[INFO] fetching crate ncbitaxonomy 1.0.7... [INFO] testing ncbitaxonomy-1.0.7 against beta-2021-01-01 for beta-1.50-1 [INFO] extracting crate ncbitaxonomy 1.0.7 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate ncbitaxonomy 1.0.7 on toolchain beta-2021-01-01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] finished tweaking crates.io crate ncbitaxonomy 1.0.7 [INFO] tweaked toml for crates.io crate ncbitaxonomy 1.0.7 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate crates.io crate ncbitaxonomy 1.0.7 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded backtrace v0.3.49 [INFO] [stderr] Downloaded adler32 v1.1.0 [INFO] [stderr] Downloaded textwrap v0.10.0 [INFO] [stderr] Downloaded bio-types v0.6.0 [INFO] [stderr] Downloaded ordered-float v1.0.2 [INFO] [stderr] Downloaded statrs v0.9.0 [INFO] [stderr] Downloaded indextree v3.3.0 [INFO] [stderr] Downloaded serde_derive v1.0.112 [INFO] [stderr] Downloaded dotenv v0.9.0 [INFO] [stderr] Downloaded clap v2.32.0 [INFO] [stderr] Downloaded bv v0.10.0 [INFO] [stderr] Downloaded bio v0.25.0 [INFO] [stderr] Downloaded syn v1.0.31 [INFO] [stderr] Downloaded serde v1.0.112 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] b24931b649ad740e2eaf8e8716b2e259d61d19665f111c61a50c03e789cba530 [INFO] running `Command { std: "docker" "start" "-a" "b24931b649ad740e2eaf8e8716b2e259d61d19665f111c61a50c03e789cba530", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "b24931b649ad740e2eaf8e8716b2e259d61d19665f111c61a50c03e789cba530", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b24931b649ad740e2eaf8e8716b2e259d61d19665f111c61a50c03e789cba530", kill_on_drop: false }` [INFO] [stdout] b24931b649ad740e2eaf8e8716b2e259d61d19665f111c61a50c03e789cba530 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 1a1921fa5db872d8dde2a5a06cef33ee20f8ac7c9dade03a2526ebed1f881f48 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1a1921fa5db872d8dde2a5a06cef33ee20f8ac7c9dade03a2526ebed1f881f48", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.31 [INFO] [stderr] Compiling libc v0.2.71 [INFO] [stderr] Compiling serde v1.0.112 [INFO] [stderr] Compiling ndarray v0.12.1 [INFO] [stderr] Compiling bio v0.25.0 [INFO] [stderr] Compiling bytecount v0.3.2 [INFO] [stderr] Compiling libsqlite3-sys v0.18.0 [INFO] [stderr] Compiling bv v0.10.0 [INFO] [stderr] Compiling itertools v0.7.11 [INFO] [stderr] Compiling textwrap v0.10.0 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling backtrace v0.3.49 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling dotenv v0.9.0 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling statrs v0.9.0 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling synstructure v0.12.4 [INFO] [stderr] Compiling serde_derive v1.0.112 [INFO] [stderr] Compiling diesel_derives v1.4.1 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling failure_derive v0.1.8 [INFO] [stderr] Compiling thiserror-impl v1.0.20 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling thiserror v1.0.20 [INFO] [stderr] Compiling indextree v3.3.0 [INFO] [stderr] Compiling diesel v1.4.5 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling multimap v0.4.0 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling clap v2.32.0 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling migrations_internals v1.4.1 [INFO] [stderr] Compiling migrations_macros v1.4.2 [INFO] [stderr] Compiling diesel_migrations v1.4.0 [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 1m 46s [INFO] running `Command { std: "docker" "inspect" "1a1921fa5db872d8dde2a5a06cef33ee20f8ac7c9dade03a2526ebed1f881f48", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1a1921fa5db872d8dde2a5a06cef33ee20f8ac7c9dade03a2526ebed1f881f48", kill_on_drop: false }` [INFO] [stdout] 1a1921fa5db872d8dde2a5a06cef33ee20f8ac7c9dade03a2526ebed1f881f48 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 85ed9918ead7323a9e24b1f6e8c26ce89d1c2f9b26df2d535d21b0027f14cb5e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "85ed9918ead7323a9e24b1f6e8c26ce89d1c2f9b26df2d535d21b0027f14cb5e", kill_on_drop: false }` [INFO] [stderr] Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 7.03s [INFO] running `Command { std: "docker" "inspect" "85ed9918ead7323a9e24b1f6e8c26ce89d1c2f9b26df2d535d21b0027f14cb5e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "85ed9918ead7323a9e24b1f6e8c26ce89d1c2f9b26df2d535d21b0027f14cb5e", kill_on_drop: false }` [INFO] [stdout] 85ed9918ead7323a9e24b1f6e8c26ce89d1c2f9b26df2d535d21b0027f14cb5e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 811496e7aa62992c926f04bb590a0b016d539d524472494c9133e57907936675 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "811496e7aa62992c926f04bb590a0b016d539d524472494c9133e57907936675", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.16s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/ncbitaxonomy-ef4242986d6b37be [INFO] [stdout] [INFO] [stdout] running 23 tests [INFO] [stdout] test tests::contains_name ... ok [INFO] [stdout] test tests::descendants ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::distance_to_common_ancestor ... ok [INFO] [stdout] test tests::sqlite_contains_id ... ok [INFO] [stdout] test tests::contains_id ... ok [INFO] [stdout] test tests::sqlite_contains_name ... ok [INFO] [stdout] test tests::sqlite_get_name_by_id ... ok [INFO] [stdout] test tests::get_id_by_node ... ok [INFO] [stdout] test tests::get_lineage_sqlite ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_canonical ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::sqlite_descendants ... ok [INFO] [stdout] test tests::sqlite_taxid_descendants ... ok [INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid ... ok [INFO] [stdout] test tests::distance_to_common_ancestor_taxid_canonical ... ok [INFO] [stdout] test tests::get_name_by_id ... ok [INFO] [stdout] test tests::get_lineage ... ok [INFO] [stdout] test tests::get_node_by_id ... ok [INFO] [stdout] test tests::traversal ... ok [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_fastq-8c9ebbf554a9aa73 [INFO] [stdout] test tests::taxid_descendants ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.42s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_filter_refseq-e356e24ed54d3455 [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/taxonomy_util-d2e94b87ac0a24a9 [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Doc-tests ncbitaxonomy [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib.rs - NcbiFileTaxonomy::from_ncbi_files (line 105) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.85s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "811496e7aa62992c926f04bb590a0b016d539d524472494c9133e57907936675", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "811496e7aa62992c926f04bb590a0b016d539d524472494c9133e57907936675", kill_on_drop: false }` [INFO] [stdout] 811496e7aa62992c926f04bb590a0b016d539d524472494c9133e57907936675