[INFO] fetching crate openmm-sys 7.4.1... [INFO] testing openmm-sys-7.4.1 against beta-2021-01-01 for beta-1.50-1 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain beta-2021-01-01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 23e837917fc4507104133e26265012adc500d32f19e4bc9c49ffd6fae8377828 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "23e837917fc4507104133e26265012adc500d32f19e4bc9c49ffd6fae8377828", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "23e837917fc4507104133e26265012adc500d32f19e4bc9c49ffd6fae8377828", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "23e837917fc4507104133e26265012adc500d32f19e4bc9c49ffd6fae8377828", kill_on_drop: false }` [INFO] [stdout] 23e837917fc4507104133e26265012adc500d32f19e4bc9c49ffd6fae8377828 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] a2182d283f222025bbef2eebda2440280c65ba4328daab63d07c03fe1662872a [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a2182d283f222025bbef2eebda2440280c65ba4328daab63d07c03fe1662872a", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-d7c6228d0c11dd8e/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-4d7190bfa2326d7a/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-4d7190bfa2326d7a/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x5563ed871297 - std::backtrace_rs::backtrace::libunwind::trace::hcd6e187547b8deec [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x5563ed871297 - std::backtrace_rs::backtrace::trace_unsynchronized::hde10036eb783fbc7 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x5563ed871297 - std::sys_common::backtrace::_print_fmt::h63987b8f86dfc82a [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x5563ed871297 - ::fmt::hc33f3ac4cc9c4196 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x5563ed88e33c - core::fmt::write::hfdcdeb08fb2b3afa [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x5563ed86d7b2 - std::io::Write::write_fmt::h83a843778fa2a815 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x5563ed873895 - std::sys_common::backtrace::_print::hf179508b01f66878 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x5563ed873895 - std::sys_common::backtrace::print::ha97d11adb39266a6 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x5563ed873895 - std::panicking::default_hook::{{closure}}::h8da9985a98bd1582 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x5563ed8733ea - std::panicking::default_hook::hbc0ee792993c2ef2 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x5563ed874031 - std::panicking::rust_panic_with_hook::h9fb9cda33a10f084 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x5563ed873b77 - std::panicking::begin_panic_handler::{{closure}}::hf3e83396e085962e [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:497:13 [INFO] [stderr] 12: 0x5563ed87175c - std::sys_common::backtrace::__rust_end_short_backtrace::hac151ac4c1e3252d [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x5563ed873ad9 - rust_begin_unwind [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:493:5 [INFO] [stderr] 14: 0x5563ed873a8b - std::panicking::begin_panic_fmt::h01a0df196b065ae4 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:435:5 [INFO] [stderr] 15: 0x5563ed801a3e - cmake::fail::hc08340ac3c0584cd [INFO] [stderr] 16: 0x5563ed8013ac - cmake::run::ha662d2d4810c62ac [INFO] [stderr] 17: 0x5563ed7fcde3 - cmake::Config::build::h2e1297bfeea0f392 [INFO] [stderr] 18: 0x5563ed7f799c - build_script_build::main::h7e37fda31bdca1d8 [INFO] [stderr] 19: 0x5563ed7f8323 - core::ops::function::FnOnce::call_once::h80b89cd32f70d313 [INFO] [stderr] 20: 0x5563ed7f82c9 - std::sys_common::backtrace::__rust_begin_short_backtrace::h7415450c0873f007 [INFO] [stderr] 21: 0x5563ed7f9f99 - std::rt::lang_start::{{closure}}::hf0000c8ec4264817 [INFO] [stderr] 22: 0x5563ed874457 - core::ops::function::impls:: for &F>::call_once::hb5ab992a536e3d7c [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x5563ed874457 - std::panicking::try::do_call::h1bda883686bc1816 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:379:40 [INFO] [stderr] 24: 0x5563ed874457 - std::panicking::try::ha7167c079f243e71 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:343:19 [INFO] [stderr] 25: 0x5563ed874457 - std::panic::catch_unwind::he11c3de53f0b5853 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panic.rs:396:14 [INFO] [stderr] 26: 0x5563ed874457 - std::rt::lang_start_internal::h45c3666b51d25060 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x5563ed7f9f78 - std::rt::lang_start::h88cbdf4d944c0c98 [INFO] [stderr] 28: 0x5563ed7f7b5b - main [INFO] [stderr] 29: 0x7f1dbc6e60b3 - __libc_start_main [INFO] [stderr] 30: 0x5563ed7f40ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "a2182d283f222025bbef2eebda2440280c65ba4328daab63d07c03fe1662872a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a2182d283f222025bbef2eebda2440280c65ba4328daab63d07c03fe1662872a", kill_on_drop: false }` [INFO] [stdout] a2182d283f222025bbef2eebda2440280c65ba4328daab63d07c03fe1662872a