[INFO] fetching crate openmm-sys 7.4.1... [INFO] testing openmm-sys-7.4.1 against 1.49.0 for beta-1.50-1 [INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-13/source [INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain 1.49.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate openmm-sys 7.4.1 [INFO] finished tweaking crates.io crate openmm-sys 7.4.1 [INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-13/source/Cargo.toml [INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 10bee3bd9d06e789db918404adcfbf12906ae7bc7b716a944a20a1c4095f877b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "10bee3bd9d06e789db918404adcfbf12906ae7bc7b716a944a20a1c4095f877b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "10bee3bd9d06e789db918404adcfbf12906ae7bc7b716a944a20a1c4095f877b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "10bee3bd9d06e789db918404adcfbf12906ae7bc7b716a944a20a1c4095f877b", kill_on_drop: false }` [INFO] [stdout] 10bee3bd9d06e789db918404adcfbf12906ae7bc7b716a944a20a1c4095f877b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 44389891a9f4a37d65e436a71f6541ad8571c2a08936c71958a42e0d561b9964 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "44389891a9f4a37d65e436a71f6541ad8571c2a08936c71958a42e0d561b9964", kill_on_drop: false }` [INFO] [stderr] Compiling cc v1.0.59 [INFO] [stderr] Compiling cmake v0.1.44 [INFO] [stderr] Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir) [INFO] [stderr] The following warnings were emitted during compilation: [INFO] [stderr] [INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] [INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-9d1cb2b512073ef6/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library. [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-505689c799094514/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release" [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/openmm-sys-505689c799094514/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] fatal: not a git repository (or any parent up to mount point /opt/rustwide) [INFO] [stderr] Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set). [INFO] [stderr] CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY): [INFO] [stderr] The OLD behavior for policy CMP0042 will be removed from a future version [INFO] [stderr] of CMake. [INFO] [stderr] [INFO] [stderr] The cmake-policies(7) manual explains that the OLD behaviors of all [INFO] [stderr] policies are deprecated and that a policy should be set to OLD only under [INFO] [stderr] specific short-term circumstances. Projects should be ported to the NEW [INFO] [stderr] behavior and not rely on setting a policy to OLD. [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message): [INFO] [stderr] Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) [INFO] [stderr] Call Stack (most recent call first): [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE) [INFO] [stderr] /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args) [INFO] [stderr] wrappers/CMakeLists.txt:1 (find_package) [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x558069a3e060 - std::backtrace_rs::backtrace::libunwind::trace::h04d12fdcddff82aa [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x558069a3e060 - std::backtrace_rs::backtrace::trace_unsynchronized::h1459b974b6fbe5e1 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x558069a3e060 - std::sys_common::backtrace::_print_fmt::h9b8396a669123d95 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x558069a3e060 - ::fmt::he009dcaaa75eed60 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x558069a5decc - core::fmt::write::h77b4746b0dea1dd3 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x558069a3a622 - std::io::Write::write_fmt::heb7e50902e98831c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/io/mod.rs:1518:15 [INFO] [stderr] 6: 0x558069a409e5 - std::sys_common::backtrace::_print::h2d880c9e69a21be9 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x558069a409e5 - std::sys_common::backtrace::print::h5f02b1bb49f36879 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x558069a409e5 - std::panicking::default_hook::{{closure}}::h658e288a7a809b29 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x558069a40688 - std::panicking::default_hook::hb52d73f0da9a4bb8 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x558069a41181 - std::panicking::rust_panic_with_hook::hfe7e1c684e3e6462 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x558069a40cc7 - std::panicking::begin_panic_handler::{{closure}}::h42939e004b32765c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:499:13 [INFO] [stderr] 12: 0x558069a3e51c - std::sys_common::backtrace::__rust_end_short_backtrace::h9d2070f7bf9fd56c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x558069a40c29 - rust_begin_unwind [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:495:5 [INFO] [stderr] 14: 0x558069a40bdb - std::panicking::begin_panic_fmt::h4a7e15187eac098d [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:437:5 [INFO] [stderr] 15: 0x5580699d361e - cmake::fail::h581b5d96ca6fcd03 [INFO] [stderr] 16: 0x5580699d2f9c - cmake::run::hf507db7546465c28 [INFO] [stderr] 17: 0x5580699cecab - cmake::Config::build::h66dc9cc0324ff3f3 [INFO] [stderr] 18: 0x5580699c990c - build_script_build::main::h065920bbccc69063 [INFO] [stderr] 19: 0x5580699ca2d3 - core::ops::function::FnOnce::call_once::h8b2db75b81b9ebe4 [INFO] [stderr] 20: 0x5580699ca239 - std::sys_common::backtrace::__rust_begin_short_backtrace::h514e2c6f723db49f [INFO] [stderr] 21: 0x5580699cbe29 - std::rt::lang_start::{{closure}}::hd3f0d9db1045ba25 [INFO] [stderr] 22: 0x558069a415a7 - core::ops::function::impls:: for &F>::call_once::h57e2a071d427b24c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x558069a415a7 - std::panicking::try::do_call::h81cbbe0c3b30a28e [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:381:40 [INFO] [stderr] 24: 0x558069a415a7 - std::panicking::try::hbeeb95b4e1f0a876 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:345:19 [INFO] [stderr] 25: 0x558069a415a7 - std::panic::catch_unwind::h59c48ccb40a0bf20 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panic.rs:396:14 [INFO] [stderr] 26: 0x558069a415a7 - std::rt::lang_start_internal::ha53ab63f88fee728 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x5580699cbe08 - std::rt::lang_start::ha8a0fbbd345b0aa3 [INFO] [stderr] 28: 0x5580699c9acb - main [INFO] [stderr] 29: 0x7f8a32b5f0b3 - __libc_start_main [INFO] [stderr] 30: 0x5580699c60ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "44389891a9f4a37d65e436a71f6541ad8571c2a08936c71958a42e0d561b9964", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "44389891a9f4a37d65e436a71f6541ad8571c2a08936c71958a42e0d561b9964", kill_on_drop: false }` [INFO] [stdout] 44389891a9f4a37d65e436a71f6541ad8571c2a08936c71958a42e0d561b9964