[INFO] fetching crate checkm 0.1.0... [INFO] testing checkm-0.1.0 against beta-2021-01-01 for beta-1.50-1 [INFO] extracting crate checkm 0.1.0 into /workspace/builds/worker-1/source [INFO] validating manifest of crates.io crate checkm 0.1.0 on toolchain beta-2021-01-01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate checkm 0.1.0 [INFO] finished tweaking crates.io crate checkm 0.1.0 [INFO] tweaked toml for crates.io crate checkm 0.1.0 written to /workspace/builds/worker-1/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] e713c6d2b515a4c87816ecf6a9c3cfca624dc63d1c1d63c08b69e3446f3653ab [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "e713c6d2b515a4c87816ecf6a9c3cfca624dc63d1c1d63c08b69e3446f3653ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "e713c6d2b515a4c87816ecf6a9c3cfca624dc63d1c1d63c08b69e3446f3653ab", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "e713c6d2b515a4c87816ecf6a9c3cfca624dc63d1c1d63c08b69e3446f3653ab", kill_on_drop: false }` [INFO] [stdout] e713c6d2b515a4c87816ecf6a9c3cfca624dc63d1c1d63c08b69e3446f3653ab [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 421c9d2c6c73c826a41df1e9d775f2d2f98884b77b4e8bdcdb86f640058cc23e [INFO] running `Command { std: "docker" "start" "-a" "421c9d2c6c73c826a41df1e9d775f2d2f98884b77b4e8bdcdb86f640058cc23e", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling bstr v0.2.14 [INFO] [stderr] Compiling csv v1.1.5 [INFO] [stderr] Compiling checkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 6.86s [INFO] running `Command { std: "docker" "inspect" "421c9d2c6c73c826a41df1e9d775f2d2f98884b77b4e8bdcdb86f640058cc23e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "421c9d2c6c73c826a41df1e9d775f2d2f98884b77b4e8bdcdb86f640058cc23e", kill_on_drop: false }` [INFO] [stdout] 421c9d2c6c73c826a41df1e9d775f2d2f98884b77b4e8bdcdb86f640058cc23e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 2befb415aabf0fbdb6a94e9dca75cbb6b3028df0471b42872999df640ea91dc4 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2befb415aabf0fbdb6a94e9dca75cbb6b3028df0471b42872999df640ea91dc4", kill_on_drop: false }` [INFO] [stderr] Compiling checkm v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.52s [INFO] running `Command { std: "docker" "inspect" "2befb415aabf0fbdb6a94e9dca75cbb6b3028df0471b42872999df640ea91dc4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2befb415aabf0fbdb6a94e9dca75cbb6b3028df0471b42872999df640ea91dc4", kill_on_drop: false }` [INFO] [stdout] 2befb415aabf0fbdb6a94e9dca75cbb6b3028df0471b42872999df640ea91dc4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 969ff21d288f720aaaaf2d6d288a71737eb2b538fd95c194a53de5113ea560a7 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "969ff21d288f720aaaaf2d6d288a71737eb2b538fd95c194a53de5113ea560a7", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.05s [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/checkm-01935789f5cf9947 [INFO] [stdout] running 6 tests [INFO] [stdout] test test::test_fasta_ordering_4times_min_completeness ... ok [INFO] [stdout] test test::test_good_quality_genome_names ... ok [INFO] [stdout] test test::test_ordering_5times ... ok [INFO] [stdout] test test::test_ordering_4times ... ok [INFO] [stdout] test test::test_fasta_ordering_4times ... ok [INFO] [stdout] test test::test_retrieve ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 6 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] [stderr] Doc-tests checkm [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "969ff21d288f720aaaaf2d6d288a71737eb2b538fd95c194a53de5113ea560a7", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "969ff21d288f720aaaaf2d6d288a71737eb2b538fd95c194a53de5113ea560a7", kill_on_drop: false }` [INFO] [stdout] 969ff21d288f720aaaaf2d6d288a71737eb2b538fd95c194a53de5113ea560a7