[INFO] fetching crate perbase 0.6.3... [INFO] testing perbase-0.6.3 against 1.49.0 for beta-1.50-1 [INFO] extracting crate perbase 0.6.3 into /workspace/builds/worker-4/source [INFO] validating manifest of crates.io crate perbase 0.6.3 on toolchain 1.49.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate perbase 0.6.3 [INFO] finished tweaking crates.io crate perbase 0.6.3 [INFO] tweaked toml for crates.io crate perbase 0.6.3 written to /workspace/builds/worker-4/source/Cargo.toml [INFO] crate crates.io crate perbase 0.6.3 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] a222c5feff84dc85276da3135fc834cef46021ee67f279e8a12d47cf57a8a0a1 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "a222c5feff84dc85276da3135fc834cef46021ee67f279e8a12d47cf57a8a0a1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "a222c5feff84dc85276da3135fc834cef46021ee67f279e8a12d47cf57a8a0a1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a222c5feff84dc85276da3135fc834cef46021ee67f279e8a12d47cf57a8a0a1", kill_on_drop: false }` [INFO] [stdout] a222c5feff84dc85276da3135fc834cef46021ee67f279e8a12d47cf57a8a0a1 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] f010200794ab9612dfa87b154f4fd20242f0923c561917aefdb9faf0374d47d8 [INFO] running `Command { std: "docker" "start" "-a" "f010200794ab9612dfa87b154f4fd20242f0923c561917aefdb9faf0374d47d8", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.48 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Compiling serde v1.0.117 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling unicode-segmentation v1.7.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Compiling rayon-core v1.9.0 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling anyhow v1.0.34 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling bytecount v0.6.1 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling static_assertions v1.1.0 [INFO] [stderr] Compiling lru_time_cache v0.11.2 [INFO] [stderr] Compiling crossbeam-utils v0.8.0 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling rayon v1.5.0 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling matrixmultiply v0.2.3 [INFO] [stderr] Compiling itertools v0.9.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling ordered-float v1.1.0 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling rust-lapper v0.5.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling ndarray v0.13.1 [INFO] [stderr] Compiling cc v1.0.63 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling openssl-src v111.12.0+1.1.1h [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling openssl-sys v0.9.58 [INFO] [stderr] Compiling curl-sys v0.4.38+curl-7.73.0 [INFO] [stderr] Compiling bzip2-sys v0.1.9+1.0.8 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] Compiling hts-sys v1.11.1-fix1 [INFO] [stderr] Compiling crossbeam-epoch v0.9.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling crossbeam-deque v0.8.0 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling snafu-derive v0.6.9 [INFO] [stderr] Compiling thiserror-impl v1.0.22 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling structopt-derive v0.4.13 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling enum-map v0.6.4 [INFO] [stderr] Compiling thiserror v1.0.22 [INFO] [stderr] Compiling snafu v0.6.9 [INFO] [stderr] Compiling bstr v0.2.14 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling multimap v0.8.2 [INFO] [stderr] Compiling smartstring v0.2.5 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling globset v0.4.6 [INFO] [stderr] Compiling csv v1.1.4 [INFO] [stderr] Compiling grep-cli v0.1.5 [INFO] [stderr] Compiling rust-htslib v0.35.2 [INFO] [stderr] Compiling structopt v0.3.20 [INFO] [stderr] Compiling perbase v0.6.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 4m 06s [INFO] running `Command { std: "docker" "inspect" "f010200794ab9612dfa87b154f4fd20242f0923c561917aefdb9faf0374d47d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f010200794ab9612dfa87b154f4fd20242f0923c561917aefdb9faf0374d47d8", kill_on_drop: false }` [INFO] [stdout] f010200794ab9612dfa87b154f4fd20242f0923c561917aefdb9faf0374d47d8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 42b771bea5868551b2f19348e13b2518c547d90a1cfe4725842269d59555b781 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "42b771bea5868551b2f19348e13b2518c547d90a1cfe4725842269d59555b781", kill_on_drop: false }` [INFO] [stderr] Compiling wait-timeout v0.2.0 [INFO] [stderr] Compiling rstest v0.6.4 [INFO] [stderr] Compiling rand_xorshift v0.2.0 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling rusty-fork v0.3.0 [INFO] [stderr] Compiling proptest v0.10.1 [INFO] [stderr] Compiling perbase v0.6.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 44.30s [INFO] running `Command { std: "docker" "inspect" "42b771bea5868551b2f19348e13b2518c547d90a1cfe4725842269d59555b781", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "42b771bea5868551b2f19348e13b2518c547d90a1cfe4725842269d59555b781", kill_on_drop: false }` [INFO] [stdout] 42b771bea5868551b2f19348e13b2518c547d90a1cfe4725842269d59555b781 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 79101cde43bf33abd5906c8a427f2d2109be2487049d0fdd7d6ca2570fb11d90 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "79101cde43bf33abd5906c8a427f2d2109be2487049d0fdd7d6ca2570fb11d90", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.16s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/perbase_lib-f0845e26e734c0f9 [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test par_granges::test::interval_set ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Running /opt/rustwide/target/debug/deps/perbase-d11e018ae508307e [INFO] [stdout] [INFO] [stdout] running 56 tests [INFO] [stdout] test commands::base_depth::tests::check_depths_refskips::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_mate_detection::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_mate_detection::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_filters::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_refskips::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_start::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_deletions::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_refskips::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_filters::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_insertions::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_insertions::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_refskips::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_start::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_deletions::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_insertions::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_deletions::case_2_mate_aware ... ok [INFO] [stdout] test commands::base_depth::tests::check_depths_deletions::case_1_mate_unaware ... ok [INFO] [stdout] test commands::base_depth::tests::check_insertions::case_2_mate_aware ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_insertions::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_chunk_ends::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_chunk_ends::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_deletions::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_insertions::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_deletions::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_deletions::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_insertions::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_chunk_ends::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_chunk_ends::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_insertions::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_deletions::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_filters::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_refskips::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_refskips::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_refskips::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_filters::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_ranges::case_2_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_filters::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_depths_refskips::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_mate_detection_vanilla::case_2_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_mate_detection_fast::case_1_fast_mode ... ok [INFO] [stdout] test commands::only_depth::tests::check_mate_detection_fast::case_2_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_ranges::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_mate_detection_vanilla::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::test_can_parse::fast_mode_1::mate_fix_2 ... ok [INFO] [stdout] test commands::only_depth::tests::check_ranges::case_1_vanilla ... ok [INFO] [stdout] test commands::only_depth::tests::check_filters::case_4_fast_mode_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::check_ranges::case_3_vanilla_mate_fix ... ok [INFO] [stdout] test commands::only_depth::tests::test_can_parse::fast_mode_1::mate_fix_1 ... ok [INFO] [stdout] test commands::only_depth::tests::test_can_parse::fast_mode_2::mate_fix_2 ... ok [INFO] [stdout] test commands::only_depth::tests::test_can_parse::fast_mode_2::mate_fix_1 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 56 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] Doc-tests perbase_lib [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test src/lib/mod.rs - (line 14) ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "79101cde43bf33abd5906c8a427f2d2109be2487049d0fdd7d6ca2570fb11d90", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "79101cde43bf33abd5906c8a427f2d2109be2487049d0fdd7d6ca2570fb11d90", kill_on_drop: false }` [INFO] [stdout] 79101cde43bf33abd5906c8a427f2d2109be2487049d0fdd7d6ca2570fb11d90