[INFO] fetching crate syntaxdot-transformers 0.2.0... [INFO] testing syntaxdot-transformers-0.2.0 against 1.49.0 for beta-1.50-1 [INFO] extracting crate syntaxdot-transformers 0.2.0 into /workspace/builds/worker-8/source [INFO] validating manifest of crates.io crate syntaxdot-transformers 0.2.0 on toolchain 1.49.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate syntaxdot-transformers 0.2.0 [INFO] finished tweaking crates.io crate syntaxdot-transformers 0.2.0 [INFO] tweaked toml for crates.io crate syntaxdot-transformers 0.2.0 written to /workspace/builds/worker-8/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f8c82ef763e60c2eb7d7667fe1c904118ea2b9ca0f8b73bdd0fe38b4f556c40a [INFO] running `Command { std: "docker" "start" "-a" "f8c82ef763e60c2eb7d7667fe1c904118ea2b9ca0f8b73bdd0fe38b4f556c40a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "f8c82ef763e60c2eb7d7667fe1c904118ea2b9ca0f8b73bdd0fe38b4f556c40a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f8c82ef763e60c2eb7d7667fe1c904118ea2b9ca0f8b73bdd0fe38b4f556c40a", kill_on_drop: false }` [INFO] [stdout] f8c82ef763e60c2eb7d7667fe1c904118ea2b9ca0f8b73bdd0fe38b4f556c40a [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 3593023519dca9d0286d13c474d5bb6bba9761a81fdaac304ee2eeea8f3628ef [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "3593023519dca9d0286d13c474d5bb6bba9761a81fdaac304ee2eeea8f3628ef", kill_on_drop: false }` [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling rawpointer v0.2.1 [INFO] [stderr] Compiling hdf5 v0.7.0 [INFO] [stderr] Compiling flate2 v1.0.14 [INFO] [stderr] Compiling parking_lot_core v0.7.2 [INFO] [stderr] Compiling hdf5-types v0.7.0 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling hdf5-sys v0.7.0 [INFO] [stderr] Compiling hdf5-derive v0.7.0 [INFO] [stderr] Compiling failure v0.1.8 [INFO] [stderr] Compiling matrixmultiply v0.2.4 [INFO] [stderr] Compiling parking_lot v0.10.2 [INFO] [stderr] Compiling zip v0.5.9 [INFO] [stderr] Compiling torch-sys v0.3.0 [INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-ccc0f91b63fe9c7e/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] Attempting to find HDF5 via pkg-config... [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=HDF5_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_PATH [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu [INFO] [stderr] cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55d8e4a1a5c0 - std::backtrace_rs::backtrace::libunwind::trace::h04d12fdcddff82aa [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55d8e4a1a5c0 - std::backtrace_rs::backtrace::trace_unsynchronized::h1459b974b6fbe5e1 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55d8e4a1a5c0 - std::sys_common::backtrace::_print_fmt::h9b8396a669123d95 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55d8e4a1a5c0 - ::fmt::he009dcaaa75eed60 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55d8e4a3947c - core::fmt::write::h77b4746b0dea1dd3 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55d8e4a17242 - std::io::Write::write_fmt::heb7e50902e98831c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/io/mod.rs:1518:15 [INFO] [stderr] 6: 0x55d8e4a1ca85 - std::sys_common::backtrace::_print::h2d880c9e69a21be9 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55d8e4a1ca85 - std::sys_common::backtrace::print::h5f02b1bb49f36879 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55d8e4a1ca85 - std::panicking::default_hook::{{closure}}::h658e288a7a809b29 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55d8e4a1c728 - std::panicking::default_hook::hb52d73f0da9a4bb8 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55d8e4a1d221 - std::panicking::rust_panic_with_hook::hfe7e1c684e3e6462 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x55d8e49093ee - std::panicking::begin_panic::{{closure}}::hea87162b4b823565 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:522:9 [INFO] [stderr] 12: 0x55d8e494a9c9 - std::sys_common::backtrace::__rust_end_short_backtrace::h5b9fa7413ad27774 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55d8e490931b - std::panicking::begin_panic::h511cb4b89dad4a3d [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:521:12 [INFO] [stderr] 14: 0x55d8e47f206b - build_script_build::LibrarySearcher::try_locate_hdf5_library::h84cea822c6f076f5 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13 [INFO] [stderr] 15: 0x55d8e47f38d3 - build_script_build::main::h1a08481e22d34d0d [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647:9 [INFO] [stderr] 16: 0x55d8e47f9fbb - core::ops::function::FnOnce::call_once::h5c904fd3f5ec86a3 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 17: 0x55d8e4800bae - std::sys_common::backtrace::__rust_begin_short_backtrace::hd455b0854706a31a [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 18: 0x55d8e47febd1 - std::rt::lang_start::{{closure}}::h9fc9091a6030c18e [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/rt.rs:66:18 [INFO] [stderr] 19: 0x55d8e4a1d647 - core::ops::function::impls:: for &F>::call_once::h57e2a071d427b24c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 20: 0x55d8e4a1d647 - std::panicking::try::do_call::h81cbbe0c3b30a28e [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:381:40 [INFO] [stderr] 21: 0x55d8e4a1d647 - std::panicking::try::hbeeb95b4e1f0a876 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:345:19 [INFO] [stderr] 22: 0x55d8e4a1d647 - std::panic::catch_unwind::h59c48ccb40a0bf20 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panic.rs:396:14 [INFO] [stderr] 23: 0x55d8e4a1d647 - std::rt::lang_start_internal::ha53ab63f88fee728 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/rt.rs:51:25 [INFO] [stderr] 24: 0x55d8e47feba7 - std::rt::lang_start::hf8a6b491b910ac6a [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/rt.rs:65:5 [INFO] [stderr] 25: 0x55d8e47f4f1a - main [INFO] [stderr] 26: 0x7f78e77290b3 - __libc_start_main [INFO] [stderr] 27: 0x55d8e47ed0be - _start [INFO] [stderr] 28: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "3593023519dca9d0286d13c474d5bb6bba9761a81fdaac304ee2eeea8f3628ef", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "3593023519dca9d0286d13c474d5bb6bba9761a81fdaac304ee2eeea8f3628ef", kill_on_drop: false }` [INFO] [stdout] 3593023519dca9d0286d13c474d5bb6bba9761a81fdaac304ee2eeea8f3628ef