[INFO] cloning repository https://github.com/guertinlab/seqOutBias [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/guertinlab/seqOutBias" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 67da62f4574d2f3dbe7243ab817d5a885bbb257d [INFO] testing guertinlab/seqOutBias against 1.49.0 for beta-1.50-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fguertinlab%2FseqOutBias" "/workspace/builds/worker-12/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-12/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/guertinlab/seqOutBias on toolchain 1.49.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] finished tweaking git repo https://github.com/guertinlab/seqOutBias [INFO] tweaked toml for git repo https://github.com/guertinlab/seqOutBias written to /workspace/builds/worker-12/source/Cargo.toml [INFO] crate git repo https://github.com/guertinlab/seqOutBias already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 43fcb96ae05d38d5ac3bff7a5e8b47c01b754816fd38a59d4aaca555e081d60e [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "43fcb96ae05d38d5ac3bff7a5e8b47c01b754816fd38a59d4aaca555e081d60e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "43fcb96ae05d38d5ac3bff7a5e8b47c01b754816fd38a59d4aaca555e081d60e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "43fcb96ae05d38d5ac3bff7a5e8b47c01b754816fd38a59d4aaca555e081d60e", kill_on_drop: false }` [INFO] [stdout] 43fcb96ae05d38d5ac3bff7a5e8b47c01b754816fd38a59d4aaca555e081d60e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-12/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:b8eeb62f26c39b23691079a6cb6de528d8e88b4d71a8f6b1d30f8ba7d9c16de9" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] aa1f2d013b6f8f72dd3e72ef65367dada10295f708c3881189dc669ef47d83fd [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "aa1f2d013b6f8f72dd3e72ef65367dada10295f708c3881189dc669ef47d83fd", kill_on_drop: false }` [INFO] [stderr] Compiling either v1.1.0 [INFO] [stderr] Compiling rust-htslib v0.12.1 [INFO] [stderr] Compiling lazy_static v0.2.6 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling quick-error v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.2 [INFO] [stderr] Compiling memchr v0.1.11 [INFO] [stderr] Compiling miniz-sys v0.1.9 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling idna v0.1.2 [INFO] [stderr] Compiling seqOutBias v1.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling rand v0.3.22 [INFO] [stderr] Compiling bincode v0.5.9 [INFO] [stderr] Compiling thread-id v2.0.0 [INFO] [stderr] Compiling tempfile v2.2.0 [INFO] [stderr] Compiling thread_local v0.2.7 [INFO] [stderr] Compiling aho-corasick v0.5.3 [INFO] [stderr] Compiling itertools v0.6.0 [INFO] [stderr] Compiling regex v0.1.80 [INFO] [stderr] Compiling flate2 v0.2.18 [INFO] [stderr] Compiling url v1.7.2 [INFO] [stderr] Compiling docopt v0.6.86 [INFO] [stdout] error: could not find native static library `hts`, perhaps an -L flag is missing? [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to previous error [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `rust-htslib` [INFO] [stderr] [INFO] [stderr] To learn more, run the command again with --verbose. [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stderr] error: build failed [INFO] running `Command { std: "docker" "inspect" "aa1f2d013b6f8f72dd3e72ef65367dada10295f708c3881189dc669ef47d83fd", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "aa1f2d013b6f8f72dd3e72ef65367dada10295f708c3881189dc669ef47d83fd", kill_on_drop: false }` [INFO] [stdout] aa1f2d013b6f8f72dd3e72ef65367dada10295f708c3881189dc669ef47d83fd