[INFO] cloning repository https://github.com/mttmartin/anneal_predictor [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/mttmartin/anneal_predictor" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8015bc6eaafedea32d296c1982070e2073c44112 [INFO] testing mttmartin/anneal_predictor against 1.49.0 for beta-1.50-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fmttmartin%2Fanneal_predictor" "/workspace/builds/worker-0/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/mttmartin/anneal_predictor on toolchain 1.49.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] finished tweaking git repo https://github.com/mttmartin/anneal_predictor [INFO] tweaked toml for git repo https://github.com/mttmartin/anneal_predictor written to /workspace/builds/worker-0/source/Cargo.toml [INFO] crate git repo https://github.com/mttmartin/anneal_predictor already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2248797d02dc7b6039032ef08e0e75e2f604f259dfcd531815295bbef8d472b0 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "2248797d02dc7b6039032ef08e0e75e2f604f259dfcd531815295bbef8d472b0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2248797d02dc7b6039032ef08e0e75e2f604f259dfcd531815295bbef8d472b0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2248797d02dc7b6039032ef08e0e75e2f604f259dfcd531815295bbef8d472b0", kill_on_drop: false }` [INFO] [stdout] 2248797d02dc7b6039032ef08e0e75e2f604f259dfcd531815295bbef8d472b0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 464e3c608014027d1ea26b9762c6efb2c72b814778861e93ec78f90cb983c462 [INFO] running `Command { std: "docker" "start" "-a" "464e3c608014027d1ea26b9762c6efb2c72b814778861e93ec78f90cb983c462", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling anneal_predictor v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:306:7 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | let mut deltaS = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:10:11 [INFO] [stdout] | [INFO] [stdout] 10 | let mut deltaH = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:278:7 [INFO] [stdout] | [INFO] [stdout] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:282:4 [INFO] [stdout] | [INFO] [stdout] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:284:7 [INFO] [stdout] | [INFO] [stdout] 284 | let deltaH = 9.62; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:285:7 [INFO] [stdout] | [INFO] [stdout] 285 | let deltaS = 17.15/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:286:7 [INFO] [stdout] | [INFO] [stdout] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:289:7 [INFO] [stdout] | [INFO] [stdout] 289 | let deltaH = 0.4184; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:290:7 [INFO] [stdout] | [INFO] [stdout] 290 | let deltaS = -11.72/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:291:7 [INFO] [stdout] | [INFO] [stdout] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `calc_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:299:4 [INFO] [stdout] | [INFO] [stdout] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:300:10 [INFO] [stdout] | [INFO] [stdout] 300 | let mut deltaG = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:303:11 [INFO] [stdout] | [INFO] [stdout] 303 | let mut initiation_deltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:306:11 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `lowest_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:321:11 [INFO] [stdout] | [INFO] [stdout] 321 | let mut lowestDeltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `currentDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:324:8 [INFO] [stdout] | [INFO] [stdout] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:339:6 [INFO] [stdout] | [INFO] [stdout] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 20 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 5.99s [INFO] running `Command { std: "docker" "inspect" "464e3c608014027d1ea26b9762c6efb2c72b814778861e93ec78f90cb983c462", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "464e3c608014027d1ea26b9762c6efb2c72b814778861e93ec78f90cb983c462", kill_on_drop: false }` [INFO] [stdout] 464e3c608014027d1ea26b9762c6efb2c72b814778861e93ec78f90cb983c462 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 44280ae566d26376568b2e6ba403f41fd69ce831e08a14993cea803c396e2470 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "44280ae566d26376568b2e6ba403f41fd69ce831e08a14993cea803c396e2470", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling anneal_predictor v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/main.rs:306:7 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stdout] --> src/main.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(non_snake_case)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:9:11 [INFO] [stdout] | [INFO] [stdout] 9 | let mut deltaS = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:10:11 [INFO] [stdout] | [INFO] [stdout] 10 | let mut deltaH = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:278:7 [INFO] [stdout] | [INFO] [stdout] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:282:4 [INFO] [stdout] | [INFO] [stdout] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:284:7 [INFO] [stdout] | [INFO] [stdout] 284 | let deltaH = 9.62; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:285:7 [INFO] [stdout] | [INFO] [stdout] 285 | let deltaS = 17.15/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:286:7 [INFO] [stdout] | [INFO] [stdout] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaH` should have a snake case name [INFO] [stdout] --> src/main.rs:289:7 [INFO] [stdout] | [INFO] [stdout] 289 | let deltaH = 0.4184; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaS` should have a snake case name [INFO] [stdout] --> src/main.rs:290:7 [INFO] [stdout] | [INFO] [stdout] 290 | let deltaS = -11.72/1000.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaGinit` should have a snake case name [INFO] [stdout] --> src/main.rs:291:7 [INFO] [stdout] | [INFO] [stdout] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stdout] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `calc_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:299:4 [INFO] [stdout] | [INFO] [stdout] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stdout] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:300:10 [INFO] [stdout] | [INFO] [stdout] 300 | let mut deltaG = 0.0; [INFO] [stdout] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:303:11 [INFO] [stdout] | [INFO] [stdout] 303 | let mut initiation_deltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:306:11 [INFO] [stdout] | [INFO] [stdout] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: method `lowest_deltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:320:5 [INFO] [stdout] | [INFO] [stdout] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:321:11 [INFO] [stdout] | [INFO] [stdout] 321 | let mut lowestDeltaG = 0.0; [INFO] [stdout] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `currentDeltaG` should have a snake case name [INFO] [stdout] --> src/main.rs:324:8 [INFO] [stdout] | [INFO] [stdout] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stdout] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:339:6 [INFO] [stdout] | [INFO] [stdout] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stdout] --> src/main.rs:354:7 [INFO] [stdout] | [INFO] [stdout] 354 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stdout] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 21 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 3.16s [INFO] running `Command { std: "docker" "inspect" "44280ae566d26376568b2e6ba403f41fd69ce831e08a14993cea803c396e2470", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "44280ae566d26376568b2e6ba403f41fd69ce831e08a14993cea803c396e2470", kill_on_drop: false }` [INFO] [stdout] 44280ae566d26376568b2e6ba403f41fd69ce831e08a14993cea803c396e2470 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] 1f6bfc6e67630e068653b64d51715c82d57ba9670b17e1ff7809bb02026089ad [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "1f6bfc6e67630e068653b64d51715c82d57ba9670b17e1ff7809bb02026089ad", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/main.rs:306:7 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: method `deltaG_dinucleotide` should have a snake case name [INFO] [stderr] --> src/main.rs:8:5 [INFO] [stderr] | [INFO] [stderr] 8 | fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `delta_g_dinucleotide` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(non_snake_case)]` on by default [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:9:11 [INFO] [stderr] | [INFO] [stderr] 9 | let mut deltaS = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:10:11 [INFO] [stderr] | [INFO] [stderr] 10 | let mut deltaH = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:278:7 [INFO] [stderr] | [INFO] [stderr] 278 | let deltaG = deltaH - self.temperature * deltaS; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `initiation_termination_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:282:4 [INFO] [stderr] | [INFO] [stderr] 282 | fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_termination_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:284:7 [INFO] [stderr] | [INFO] [stderr] 284 | let deltaH = 9.62; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:285:7 [INFO] [stderr] | [INFO] [stderr] 285 | let deltaS = 17.15/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:286:7 [INFO] [stderr] | [INFO] [stderr] 286 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaH` should have a snake case name [INFO] [stderr] --> src/main.rs:289:7 [INFO] [stderr] | [INFO] [stderr] 289 | let deltaH = 0.4184; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_h` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaS` should have a snake case name [INFO] [stderr] --> src/main.rs:290:7 [INFO] [stderr] | [INFO] [stderr] 290 | let deltaS = -11.72/1000.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_s` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaGinit` should have a snake case name [INFO] [stderr] --> src/main.rs:291:7 [INFO] [stderr] | [INFO] [stderr] 291 | let deltaGinit = deltaH - (self.temperature*deltaS); [INFO] [stderr] | ^^^^^^^^^^ help: convert the identifier to snake case: `delta_ginit` [INFO] [stderr] [INFO] [stderr] warning: method `calc_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:299:4 [INFO] [stderr] | [INFO] [stderr] 299 | fn calc_deltaG(&self, template_piece: String) -> f64{ [INFO] [stderr] | ^^^^^^^^^^^ help: convert the identifier to snake case: `calc_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:300:10 [INFO] [stderr] | [INFO] [stderr] 300 | let mut deltaG = 0.0; [INFO] [stderr] | ^^^^^^ help: convert the identifier to snake case: `delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `initiation_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:303:11 [INFO] [stderr] | [INFO] [stderr] 303 | let mut initiation_deltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `initiation_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `dinucleotide_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:306:11 [INFO] [stderr] | [INFO] [stderr] 306 | let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone()); [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `dinucleotide_delta_g` [INFO] [stderr] [INFO] [stderr] warning: method `lowest_deltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:320:5 [INFO] [stderr] | [INFO] [stderr] 320 | fn lowest_deltaG(&self) -> f64 { [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowestDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:321:11 [INFO] [stderr] | [INFO] [stderr] 321 | let mut lowestDeltaG = 0.0; [INFO] [stderr] | ^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `currentDeltaG` should have a snake case name [INFO] [stderr] --> src/main.rs:324:8 [INFO] [stderr] | [INFO] [stderr] 324 | let currentDeltaG = self.calc_deltaG(template_piece); [INFO] [stderr] | ^^^^^^^^^^^^^ help: convert the identifier to snake case: `current_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:339:6 [INFO] [stderr] | [INFO] [stderr] 339 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name [INFO] [stderr] --> src/main.rs:354:7 [INFO] [stderr] | [INFO] [stderr] 354 | let lowest_delta_G = simulation.lowest_deltaG(); [INFO] [stderr] | ^^^^^^^^^^^^^^ help: convert the identifier to snake case: `lowest_delta_g` [INFO] [stderr] [INFO] [stderr] warning: 21 warnings emitted [INFO] [stderr] [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 9.65s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/anneal_predictor-a280b387fc4611e6 [INFO] [stdout] [INFO] [stdout] running 1 test [INFO] [stdout] test tests::known_example ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- tests::known_example stdout ---- [INFO] [stdout] template piece: "CGTTGA" [INFO] [stdout] thread 'tests::known_example' panicked at 'assertion failed: lowest_delta_G <= acceptable_range.start && [INFO] [stdout] lowest_delta_G > acceptable_range.end', src/main.rs:356:9 [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x56334ecbb7b0 - std::backtrace_rs::backtrace::libunwind::trace::h04d12fdcddff82aa [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/../../backtrace/src/backtrace/libunwind.rs:100:5 [INFO] [stdout] 1: 0x56334ecbb7b0 - std::backtrace_rs::backtrace::trace_unsynchronized::h1459b974b6fbe5e1 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/../../backtrace/src/backtrace/mod.rs:66:5 [INFO] [stdout] 2: 0x56334ecbb7b0 - std::sys_common::backtrace::_print_fmt::h9b8396a669123d95 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:67:5 [INFO] [stdout] 3: 0x56334ecbb7b0 - ::fmt::he009dcaaa75eed60 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:46:22 [INFO] [stdout] 4: 0x56334ecde89c - core::fmt::write::h77b4746b0dea1dd3 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/fmt/mod.rs:1078:17 [INFO] [stdout] 5: 0x56334ec65576 - std::io::Write::write_fmt::h3a40d9c04f88bb58 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/io/mod.rs:1518:15 [INFO] [stdout] 6: 0x56334ecb5aad - std::io::impls::>::write_fmt::h1b3d263673641f53 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/io/impls.rs:179:9 [INFO] [stdout] 7: 0x56334ecbde85 - std::sys_common::backtrace::_print::h2d880c9e69a21be9 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:49:5 [INFO] [stdout] 8: 0x56334ecbde85 - std::sys_common::backtrace::print::h5f02b1bb49f36879 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:36:9 [INFO] [stdout] 9: 0x56334ecbde85 - std::panicking::default_hook::{{closure}}::h658e288a7a809b29 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:208:50 [INFO] [stdout] 10: 0x56334ecbdad2 - std::panicking::default_hook::hb52d73f0da9a4bb8 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:224:9 [INFO] [stdout] 11: 0x56334ecbe621 - std::panicking::rust_panic_with_hook::hfe7e1c684e3e6462 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:593:17 [INFO] [stdout] 12: 0x56334ec6195a - std::panicking::begin_panic::{{closure}}::h1ff2753ec89449cb [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:522:9 [INFO] [stdout] 13: 0x56334ec63578 - std::sys_common::backtrace::__rust_end_short_backtrace::h021d96c9ebe25207 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:141:18 [INFO] [stdout] 14: 0x56334ec61897 - std::panicking::begin_panic::hf58def3bb2a88982 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:521:12 [INFO] [stdout] 15: 0x56334ec62f82 - anneal_predictor::tests::known_example::ha760764121190262 [INFO] [stdout] at /opt/rustwide/workdir/src/main.rs:356:3 [INFO] [stdout] 16: 0x56334ec62dfa - anneal_predictor::tests::known_example::{{closure}}::he4802e0ba2967aeb [INFO] [stdout] at /opt/rustwide/workdir/src/main.rs:349:2 [INFO] [stdout] 17: 0x56334ec5f40e - core::ops::function::FnOnce::call_once::hd948ebc7ddacb18a [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 18: 0x56334ec8d0c3 - core::ops::function::FnOnce::call_once::hdbd2235b6243db3d [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 19: 0x56334ec8d0c3 - test::__rust_begin_short_backtrace::hb1dea1c208110812 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/test/src/lib.rs:517:5 [INFO] [stdout] 20: 0x56334ec8b56a - as core::ops::function::FnOnce>::call_once::h5d11a40efef721f2 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/alloc/src/boxed.rs:1307:9 [INFO] [stdout] 21: 0x56334ec8b56a - as core::ops::function::FnOnce<()>>::call_once::h23961df98af0bc5a [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panic.rs:322:9 [INFO] [stdout] 22: 0x56334ec8b56a - std::panicking::try::do_call::h6390646e3de3fb9e [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:381:40 [INFO] [stdout] 23: 0x56334ec8b56a - std::panicking::try::hc531439ab6159192 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:345:19 [INFO] [stdout] 24: 0x56334ec8b56a - std::panic::catch_unwind::h859d8bdaf9b4855c [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panic.rs:396:14 [INFO] [stdout] 25: 0x56334ec8b56a - test::run_test_in_process::hae60aa74417e3abc [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/test/src/lib.rs:544:18 [INFO] [stdout] 26: 0x56334ec8b56a - test::run_test::run_test_inner::{{closure}}::hf48c86652c4a151d [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/test/src/lib.rs:450:39 [INFO] [stdout] 27: 0x56334ec648f6 - std::sys_common::backtrace::__rust_begin_short_backtrace::hb82b392232b8bd1f [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys_common/backtrace.rs:125:18 [INFO] [stdout] 28: 0x56334ec698f3 - std::thread::Builder::spawn_unchecked::{{closure}}::{{closure}}::h79ca9e9abe157956 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/thread/mod.rs:474:17 [INFO] [stdout] 29: 0x56334ec698f3 - as core::ops::function::FnOnce<()>>::call_once::ha12f1f228780a4f7 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panic.rs:322:9 [INFO] [stdout] 30: 0x56334ec698f3 - std::panicking::try::do_call::h722bb7416d021cdc [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:381:40 [INFO] [stdout] 31: 0x56334ec698f3 - std::panicking::try::h78e5abca71ac7cac [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panicking.rs:345:19 [INFO] [stdout] 32: 0x56334ec698f3 - std::panic::catch_unwind::h95162588bd0fa090 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/panic.rs:396:14 [INFO] [stdout] 33: 0x56334ec698f3 - std::thread::Builder::spawn_unchecked::{{closure}}::h64da5c4b9acc58dc [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/thread/mod.rs:473:30 [INFO] [stdout] 34: 0x56334ec698f3 - core::ops::function::FnOnce::call_once{{vtable.shim}}::h7a8c588ad0b69edb [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/core/src/ops/function.rs:227:5 [INFO] [stdout] 35: 0x56334ecc4a4a - as core::ops::function::FnOnce>::call_once::h09ff301006f1aeca [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/alloc/src/boxed.rs:1307:9 [INFO] [stdout] 36: 0x56334ecc4a4a - as core::ops::function::FnOnce>::call_once::he79488c8f00b5f31 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/alloc/src/boxed.rs:1307:9 [INFO] [stdout] 37: 0x56334ecc4a4a - std::sys::unix::thread::Thread::new::thread_start::h587efff279c68ba7 [INFO] [stdout] at /rustc/e1884a8e3c3e813aada8254edfa120e85bf5ffca/library/std/src/sys/unix/thread.rs:71:17 [INFO] [stdout] 38: 0x7f4277db4609 - start_thread [INFO] [stdout] 39: 0x7f4277b86293 - clone [INFO] [stdout] 40: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] tests::known_example [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stderr] error: test failed, to rerun pass '--bin anneal_predictor' [INFO] running `Command { std: "docker" "inspect" "1f6bfc6e67630e068653b64d51715c82d57ba9670b17e1ff7809bb02026089ad", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1f6bfc6e67630e068653b64d51715c82d57ba9670b17e1ff7809bb02026089ad", kill_on_drop: false }` [INFO] [stdout] 1f6bfc6e67630e068653b64d51715c82d57ba9670b17e1ff7809bb02026089ad