[INFO] fetching crate flann-sys 0.1.0... [INFO] testing flann-sys-0.1.0 against 1.49.0 for beta-1.50-1 [INFO] extracting crate flann-sys 0.1.0 into /workspace/builds/worker-6/source [INFO] validating manifest of crates.io crate flann-sys 0.1.0 on toolchain 1.49.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking crates.io crate flann-sys 0.1.0 [INFO] finished tweaking crates.io crate flann-sys 0.1.0 [INFO] tweaked toml for crates.io crate flann-sys 0.1.0 written to /workspace/builds/worker-6/source/Cargo.toml [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 758aca1d8033e7b6cdcc2262c5a897115547ce260c254bdf5ad9d941d682d62b [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "758aca1d8033e7b6cdcc2262c5a897115547ce260c254bdf5ad9d941d682d62b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "758aca1d8033e7b6cdcc2262c5a897115547ce260c254bdf5ad9d941d682d62b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "758aca1d8033e7b6cdcc2262c5a897115547ce260c254bdf5ad9d941d682d62b", kill_on_drop: false }` [INFO] [stdout] 758aca1d8033e7b6cdcc2262c5a897115547ce260c254bdf5ad9d941d682d62b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 9711899ba6a78d9cf3ef81136616fa0c7ada5eabc4684bdee1d23065b9f16b1a [INFO] running `Command { std: "docker" "start" "-a" "9711899ba6a78d9cf3ef81136616fa0c7ada5eabc4684bdee1d23065b9f16b1a", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.81 [INFO] [stderr] Compiling ucd-util v0.1.8 [INFO] [stderr] Compiling libloading v0.4.3 [INFO] [stderr] Compiling regex v0.2.11 [INFO] [stderr] Compiling utf8-ranges v1.0.4 [INFO] [stderr] Compiling bindgen v0.32.3 [INFO] [stderr] Compiling peeking_take_while v0.1.2 [INFO] [stderr] Compiling clang-sys v0.21.2 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling proc-macro2 v0.2.3 [INFO] [stderr] Compiling aho-corasick v0.6.10 [INFO] [stderr] Compiling regex-syntax v0.5.6 [INFO] [stderr] Compiling quote v0.4.2 [INFO] [stderr] Compiling memchr v1.0.2 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling which v1.0.5 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling nom v3.2.1 [INFO] [stderr] Compiling cexpr v0.2.3 [INFO] [stderr] Compiling env_logger v0.4.3 [INFO] [stderr] Compiling flann-sys v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] error: failed to run custom build command for `flann-sys v0.1.0 (/opt/rustwide/workdir)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/flann-sys-d198aab3eb7ec576/build-script-build` (exit code: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rustc-link-lib=gomp [INFO] [stderr] cargo:rustc-link-lib=stdc++ [INFO] [stderr] running: "cmake" "/opt/rustwide/workdir/flann" "-DBUILD_EXAMPLES=OFF" "-DBUILD_TESTS=OFF" "-DBUILD_DOC=OFF" "-DBUILD_PYTHON_BINDINGS=OFF" "-DBUILD_MATLAB_BINDINGS=OFF" "-DUSE_OPENMP=ON" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/flann-sys-9da9126a190c82d7/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Debug" [INFO] [stderr] -- The C compiler identification is GNU 9.3.0 [INFO] [stderr] -- The CXX compiler identification is GNU 9.3.0 [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc [INFO] [stderr] -- Check for working C compiler: /usr/bin/cc -- works [INFO] [stderr] -- Detecting C compiler ABI info [INFO] [stderr] -- Detecting C compiler ABI info - done [INFO] [stderr] -- Detecting C compile features [INFO] [stderr] -- Detecting C compile features - done [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ [INFO] [stderr] -- Check for working CXX compiler: /usr/bin/c++ -- works [INFO] [stderr] -- Detecting CXX compiler ABI info [INFO] [stderr] -- Detecting CXX compiler ABI info - done [INFO] [stderr] -- Detecting CXX compile features [INFO] [stderr] -- Detecting CXX compile features - done [INFO] [stderr] -- Found PythonInterp: /usr/bin/python (found version "2.7.18") [INFO] [stderr] -- Could NOT find HDF5 (missing: HDF5_LIBRARIES HDF5_INCLUDE_DIRS) (found version "") [INFO] [stderr] -- Could NOT find GTest (missing: GTEST_LIBRARY GTEST_INCLUDE_DIR GTEST_MAIN_LIBRARY) [INFO] [stderr] -- Found OpenMP_C: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP_CXX: -fopenmp (found version "4.5") [INFO] [stderr] -- Found OpenMP: TRUE (found version "4.5") [INFO] [stderr] -- Install prefix: /opt/rustwide/target/debug/build/flann-sys-9da9126a190c82d7/out [INFO] [stderr] -- Build type: Debug [INFO] [stderr] -- Building C bindings: ON [INFO] [stderr] -- Building examples: OFF [INFO] [stderr] -- Building tests: OFF [INFO] [stderr] -- Building documentation: OFF [INFO] [stderr] -- Building python bindings: OFF [INFO] [stderr] -- Building matlab bindings: OFF [INFO] [stderr] -- Building CUDA library: OFF [INFO] [stderr] -- Using OpenMP support: ON [INFO] [stderr] -- Using MPI support: OFF [INFO] [stderr] -- Configuring incomplete, errors occurred! [INFO] [stderr] See also "/opt/rustwide/target/debug/build/flann-sys-9da9126a190c82d7/out/build/CMakeFiles/CMakeOutput.log". [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] CMake Warning at CMakeLists.txt:78 (message): [INFO] [stderr] hdf5 library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Warning at CMakeLists.txt:117 (message): [INFO] [stderr] gtest library not found, some tests will not be run [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] CMake Error: Could not open file for write in copy operation /opt/rustwide/workdir/flann/src/cpp/flann/config.h.tmp [INFO] [stderr] CMake Error: : System Error: Read-only file system [INFO] [stderr] CMake Error at src/cpp/CMakeLists.txt:5 (configure_file): [INFO] [stderr] configure_file Problem configuring file [INFO] [stderr] [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at ' [INFO] [stderr] command did not execute successfully, got: exit code: 1 [INFO] [stderr] [INFO] [stderr] build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x55856c46f920 - std::backtrace_rs::backtrace::libunwind::trace::h04d12fdcddff82aa [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stderr] 1: 0x55856c46f920 - std::backtrace_rs::backtrace::trace_unsynchronized::h1459b974b6fbe5e1 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stderr] 2: 0x55856c46f920 - std::sys_common::backtrace::_print_fmt::h9b8396a669123d95 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stderr] 3: 0x55856c46f920 - ::fmt::he009dcaaa75eed60 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stderr] 4: 0x55856c49624c - core::fmt::write::h77b4746b0dea1dd3 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/fmt/mod.rs:1078:17 [INFO] [stderr] 5: 0x55856c46b7c2 - std::io::Write::write_fmt::heb7e50902e98831c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/io/mod.rs:1518:15 [INFO] [stderr] 6: 0x55856c472485 - std::sys_common::backtrace::_print::h2d880c9e69a21be9 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stderr] 7: 0x55856c472485 - std::sys_common::backtrace::print::h5f02b1bb49f36879 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stderr] 8: 0x55856c472485 - std::panicking::default_hook::{{closure}}::h658e288a7a809b29 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:208:50 [INFO] [stderr] 9: 0x55856c472128 - std::panicking::default_hook::hb52d73f0da9a4bb8 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:227:9 [INFO] [stderr] 10: 0x55856c472c21 - std::panicking::rust_panic_with_hook::hfe7e1c684e3e6462 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:593:17 [INFO] [stderr] 11: 0x55856c472767 - std::panicking::begin_panic_handler::{{closure}}::h42939e004b32765c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:499:13 [INFO] [stderr] 12: 0x55856c46fddc - std::sys_common::backtrace::__rust_end_short_backtrace::h9d2070f7bf9fd56c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stderr] 13: 0x55856c4726c9 - rust_begin_unwind [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:495:5 [INFO] [stderr] 14: 0x55856c47267b - std::panicking::begin_panic_fmt::h4a7e15187eac098d [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:437:5 [INFO] [stderr] 15: 0x55856bf35334 - cmake::fail::h031d7f5f58784453 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:894:5 [INFO] [stderr] 16: 0x55856bf34ca7 - cmake::run::h22f54e086f6efe55 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:872:9 [INFO] [stderr] 17: 0x55856bf30ff1 - cmake::Config::build::haca0006151240822 [INFO] [stderr] at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.45/src/lib.rs:707:13 [INFO] [stderr] 18: 0x55856bf2b3ef - build_script_build::main::hd792d877a9024b63 [INFO] [stderr] at /opt/rustwide/workdir/build.rs:30:19 [INFO] [stderr] 19: 0x55856bf2bedb - core::ops::function::FnOnce::call_once::hb5a624adc0a70b0e [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/ops/function.rs:227:5 [INFO] [stderr] 20: 0x55856bf2bd0e - std::sys_common::backtrace::__rust_begin_short_backtrace::h575749883b543e63 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stderr] 21: 0x55856bf2da71 - std::rt::lang_start::{{closure}}::h0d8ff068602ad565 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/rt.rs:66:18 [INFO] [stderr] 22: 0x55856c473047 - core::ops::function::impls:: for &F>::call_once::h57e2a071d427b24c [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/ops/function.rs:259:13 [INFO] [stderr] 23: 0x55856c473047 - std::panicking::try::do_call::h81cbbe0c3b30a28e [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:381:40 [INFO] [stderr] 24: 0x55856c473047 - std::panicking::try::hbeeb95b4e1f0a876 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:345:19 [INFO] [stderr] 25: 0x55856c473047 - std::panic::catch_unwind::h59c48ccb40a0bf20 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panic.rs:396:14 [INFO] [stderr] 26: 0x55856c473047 - std::rt::lang_start_internal::ha53ab63f88fee728 [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/rt.rs:51:25 [INFO] [stderr] 27: 0x55856bf2da47 - std::rt::lang_start::hb56b0942bcb8c3fa [INFO] [stderr] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/rt.rs:65:5 [INFO] [stderr] 28: 0x55856bf2b83a - main [INFO] [stderr] 29: 0x7fb927b380b3 - __libc_start_main [INFO] [stderr] 30: 0x55856bf2b0ce - _start [INFO] [stderr] 31: 0x0 - [INFO] running `Command { std: "docker" "inspect" "9711899ba6a78d9cf3ef81136616fa0c7ada5eabc4684bdee1d23065b9f16b1a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9711899ba6a78d9cf3ef81136616fa0c7ada5eabc4684bdee1d23065b9f16b1a", kill_on_drop: false }` [INFO] [stdout] 9711899ba6a78d9cf3ef81136616fa0c7ada5eabc4684bdee1d23065b9f16b1a