[INFO] cloning repository https://github.com/zaeleus/noodles-count-features [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/zaeleus/noodles-count-features" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 676c8810d0a58ac61b4afab610fff14f14a9e108 [INFO] testing zaeleus/noodles-count-features against beta-2021-01-01 for beta-1.50-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fzaeleus%2Fnoodles-count-features" "/workspace/builds/worker-4/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/zaeleus/noodles-count-features on toolchain beta-2021-01-01 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] finished tweaking git repo https://github.com/zaeleus/noodles-count-features [INFO] tweaked toml for git repo https://github.com/zaeleus/noodles-count-features written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate git repo https://github.com/zaeleus/noodles-count-features already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/zaeleus/interval-tree.git` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded git-testament v0.1.9 [INFO] [stderr] Downloaded git-testament-derive v0.1.10 [INFO] [stderr] Downloaded syn v1.0.57 [INFO] [stderr] Downloaded tokio v1.0.1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 1ac3ad2cb8fec8025c95517ebf7634ac2a9e14e654dba604c09ad238f93ca20b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1ac3ad2cb8fec8025c95517ebf7634ac2a9e14e654dba604c09ad238f93ca20b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1ac3ad2cb8fec8025c95517ebf7634ac2a9e14e654dba604c09ad238f93ca20b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1ac3ad2cb8fec8025c95517ebf7634ac2a9e14e654dba604c09ad238f93ca20b", kill_on_drop: false }` [INFO] [stdout] 1ac3ad2cb8fec8025c95517ebf7634ac2a9e14e654dba604c09ad238f93ca20b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4b784de606f5d379c2443335b2e25862b7543f12cf1e4848b184b30ff1da98fd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "4b784de606f5d379c2443335b2e25862b7543f12cf1e4848b184b30ff1da98fd", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.57 [INFO] [stderr] Compiling bit-vec v0.6.3 [INFO] [stderr] Compiling noodles-gff v0.1.0 (https://github.com/zaeleus/noodles.git?rev=6902ca810a844efd9f7e9845a79b31b14d4c7b21#6902ca81) [INFO] [stderr] Compiling interval-tree v0.2.0 (https://github.com/zaeleus/interval-tree.git?rev=e303d7254d53de5c418d6079d4b66c30c10958d4#e303d725) [INFO] [stderr] Compiling tokio v1.0.1 [INFO] [stderr] Compiling noodles-bgzf v0.1.0 (https://github.com/zaeleus/noodles.git?rev=6902ca810a844efd9f7e9845a79b31b14d4c7b21#6902ca81) [INFO] [stderr] Compiling regex v1.4.2 [INFO] [stderr] Compiling noodles-sam v0.1.0 (https://github.com/zaeleus/noodles.git?rev=6902ca810a844efd9f7e9845a79b31b14d4c7b21#6902ca81) [INFO] [stderr] Compiling env_logger v0.8.2 [INFO] [stderr] Compiling noodles v0.1.0 (https://github.com/zaeleus/noodles.git?rev=6902ca810a844efd9f7e9845a79b31b14d4c7b21#6902ca81) [INFO] [stderr] Compiling noodles-bam v0.1.0 (https://github.com/zaeleus/noodles.git?rev=6902ca810a844efd9f7e9845a79b31b14d4c7b21#6902ca81) [INFO] [stderr] Compiling git-testament-derive v0.1.10 [INFO] [stderr] Compiling git-testament v0.1.9 [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 46.80s [INFO] running `Command { std: "docker" "inspect" "4b784de606f5d379c2443335b2e25862b7543f12cf1e4848b184b30ff1da98fd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4b784de606f5d379c2443335b2e25862b7543f12cf1e4848b184b30ff1da98fd", kill_on_drop: false }` [INFO] [stdout] 4b784de606f5d379c2443335b2e25862b7543f12cf1e4848b184b30ff1da98fd [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 5d169c6be97cd010839bf2ae81019c22a1fd73468dc8589bca13e97045a57a1c [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "5d169c6be97cd010839bf2ae81019c22a1fd73468dc8589bca13e97045a57a1c", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling noodles-squab v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 4.34s [INFO] running `Command { std: "docker" "inspect" "5d169c6be97cd010839bf2ae81019c22a1fd73468dc8589bca13e97045a57a1c", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "5d169c6be97cd010839bf2ae81019c22a1fd73468dc8589bca13e97045a57a1c", kill_on_drop: false }` [INFO] [stdout] 5d169c6be97cd010839bf2ae81019c22a1fd73468dc8589bca13e97045a57a1c [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 52d66ede615e759c98c033dd75c8c389ed7875f23041f61116feee956d39a6c6 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "52d66ede615e759c98c033dd75c8c389ed7875f23041f61116feee956d39a6c6", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.37s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/noodles_squab-922776d593e2f51d [INFO] [stdout] [INFO] [stdout] running 27 tests [INFO] [stdout] test commands::tests::test_from_str ... ok [INFO] [stdout] test count::context::tests::test_add ... ok [INFO] [stdout] test count::context::tests::test_add_event ... ok [INFO] [stdout] test count::writer::tests::test_write_counts ... ok [INFO] [stdout] test count::reader::tests::test_read_counts ... ok [INFO] [stdout] test feature::tests::test_is_empty ... ok [INFO] [stdout] test feature::tests::test_end ... ok [INFO] [stdout] test count::tests::test_get_reference ... ok [INFO] [stdout] test count::writer::tests::test_write_stats ... ok [INFO] [stdout] test normalization::method::tests::test_from_str ... ok [INFO] [stdout] test normalization::tests::test_merge_features ... ok [INFO] [stdout] test normalization::writer::tests::test_write_values ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms_with_missing_feature ... ok [INFO] [stdout] test normalization::tests::test_sum_nonoverlapping_feature_lengths ... ok [INFO] [stdout] test match_intervals::tests::test_next ... ok [INFO] [stdout] test feature::tests::test_reference_sequence_name ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms_with_missing_feature ... ok [INFO] [stdout] test feature::tests::test_strand ... ok [INFO] [stdout] test normalization::fpkm::tests::test_calculate_fpkms ... ok [INFO] [stdout] test normalization::tpm::tests::test_calculate_tpms ... ok [INFO] [stdout] test feature::tests::test_len ... ok [INFO] [stdout] test feature::tests::test_start ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_try_from_flag ... ok [INFO] [stdout] test record_pairs::pair_position::tests::test_mate ... ok [INFO] [stdout] test record_pairs::tests::test_mate_key ... ok [INFO] [stdout] test record_pairs::tests::test_key ... ok [INFO] [stderr] Running /opt/rustwide/target/debug/deps/noodles_squab-0430ad491440dffd [INFO] [stdout] test tests::test_read_features ... ok [INFO] [stderr] Doc-tests noodles-squab [INFO] [stdout] [INFO] [stdout] test result: ok. 27 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "52d66ede615e759c98c033dd75c8c389ed7875f23041f61116feee956d39a6c6", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "52d66ede615e759c98c033dd75c8c389ed7875f23041f61116feee956d39a6c6", kill_on_drop: false }` [INFO] [stdout] 52d66ede615e759c98c033dd75c8c389ed7875f23041f61116feee956d39a6c6