[INFO] fetching crate netcdf 0.5.2... [INFO] testing netcdf-0.5.2 against beta-2021-01-01 for beta-1.50-1 [INFO] extracting crate netcdf 0.5.2 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate netcdf 0.5.2 on toolchain beta-2021-01-01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate netcdf 0.5.2 [INFO] finished tweaking crates.io crate netcdf 0.5.2 [INFO] tweaked toml for crates.io crate netcdf 0.5.2 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate netcdf 0.5.2 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded netcdf-sys v0.3.3 [INFO] [stderr] Downloaded libloading v0.6.4 [INFO] [stderr] Downloaded syn v1.0.46 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 2b7363b69bcf99cb3d9edd8794b9de494c77e2f81298abfbd337191e539eca56 [INFO] running `Command { std: "docker" "start" "-a" "2b7363b69bcf99cb3d9edd8794b9de494c77e2f81298abfbd337191e539eca56", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2b7363b69bcf99cb3d9edd8794b9de494c77e2f81298abfbd337191e539eca56", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2b7363b69bcf99cb3d9edd8794b9de494c77e2f81298abfbd337191e539eca56", kill_on_drop: false }` [INFO] [stdout] 2b7363b69bcf99cb3d9edd8794b9de494c77e2f81298abfbd337191e539eca56 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 09265b42c9e2eb4ff4dd17c74815d0fc45de280f7362b7546541f7f40807dedf [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "09265b42c9e2eb4ff4dd17c74815d0fc45de280f7362b7546541f7f40807dedf", kill_on_drop: false }` [INFO] [stderr] Compiling netcdf-sys v0.3.3 [INFO] [stderr] Compiling libloading v0.6.4 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-114e3ec42d19f90c/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55e65f838d87 - std::backtrace_rs::backtrace::libunwind::trace::hcd6e187547b8deec [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/../../backtrace/src/backtrace/libunwind.rs:90:5 [INFO] [stderr] 1: 0x55e65f838d87 - std::backtrace_rs::backtrace::trace_unsynchronized::hde10036eb783fbc7 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55e65f838d87 - std::sys_common::backtrace::_print_fmt::h63987b8f86dfc82a [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55e65f838d87 - ::fmt::hc33f3ac4cc9c4196 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55e65f854bec - core::fmt::write::hfdcdeb08fb2b3afa [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55e65f835912 - std::io::Write::write_fmt::h83a843778fa2a815 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/io/mod.rs:1519:15 [INFO] [stderr] 6: 0x55e65f83ae25 - std::sys_common::backtrace::_print::hf179508b01f66878 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55e65f83ae25 - std::sys_common::backtrace::print::ha97d11adb39266a6 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55e65f83ae25 - std::panicking::default_hook::{{closure}}::h8da9985a98bd1582 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55e65f83a97a - std::panicking::default_hook::hbc0ee792993c2ef2 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:225:9 [INFO] [stderr] 10: 0x55e65f83b5c1 - std::panicking::rust_panic_with_hook::h9fb9cda33a10f084 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:591:17 [INFO] [stderr] 11: 0x55e65f7909be - std::panicking::begin_panic::{{closure}}::h701a538f570328eb [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:520:9 [INFO] [stderr] 12: 0x55e65f7641d9 - std::sys_common::backtrace::__rust_end_short_backtrace::hf21d715d4935be45 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55e65f7908eb - std::panicking::begin_panic::h0b90bed32f203eeb [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:519:12 [INFO] [stderr] 14: 0x55e65f61315b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h1ff688a3a2fcfad1 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55e65f614a33 - build_script_build::main::ha8f5ab238fc15a2f [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55e65f620cbb - core::ops::function::FnOnce::call_once::h2a4337425c90d143 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55e65f617dfe - std::sys_common::backtrace::__rust_begin_short_backtrace::hed8fa8fbe1387411 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55e65f61fe11 - std::rt::lang_start::{{closure}}::ha120dc432008fd27 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55e65f83b9e7 - core::ops::function::impls:: for &F>::call_once::hb5ab992a536e3d7c [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55e65f83b9e7 - std::panicking::try::do_call::h1bda883686bc1816 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:379:40 [INFO] [stderr] 21: 0x55e65f83b9e7 - std::panicking::try::ha7167c079f243e71 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panicking.rs:343:19 [INFO] [stderr] 22: 0x55e65f83b9e7 - std::panic::catch_unwind::he11c3de53f0b5853 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55e65f83b9e7 - std::rt::lang_start_internal::h45c3666b51d25060 [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55e65f61fde7 - std::rt::lang_start::h3576c30f620c057c [INFO] [stderr] at /rustc/25b3db3aa752d9d4633c983c9d4bf5e48f9baff1/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55e65f61607a - main [INFO] [stderr] 26: 0x7ffbae12a0b3 - __libc_start_main [INFO] [stderr] 27: 0x55e65f60e0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "09265b42c9e2eb4ff4dd17c74815d0fc45de280f7362b7546541f7f40807dedf", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "09265b42c9e2eb4ff4dd17c74815d0fc45de280f7362b7546541f7f40807dedf", kill_on_drop: false }` [INFO] [stdout] 09265b42c9e2eb4ff4dd17c74815d0fc45de280f7362b7546541f7f40807dedf