[INFO] cloning repository https://github.com/HopedWall/GFAtoVCF
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/HopedWall/GFAtoVCF" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 0515bb676b975bb37d18ccafcd57bb55c1239249
[INFO] testing HopedWall/GFAtoVCF against beta-2021-01-01 for beta-1.50-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FHopedWall%2FGFAtoVCF" "/workspace/builds/worker-9/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-9/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/HopedWall/GFAtoVCF on toolchain beta-2021-01-01
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/HopedWall/GFAtoVCF
[INFO] finished tweaking git repo https://github.com/HopedWall/GFAtoVCF
[INFO] tweaked toml for git repo https://github.com/HopedWall/GFAtoVCF written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate git repo https://github.com/HopedWall/GFAtoVCF already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2021-01-01" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded json v0.12.4
[INFO] [stderr]   Downloaded priority-queue v1.0.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 3404b6e7e6b3ae95546da1d3159aa02ac57fd450ab30b863b72ad9d37fda5d10
[INFO] running `Command { std: "docker" "start" "-a" "3404b6e7e6b3ae95546da1d3159aa02ac57fd450ab30b863b72ad9d37fda5d10", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3404b6e7e6b3ae95546da1d3159aa02ac57fd450ab30b863b72ad9d37fda5d10", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3404b6e7e6b3ae95546da1d3159aa02ac57fd450ab30b863b72ad9d37fda5d10", kill_on_drop: false }`
[INFO] [stdout] 3404b6e7e6b3ae95546da1d3159aa02ac57fd450ab30b863b72ad9d37fda5d10
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] e6b7e7fa2c5e2b919fbe9f79de1169ce845c7c168ed4bb0e754cd3f4faa560cf
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "e6b7e7fa2c5e2b919fbe9f79de1169ce845c7c168ed4bb0e754cd3f4faa560cf", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling lexical-core v0.7.4
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling arrayvec v0.5.1
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling json v0.12.4
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling indexmap v1.4.0
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling priority-queue v1.0.0
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling time v0.1.43
[INFO] [stderr]    Compiling clap v2.33.1
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling chrono v0.4.11
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling gfa v0.2.3
[INFO] [stderr]    Compiling handlegraph v0.2.0
[INFO] [stderr]    Compiling gfa_to_vcf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 49.49s
[INFO] running `Command { std: "docker" "inspect" "e6b7e7fa2c5e2b919fbe9f79de1169ce845c7c168ed4bb0e754cd3f4faa560cf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e6b7e7fa2c5e2b919fbe9f79de1169ce845c7c168ed4bb0e754cd3f4faa560cf", kill_on_drop: false }`
[INFO] [stdout] e6b7e7fa2c5e2b919fbe9f79de1169ce845c7c168ed4bb0e754cd3f4faa560cf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] f2b4b6cbadf08f92055ffcf7d1191c96a63103dadbedfd23ed6ca5e3c24f9a28
[INFO] running `Command { std: "docker" "start" "-a" "f2b4b6cbadf08f92055ffcf7d1191c96a63103dadbedfd23ed6ca5e3c24f9a28", kill_on_drop: false }`
[INFO] [stderr]    Compiling gfa_to_vcf v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 4.82s
[INFO] running `Command { std: "docker" "inspect" "f2b4b6cbadf08f92055ffcf7d1191c96a63103dadbedfd23ed6ca5e3c24f9a28", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f2b4b6cbadf08f92055ffcf7d1191c96a63103dadbedfd23ed6ca5e3c24f9a28", kill_on_drop: false }`
[INFO] [stdout] f2b4b6cbadf08f92055ffcf7d1191c96a63103dadbedfd23ed6ca5e3c24f9a28
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2021-01-01" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 38f7babbf1fb7d2f52a37fd40f6748b3d31995d90056ca647825b06d5fd2bd46
[INFO] running `Command { std: "docker" "start" "-a" "38f7babbf1fb7d2f52a37fd40f6748b3d31995d90056ca647825b06d5fd2bd46", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.06s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/gfa_to_vcf-1431d7e74c2840c5
[INFO] [stdout] 
[INFO] [stdout] running 19 tests
[INFO] [stdout] test bubble_detection::tests::find_bfs_paths_2 ... ok
[INFO] [stdout] test bubble_detection::tests::find_bfs_1 ... ok
[INFO] [stdout] test bubble_detection::tests::find_bubbles_2 ... ok
[INFO] [stdout] test bubble_detection::tests::find_bubbles_1 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_1 ... ok
[INFO] [stdout] test bubble_detection::tests::test_bfs_distances ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_2 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_4 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_3 ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_4_alt ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_5_alt ... ok
[INFO] [stdout] test variant_identification::tests::whole_script_2 ... ok
[INFO] [stdout] test bubble_detection::tests::test_bfs ... ok
[INFO] [stdout] test bubble_detection::tests::test_dist_to_num_nodes ... ok
[INFO] [stdout] test bubble_detection::tests::test_path_to_steps ... ok
[INFO] [stdout] test variant_identification::tests::find_all_paths_5 ... ok
[INFO] [stdout] test variant_identification::tests::whole_script_1 ... ok
[INFO] [stdout] test variant_identification::tests::test_variant_detection ... ok
[INFO] [stdout] test bubble_detection::tests::test_bubble_detection ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 19 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "38f7babbf1fb7d2f52a37fd40f6748b3d31995d90056ca647825b06d5fd2bd46", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "38f7babbf1fb7d2f52a37fd40f6748b3d31995d90056ca647825b06d5fd2bd46", kill_on_drop: false }`
[INFO] [stdout] 38f7babbf1fb7d2f52a37fd40f6748b3d31995d90056ca647825b06d5fd2bd46