
[INFO] [stderr]     Updating git submodule `https://github.com/HDFGroup/hdf5.git`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] fe203f5ccecf080fe817e33efc567ee5dfdcc8faa791321cfae97eae08beb3cb
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "fe203f5ccecf080fe817e33efc567ee5dfdcc8faa791321cfae97eae08beb3cb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "fe203f5ccecf080fe817e33efc567ee5dfdcc8faa791321cfae97eae08beb3cb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fe203f5ccecf080fe817e33efc567ee5dfdcc8faa791321cfae97eae08beb3cb", kill_on_drop: false }`
[INFO] [stdout] fe203f5ccecf080fe817e33efc567ee5dfdcc8faa791321cfae97eae08beb3cb
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:34b6a614d2c27851fe6cbf88fbd1137609cefab8b10d0615aaeb6fd47975d74e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-08-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9c94927e6e3f0a705a9b0f1e05a88620fe8fcd59d4c1f1527de9a85c98dad949
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "9c94927e6e3f0a705a9b0f1e05a88620fe8fcd59d4c1f1527de9a85c98dad949", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling libc v0.2.88
[INFO] [stderr]    Compiling syn v1.0.67
[INFO] [stderr]    Compiling inventory v0.1.10
[INFO] [stderr]    Compiling unindent v0.1.7
[INFO] [stderr]    Compiling hdf5-types v0.7.1 (https://github.com/aldanor/hdf5-rust.git?rev=24beeaa914a05c67adc78f0c161925fd4627d407#24beeaa9)
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling ascii v1.0.0
[INFO] [stderr]    Compiling hdf5 v0.7.1 (https://github.com/aldanor/hdf5-rust.git?rev=24beeaa914a05c67adc78f0c161925fd4627d407#24beeaa9)
[INFO] [stderr]    Compiling pyo3 v0.13.2
[INFO] [stderr]    Compiling number_prefix v0.3.0
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling matrixmultiply v0.3.1
[INFO] [stderr]    Compiling matrixmultiply v0.2.4
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling paste-impl v0.1.18
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling regex v1.4.4
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling num-complex v0.4.0
[INFO] [stderr]    Compiling ndarray v0.15.3
[INFO] [stderr]    Compiling paste v0.1.18
[INFO] [stderr]    Compiling alga v0.9.3
[INFO] [stderr]    Compiling parking_lot_core v0.8.3
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling num_cpus v1.13.0
[INFO] [stderr]    Compiling terminal_size v0.1.16
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling console v0.14.1
[INFO] [stderr]    Compiling colored v1.9.3
[INFO] [stderr]    Compiling parking_lot v0.11.1
[INFO] [stderr]    Compiling rayon-core v1.9.0
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling indicatif v0.15.0
[INFO] [stderr]    Compiling hdf5-sys v0.7.1 (https://github.com/aldanor/hdf5-rust.git?rev=24beeaa914a05c67adc78f0c161925fd4627d407#24beeaa9)
[INFO] [stderr]    Compiling rayon v1.5.0
[INFO] [stderr]    Compiling simple_logger v1.11.0
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.1 (https://github.com/aldanor/hdf5-rust.git?rev=24beeaa914a05c67adc78f0c161925fd4627d407#24beeaa9)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-edcd0b2e42e60376/build-script-build` (exit status: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/git/checkouts/hdf5-rust-c1072d7a2617f7d8/24beeaa/hdf5-sys/build.rs:547:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55a9539e25b0 - std::backtrace_rs::backtrace::libunwind::trace::hff4d1766e93f64f1
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5
[INFO] [stderr]      1:     0x55a9539e25b0 - std::backtrace_rs::backtrace::trace_unsynchronized::h56bbc8eb78770bcb
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5
[INFO] [stderr]      2:     0x55a9539e25b0 - std::sys_common::backtrace::_print_fmt::h5c8e75464faca780
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/sys_common/backtrace.rs:67:5
[INFO] [stderr]      3:     0x55a9539e25b0 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h48b88277def8b362
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/sys_common/backtrace.rs:46:22
[INFO] [stderr]      4:     0x55a953a00afc - core::fmt::write::h3381b3176fe2b3d3
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/core/src/fmt/mod.rs:1115:17
[INFO] [stderr]      5:     0x55a9539dfb55 - std::io::Write::write_fmt::hd42607e5d8e44db0
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/io/mod.rs:1665:15
[INFO] [stderr]      6:     0x55a9539e462b - std::sys_common::backtrace::_print::ha537687d6c17dd0d
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/sys_common/backtrace.rs:49:5
[INFO] [stderr]      7:     0x55a9539e462b - std::sys_common::backtrace::print::h61376ae57d131d72
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/sys_common/backtrace.rs:36:9
[INFO] [stderr]      8:     0x55a9539e462b - std::panicking::default_hook::{{closure}}::h0f7208c0b9644a54
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panicking.rs:208:50
[INFO] [stderr]      9:     0x55a9539e4101 - std::panicking::default_hook::hdac7fc06578c14ce
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panicking.rs:225:9
[INFO] [stderr]     10:     0x55a9539e4cf4 - std::panicking::rust_panic_with_hook::h72b21c283da3d1ef
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panicking.rs:622:17
[INFO] [stderr]     11:     0x55a9538192b3 - std::panicking::begin_panic::{{closure}}::h7c3abe07ab5c7a61
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panicking.rs:542:9
[INFO] [stderr]     12:     0x55a953818f09 - std::sys_common::backtrace::__rust_end_short_backtrace::h0028684ae88db497
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/sys_common/backtrace.rs:141:18
[INFO] [stderr]     13:     0x55a9538191e9 - std::panicking::begin_panic::h8aa5574d628ad97a
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panicking.rs:541:12
[INFO] [stderr]     14:     0x55a9537e8d67 - build_script_build::LibrarySearcher::try_locate_hdf5_library::h3a9efccb98271252
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/git/checkouts/hdf5-rust-c1072d7a2617f7d8/24beeaa/hdf5-sys/build.rs:547:13
[INFO] [stderr]     15:     0x55a9537ea58b - build_script_build::main::hb12c0bef112c1ab9
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/git/checkouts/hdf5-rust-c1072d7a2617f7d8/24beeaa/hdf5-sys/build.rs:645:9
[INFO] [stderr]     16:     0x55a9537edf0b - core::ops::function::FnOnce::call_once::h2067773592ede4f3
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/core/src/ops/function.rs:227:5
[INFO] [stderr]     17:     0x55a9537f6d6e - std::sys_common::backtrace::__rust_begin_short_backtrace::ha2b45fcc6cd036c6
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/sys_common/backtrace.rs:125:18
[INFO] [stderr]     18:     0x55a9537f5fa1 - std::rt::lang_start::{{closure}}::h8df1bb1a47f0cd79
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/rt.rs:63:18
[INFO] [stderr]     19:     0x55a9539e51fa - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::ha88a7d1a4d24e549
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/core/src/ops/function.rs:259:13
[INFO] [stderr]     20:     0x55a9539e51fa - std::panicking::try::do_call::hd3b1d7740607ccc7
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panicking.rs:401:40
[INFO] [stderr]     21:     0x55a9539e51fa - std::panicking::try::h0ee8c65ac7461507
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panicking.rs:365:19
[INFO] [stderr]     22:     0x55a9539e51fa - std::panic::catch_unwind::head47f0de4ccd838
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panic.rs:434:14
[INFO] [stderr]     23:     0x55a9539e51fa - std::rt::lang_start_internal::{{closure}}::hbc7de8ec820ac085
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/rt.rs:45:48
[INFO] [stderr]     24:     0x55a9539e51fa - std::panicking::try::do_call::h2609e52e8bad4a7b
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panicking.rs:401:40
[INFO] [stderr]     25:     0x55a9539e51fa - std::panicking::try::hd0929f0b603e0389
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panicking.rs:365:19
[INFO] [stderr]     26:     0x55a9539e51fa - std::panic::catch_unwind::h27902b81c3e47571
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/panic.rs:434:14
[INFO] [stderr]     27:     0x55a9539e51fa - std::rt::lang_start_internal::h3fb2d794dd391e3e
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/rt.rs:45:20
[INFO] [stderr]     28:     0x55a9537f5f70 - std::rt::lang_start::hc191de62b94417cf
[INFO] [stderr]                                  at /rustc/53fd98ca776cb875bc9e5514f56b52eb74f9e7a9/library/std/src/rt.rs:62:5
[INFO] [stderr]     29:     0x55a9537eba7c - main
[INFO] [stderr]     30:     0x7f17657dc0b3 - __libc_start_main
[INFO] [stderr]     31:     0x55a9537e3f0e - _start
[INFO] [stderr]     32:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "9c94927e6e3f0a705a9b0f1e05a88620fe8fcd59d4c1f1527de9a85c98dad949", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9c94927e6e3f0a705a9b0f1e05a88620fe8fcd59d4c1f1527de9a85c98dad949", kill_on_drop: false }`
[INFO] [stdout] 9c94927e6e3f0a705a9b0f1e05a88620fe8fcd59d4c1f1527de9a85c98dad949
