[INFO] cloning repository https://github.com/esrice/trio_binning
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/esrice/trio_binning" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b253f856c7979414f2a8346270715cb73779ccad
[INFO] testing esrice/trio_binning against beta-2021-01-01 for beta-1.50-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fesrice%2Ftrio_binning" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/esrice/trio_binning on toolchain beta-2021-01-01
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/esrice/trio_binning
[INFO] finished tweaking git repo https://github.com/esrice/trio_binning
[INFO] tweaked toml for git repo https://github.com/esrice/trio_binning written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate git repo https://github.com/esrice/trio_binning already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating git repository `https://github.com/rust-bio/rust-htslib.git`
[INFO] [stderr]     Updating git submodule `https://github.com/samtools/htslib.git`
[INFO] [stderr]     Updating git repository `https://github.com/alexcrichton/bzip2-rs.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded env_logger v0.5.12
[INFO] [stderr]   Downloaded termcolor v1.0.1
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded aho-corasick v0.6.6
[INFO] [stderr]   Downloaded version_check v0.1.4
[INFO] [stderr]   Downloaded crossbeam-channel v0.2.4
[INFO] [stderr]   Downloaded linear-map v1.2.0
[INFO] [stderr]   Downloaded serde v1.0.72
[INFO] [stderr]   Downloaded log v0.4.4
[INFO] [stderr]   Downloaded proc-macro2 v0.3.5
[INFO] [stderr]   Downloaded itertools v0.6.5
[INFO] [stderr]   Downloaded slice-deque v0.1.11
[INFO] [stderr]   Downloaded serde_derive v1.0.72
[INFO] [stderr]   Downloaded cc v1.0.18
[INFO] [stderr]   Downloaded bindgen v0.36.1
[INFO] [stderr]   Downloaded wincolor v1.0.0
[INFO] [stderr]   Downloaded mach v0.2.2
[INFO] [stderr]   Downloaded fs-utils v1.1.0
[INFO] [stderr]   Downloaded regex v1.0.2
[INFO] [stderr]   Downloaded parking_lot v0.6.3
[INFO] [stderr]   Downloaded proc-macro2 v0.4.13
[INFO] [stderr]   Downloaded ieee754 v0.2.2
[INFO] [stderr]   Downloaded lzma-sys v0.1.11
[INFO] [stderr]   Downloaded bio-types v0.2.0
[INFO] [stderr]   Downloaded buf_redux v0.7.1
[INFO] [stderr]   Downloaded seq_io v0.3.0
[INFO] [stderr]   Downloaded clang-sys v0.22.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f3112a9ac4c03f79ae0656b7f1d09b2acb619cdee8c4a3e0ec6b3e54e4277110
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f3112a9ac4c03f79ae0656b7f1d09b2acb619cdee8c4a3e0ec6b3e54e4277110", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f3112a9ac4c03f79ae0656b7f1d09b2acb619cdee8c4a3e0ec6b3e54e4277110", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f3112a9ac4c03f79ae0656b7f1d09b2acb619cdee8c4a3e0ec6b3e54e4277110", kill_on_drop: false }`
[INFO] [stdout] f3112a9ac4c03f79ae0656b7f1d09b2acb619cdee8c4a3e0ec6b3e54e4277110
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 644d52236f21766e17aca9f6d3cba53d2594d33303dd62f3615b8ebf5869c58e
[INFO] running `Command { std: "docker" "start" "-a" "644d52236f21766e17aca9f6d3cba53d2594d33303dd62f3615b8ebf5869c58e", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling cc v1.0.18
[INFO] [stderr]    Compiling version_check v0.1.4
[INFO] [stderr]    Compiling proc-macro2 v0.4.13
[INFO] [stderr]    Compiling regex v1.0.2
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling serde v1.0.72
[INFO] [stderr]    Compiling termcolor v1.0.1
[INFO] [stderr]    Compiling peeking_take_while v0.1.2
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.2
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling regex-syntax v0.6.2
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling log v0.4.4
[INFO] [stderr]    Compiling regex-syntax v0.5.6
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling miniz_oxide v0.3.6
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling crc32fast v1.2.0
[INFO] [stderr]    Compiling url v1.7.1
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]    Compiling lazy_static v1.1.0
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling lzma-sys v0.1.11
[INFO] [stderr]    Compiling bzip2-sys v0.1.6 (https://github.com/alexcrichton/bzip2-rs.git#54aef435)
[INFO] [stderr]    Compiling libz-sys v1.0.25
[INFO] [stderr]    Compiling syn v0.14.9
[INFO] [stderr]    Compiling thread_local v0.3.6
[INFO] [stderr]    Compiling crossbeam-epoch v0.5.2
[INFO] [stderr]    Compiling memchr v2.0.1
[INFO] [stderr]    Compiling atty v0.2.11
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling term_size v0.3.1
[INFO] [stderr]    Compiling rand v0.4.3
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling rand v0.5.5
[INFO] [stderr]    Compiling slice-deque v0.1.11
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling aho-corasick v0.6.6
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling crossbeam-deque v0.5.2
[INFO] [stderr]    Compiling buf_redux v0.7.1
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling parking_lot_core v0.2.14
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling parking_lot v0.6.3
[INFO] [stderr]    Compiling crossbeam-channel v0.2.4
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling crossbeam v0.4.1
[INFO] [stderr]    Compiling env_logger v0.5.12
[INFO] [stderr]    Compiling serde_derive v1.0.72
[INFO] [stderr]    Compiling bio-types v0.2.0
[INFO] [stderr]    Compiling seq_io v0.3.0
[INFO] [stderr]    Compiling rust-htslib v0.21.1-alpha.0 (https://github.com/rust-bio/rust-htslib.git?rev=1f9736e#1f9736ef)
[INFO] [stderr]    Compiling trio_binning v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 13s
[INFO] running `Command { std: "docker" "inspect" "644d52236f21766e17aca9f6d3cba53d2594d33303dd62f3615b8ebf5869c58e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "644d52236f21766e17aca9f6d3cba53d2594d33303dd62f3615b8ebf5869c58e", kill_on_drop: false }`
[INFO] [stdout] 644d52236f21766e17aca9f6d3cba53d2594d33303dd62f3615b8ebf5869c58e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 8472ed3f4487b44c42743056953a36831b0c4b857c3a1cbd118a34a9523f0642
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "8472ed3f4487b44c42743056953a36831b0c4b857c3a1cbd118a34a9523f0642", kill_on_drop: false }`
[INFO] [stderr]    Compiling trio_binning v0.2.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 4.04s
[INFO] running `Command { std: "docker" "inspect" "8472ed3f4487b44c42743056953a36831b0c4b857c3a1cbd118a34a9523f0642", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8472ed3f4487b44c42743056953a36831b0c4b857c3a1cbd118a34a9523f0642", kill_on_drop: false }`
[INFO] [stdout] 8472ed3f4487b44c42743056953a36831b0c4b857c3a1cbd118a34a9523f0642
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 05184b522491ca69e38d705f17fb56e72a06a054b323e0ccb80826996dc3e19e
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "05184b522491ca69e38d705f17fb56e72a06a054b323e0ccb80826996dc3e19e", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.14s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/trio_binning-f61bb17f657f0e2a
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test kmer::tests::canonical ... ok
[INFO] [stdout] test kmer::tests::revcomp_reversible ... ok
[INFO] [stdout] test classify::tests::test_count ... ok
[INFO] [stdout] test kmer::tests::bits_reversible ... ok
[INFO] [stdout] test kmer::tests::invalid_revcomp_base ... ok
[INFO] [stdout] test kmer::tests::too_long_bits_to_kmer ... ok
[INFO] [stdout] test kmer::tests::too_long_kmer_to_bits ... ok
[INFO] [stdout] test kmer::tests::invalid_kmer_base ... ok
[INFO] [stdout] test kmer::tests::invalid_canonical ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 9 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.12s
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/classify_by_alignment-e3eb5601a8d18a63
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/classify_by_kmers-0044cf3f94cf283f
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests trio_binning
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/classify.rs - classify::open_writer (line 159) ... ignored
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "05184b522491ca69e38d705f17fb56e72a06a054b323e0ccb80826996dc3e19e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "05184b522491ca69e38d705f17fb56e72a06a054b323e0ccb80826996dc3e19e", kill_on_drop: false }`
[INFO] [stdout] 05184b522491ca69e38d705f17fb56e72a06a054b323e0ccb80826996dc3e19e