[INFO] fetching crate fmlrc 0.1.3... [INFO] testing fmlrc-0.1.3 against beta-2021-01-01 for beta-1.50-1 [INFO] extracting crate fmlrc 0.1.3 into /workspace/builds/worker-2/source [INFO] validating manifest of crates.io crate fmlrc 0.1.3 on toolchain beta-2021-01-01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate fmlrc 0.1.3 [INFO] finished tweaking crates.io crate fmlrc 0.1.3 [INFO] tweaked toml for crates.io crate fmlrc 0.1.3 written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate crates.io crate fmlrc 0.1.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 0d50dcae54f3621165b7468c8fc19c685e4790ae4f0e0e18d193764d1c0f9f40 [INFO] running `Command { std: "docker" "start" "-a" "0d50dcae54f3621165b7468c8fc19c685e4790ae4f0e0e18d193764d1c0f9f40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0d50dcae54f3621165b7468c8fc19c685e4790ae4f0e0e18d193764d1c0f9f40", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0d50dcae54f3621165b7468c8fc19c685e4790ae4f0e0e18d193764d1c0f9f40", kill_on_drop: false }` [INFO] [stdout] 0d50dcae54f3621165b7468c8fc19c685e4790ae4f0e0e18d193764d1c0f9f40 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c776babcdca295323c6bd25d8a23f6a562886e7e2173d0eb4b7f5130a6dbb383 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c776babcdca295323c6bd25d8a23f6a562886e7e2173d0eb4b7f5130a6dbb383", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.70 [INFO] [stderr] Compiling proc-macro2 v1.0.18 [INFO] [stderr] Compiling syn v1.0.33 [INFO] [stderr] Compiling serde_derive v1.0.114 [INFO] [stderr] Compiling serde v1.0.114 [INFO] [stderr] Compiling getrandom v0.1.14 [INFO] [stderr] Compiling ppv-lite86 v0.2.8 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling regex-syntax v0.6.17 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling adler32 v1.1.0 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling ordermap v0.3.5 [INFO] [stderr] Compiling either v1.5.3 [INFO] [stderr] Compiling fixedbitset v0.1.9 [INFO] [stderr] Compiling serde_json v1.0.58 [INFO] [stderr] Compiling bytecount v0.6.0 [INFO] [stderr] Compiling safemem v0.3.3 [INFO] [stderr] Compiling bio v0.31.0 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling termcolor v1.1.0 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling exitcode v1.1.2 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling lzma-sys v0.1.16 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling num-integer v0.1.43 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling matrixmultiply v0.2.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling miniz_oxide v0.3.7 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling petgraph v0.4.13 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling aho-corasick v0.7.10 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling buf_redux v0.8.4 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling ordered-float v1.0.2 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling subprocess v0.2.4 [INFO] [stderr] Compiling bzip2 v0.3.3 [INFO] [stderr] Compiling xz2 v0.1.6 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling threadpool v1.8.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling needletail v0.4.0 [INFO] [stderr] Compiling regex v1.3.7 [INFO] [stderr] Compiling rand v0.3.23 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling libmath v0.1.4 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling snafu-derive v0.6.8 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling snafu v0.6.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bstr v0.2.13 [INFO] [stderr] Compiling multimap v0.6.0 [INFO] [stderr] Compiling bio-types v0.6.0 [INFO] [stderr] Compiling clap v2.33.1 [INFO] [stderr] Compiling csv v1.1.3 [INFO] [stderr] Compiling fmlrc v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 22s [INFO] running `Command { std: "docker" "inspect" "c776babcdca295323c6bd25d8a23f6a562886e7e2173d0eb4b7f5130a6dbb383", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c776babcdca295323c6bd25d8a23f6a562886e7e2173d0eb4b7f5130a6dbb383", kill_on_drop: false }` [INFO] [stdout] c776babcdca295323c6bd25d8a23f6a562886e7e2173d0eb4b7f5130a6dbb383 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 0733dd7119ba911c0792f5e900f6e9b25a06b298740f67c901b5d7d0d4b5f3e4 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "0733dd7119ba911c0792f5e900f6e9b25a06b298740f67c901b5d7d0d4b5f3e4", kill_on_drop: false }` [INFO] [stderr] Compiling rayon-core v1.7.1 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling oorandom v11.1.2 [INFO] [stderr] Compiling crossbeam-utils v0.7.2 [INFO] [stderr] Compiling memoffset v0.5.4 [INFO] [stderr] Compiling crossbeam-epoch v0.8.2 [INFO] [stderr] Compiling rayon v1.3.1 [INFO] [stderr] Compiling cast v0.2.3 [INFO] [stderr] Compiling plotters v0.2.15 [INFO] [stderr] Compiling tinytemplate v1.1.0 [INFO] [stderr] Compiling walkdir v2.3.1 [INFO] [stderr] Compiling criterion-plot v0.4.2 [INFO] [stderr] Compiling crossbeam-queue v0.2.3 [INFO] [stderr] Compiling crossbeam-deque v0.7.3 [INFO] [stderr] Compiling criterion v0.3.2 [INFO] [stderr] Compiling fmlrc v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 28.09s [INFO] running `Command { std: "docker" "inspect" "0733dd7119ba911c0792f5e900f6e9b25a06b298740f67c901b5d7d0d4b5f3e4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0733dd7119ba911c0792f5e900f6e9b25a06b298740f67c901b5d7d0d4b5f3e4", kill_on_drop: false }` [INFO] [stdout] 0733dd7119ba911c0792f5e900f6e9b25a06b298740f67c901b5d7d0d4b5f3e4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 94913e1966505a0e83b770821f9e8d6930936524f3d02752503e4dc91cd5ee68 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "94913e1966505a0e83b770821f9e8d6930936524f3d02752503e4dc91cd5ee68", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.14s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/fmlrc-e5815daab165d167 [INFO] [stdout] [INFO] [stdout] running 29 tests [INFO] [stdout] test indexed_bit_vec::tests::test_rank ... ok [INFO] [stdout] test bwt_converter::tests::test_newline ... ok [INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok [INFO] [stdout] test indexed_bit_vec::tests::test_allocation ... ok [INFO] [stdout] test indexed_bit_vec::tests::test_set_bit ... ok [INFO] [stdout] test ordered_fasta_writer::tests::test_fasta_writing ... ok [INFO] [stdout] test indexed_bit_vec::tests::test_indexing ... ok [INFO] [stdout] test indexed_bit_vec::tests::test_offset ... ok [INFO] [stdout] test bwt_converter::tests::test_compression ... ok [INFO] [stdout] test ropebwt2_util::tests::test_from_fastqs ... ignored [INFO] [stdout] test ropebwt2_util::tests::test_from_strings ... ignored [INFO] [stdout] test read_correction::tests::test_triple_accel ... ok [INFO] [stdout] test stats_util::tests::test_median ... ok [INFO] [stdout] test string_util::tests::test_convert_stoi ... ok [INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok [INFO] [stdout] test string_util::tests::test_reverse_complement_i ... ok [INFO] [stdout] test string_util::tests::test_simple_index ... ok [INFO] [stdout] test string_util::tests::test_convert_itos ... ok [INFO] [stdout] test bv_bwt::tests::test_simple_index ... ok [INFO] [stdout] test bv_bwt::tests::test_simple_pileup ... ok [INFO] [stdout] test bv_bwt::tests::test_load_from_file ... test bv_bwt::tests::test_load_from_file has been running for over 60 seconds [INFO] [stdout] test bwt_converter::tests::test_bwt_conversion ... test bwt_converter::tests::test_bwt_conversion has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_assemble ... test read_correction::tests::test_assemble has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_bridge ... test read_correction::tests::test_bridge has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_correction_deletion_special ... test read_correction::tests::test_correction_deletion_special has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_correction_job ... test read_correction::tests::test_correction_job has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_correction_pass ... test read_correction::tests::test_correction_pass has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_diploid_correction_pass ... test read_correction::tests::test_diploid_correction_pass has been running for over 60 seconds [INFO] [stdout] test read_correction::tests::test_expansion_bridge ... test read_correction::tests::test_expansion_bridge has been running for over 60 seconds [ERROR] error running command: no output for 300 seconds [INFO] running `Command { std: "docker" "inspect" "94913e1966505a0e83b770821f9e8d6930936524f3d02752503e4dc91cd5ee68", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "94913e1966505a0e83b770821f9e8d6930936524f3d02752503e4dc91cd5ee68", kill_on_drop: false }` [INFO] [stdout] 94913e1966505a0e83b770821f9e8d6930936524f3d02752503e4dc91cd5ee68