[INFO] cloning repository https://github.com/TianyiShi2001/protein [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/TianyiShi2001/protein" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Fprotein", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Fprotein'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] bd89e850f1b3ccaeabb7412abf1e3349aa6fd17b [INFO] testing TianyiShi2001/protein against 1.49.0 for beta-1.50-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FTianyiShi2001%2Fprotein" "/workspace/builds/worker-2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/TianyiShi2001/protein on toolchain 1.49.0 [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/TianyiShi2001/protein [INFO] removed workspace from git repo https://github.com/TianyiShi2001/protein [INFO] removed path dependency protein-analysis from git repo https://github.com/TianyiShi2001/protein [INFO] removed path dependency protein-get from git repo https://github.com/TianyiShi2001/protein [INFO] removed path dependency protein-io from git repo https://github.com/TianyiShi2001/protein [INFO] finished tweaking git repo https://github.com/TianyiShi2001/protein [INFO] tweaked toml for git repo https://github.com/TianyiShi2001/protein written to /workspace/builds/worker-2/source/Cargo.toml [INFO] crate git repo https://github.com/TianyiShi2001/protein already has a lockfile, it will not be regenerated [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] error: the lock file /workspace/builds/worker-2/source/Cargo.lock needs to be updated but --locked was passed to prevent this [INFO] [stderr] If you want to try to generate the lock file without accessing the network, use the --offline flag. [INFO] the lockfile is outdated, regenerating it [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }` [INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.49.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] [stdout] 285f6544737d16c5a5aa5b3c6fd5016bb7b45ced1a6f6d4960faa4b59ab80d60 [INFO] running `Command { std: "docker" "start" "-a" "285f6544737d16c5a5aa5b3c6fd5016bb7b45ced1a6f6d4960faa4b59ab80d60", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "285f6544737d16c5a5aa5b3c6fd5016bb7b45ced1a6f6d4960faa4b59ab80d60", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "285f6544737d16c5a5aa5b3c6fd5016bb7b45ced1a6f6d4960faa4b59ab80d60", kill_on_drop: false }` [INFO] [stdout] 285f6544737d16c5a5aa5b3c6fd5016bb7b45ced1a6f6d4960faa4b59ab80d60 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] c63b385860f991bdaa86ddac06b910afcc786349c2e094fe2c0a36ea0171daaa [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "c63b385860f991bdaa86ddac06b910afcc786349c2e094fe2c0a36ea0171daaa", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.81 [INFO] [stderr] Compiling syn v1.0.58 [INFO] [stderr] Compiling itoa v0.4.7 [INFO] [stderr] Compiling serde v1.0.118 [INFO] [stderr] Compiling futures-core v0.3.8 [INFO] [stderr] Compiling bytes v0.5.6 [INFO] [stderr] Compiling pin-project-internal v0.4.27 [INFO] [stderr] Compiling pin-project-lite v0.1.11 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling foreign-types-shared v0.1.1 [INFO] [stderr] Compiling pin-project-lite v0.2.1 [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling openssl v0.10.32 [INFO] [stderr] Compiling native-tls v0.2.7 [INFO] [stderr] Compiling futures-io v0.3.8 [INFO] [stderr] Compiling futures-sink v0.3.8 [INFO] [stderr] Compiling pin-utils v0.1.0 [INFO] [stderr] Compiling openssl-probe v0.1.2 [INFO] [stderr] Compiling try-lock v0.2.3 [INFO] [stderr] Compiling lexical-core v0.7.4 [INFO] [stderr] Compiling arrayvec v0.5.2 [INFO] [stderr] Compiling tower-service v0.3.0 [INFO] [stderr] Compiling encoding_rs v0.8.26 [INFO] [stderr] Compiling static_assertions v1.1.0 [INFO] [stderr] Compiling httpdate v0.3.2 [INFO] [stderr] Compiling dihedral v0.0.4 [INFO] [stderr] Compiling mime v0.3.16 [INFO] [stderr] Compiling base64 v0.13.0 [INFO] [stderr] Compiling ipnet v2.3.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling unicase v2.6.0 [INFO] [stderr] Compiling tracing-core v0.1.17 [INFO] [stderr] Compiling nom v5.1.2 [INFO] [stderr] Compiling openssl-sys v0.9.60 [INFO] [stderr] Compiling foreign-types v0.3.2 [INFO] [stderr] Compiling futures-channel v0.3.8 [INFO] [stderr] Compiling form_urlencoded v1.0.0 [INFO] [stderr] Compiling futures-task v0.3.8 [INFO] [stderr] Compiling indexmap v1.6.1 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling http v0.2.2 [INFO] [stderr] Compiling heck v0.3.2 [INFO] [stderr] Compiling unicode-normalization v0.1.16 [INFO] [stderr] Compiling quote v1.0.8 [INFO] [stderr] Compiling want v0.3.0 [INFO] [stderr] Compiling tracing v0.1.22 [INFO] [stderr] Compiling mime_guess v2.0.3 [INFO] [stderr] Compiling net2 v0.2.37 [INFO] [stderr] Compiling iovec v0.1.4 [INFO] [stderr] Compiling num_cpus v1.13.0 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling socket2 v0.3.19 [INFO] [stderr] Compiling flate2 v1.0.19 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling mio v0.6.23 [INFO] [stderr] Compiling atoi v0.3.3 [INFO] [stderr] Compiling url v2.2.0 [INFO] [stderr] Compiling http-body v0.3.1 [INFO] [stderr] Compiling tokio v0.2.24 [INFO] [stderr] Compiling tokio-util v0.3.1 [INFO] [stderr] Compiling tokio-tls v0.3.1 [INFO] [stderr] Compiling serde_derive v1.0.118 [INFO] [stderr] Compiling pin-project-internal v1.0.3 [INFO] [stderr] Compiling strum_macros v0.19.4 [INFO] [stderr] Compiling strum v0.19.5 [INFO] [stderr] Compiling pin-project v1.0.3 [INFO] [stderr] Compiling pin-project v0.4.27 [INFO] [stderr] Compiling futures-util v0.3.8 [INFO] [stderr] Compiling tracing-futures v0.2.4 [INFO] [stderr] Compiling h2 v0.2.7 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling serde_json v1.0.61 [INFO] [stderr] Compiling serde_urlencoded v0.7.0 [INFO] [stderr] Compiling hyper v0.13.9 [INFO] [stderr] Compiling protein-core v0.1.7 [INFO] [stderr] Compiling nom-pdb v0.0.9 [INFO] [stderr] Compiling protein-analysis v0.0.1 [INFO] [stderr] Compiling protein-io v0.0.1 [INFO] [stderr] Compiling hyper-tls v0.4.3 [INFO] [stderr] Compiling reqwest v0.10.10 [INFO] [stderr] Compiling protein-get v0.0.2 [INFO] [stderr] Compiling protein v0.0.5 (/opt/rustwide/workdir) [INFO] [stderr] Finished dev [unoptimized + debuginfo] target(s) in 2m 29s [INFO] running `Command { std: "docker" "inspect" "c63b385860f991bdaa86ddac06b910afcc786349c2e094fe2c0a36ea0171daaa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c63b385860f991bdaa86ddac06b910afcc786349c2e094fe2c0a36ea0171daaa", kill_on_drop: false }` [INFO] [stdout] c63b385860f991bdaa86ddac06b910afcc786349c2e094fe2c0a36ea0171daaa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] cc6ee62ebda05b410241cdadcbfdbefb3b078c8849f6a5f50ea2cbcaf9a4ceaa [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "cc6ee62ebda05b410241cdadcbfdbefb3b078c8849f6a5f50ea2cbcaf9a4ceaa", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling regex-automata v0.1.9 [INFO] [stderr] Compiling bstr v0.2.14 [INFO] [stderr] Compiling csv v1.1.5 [INFO] [stderr] Compiling protein v0.0.5 (/opt/rustwide/workdir) [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 13.34s [INFO] running `Command { std: "docker" "inspect" "cc6ee62ebda05b410241cdadcbfdbefb3b078c8849f6a5f50ea2cbcaf9a4ceaa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "cc6ee62ebda05b410241cdadcbfdbefb3b078c8849f6a5f50ea2cbcaf9a4ceaa", kill_on_drop: false }` [INFO] [stdout] cc6ee62ebda05b410241cdadcbfdbefb3b078c8849f6a5f50ea2cbcaf9a4ceaa [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:c8ac004eab7d63a0ad09a2dde3d3353ba464f767bee4de425dc8f74c46a1905e" "/opt/rustwide/cargo-home/bin/cargo" "+1.49.0" "test" "--frozen", kill_on_drop: false }` [INFO] [stdout] bc33e987d3c6ce531f7aa09423ca45dfb97f8a59288fbac492ffd1c9a6ae45c5 [INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap. [INFO] running `Command { std: "docker" "start" "-a" "bc33e987d3c6ce531f7aa09423ca45dfb97f8a59288fbac492ffd1c9a6ae45c5", kill_on_drop: false }` [INFO] [stderr] Finished test [unoptimized + debuginfo] target(s) in 0.14s [INFO] [stderr] Running /opt/rustwide/target/debug/deps/protein-ff8aa15166bdf5bb [INFO] [stdout] [INFO] [stderr] Doc-tests protein [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "bc33e987d3c6ce531f7aa09423ca45dfb97f8a59288fbac492ffd1c9a6ae45c5", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "bc33e987d3c6ce531f7aa09423ca45dfb97f8a59288fbac492ffd1c9a6ae45c5", kill_on_drop: false }` [INFO] [stdout] bc33e987d3c6ce531f7aa09423ca45dfb97f8a59288fbac492ffd1c9a6ae45c5