[INFO] fetching crate perbase 0.4.0...
[INFO] documenting perbase-0.4.0 against beta-2020-10-09 for beta-1.48-rustdoc-1
[INFO] extracting crate perbase 0.4.0 into /workspace/builds/worker-9/source
[INFO] validating manifest of crates.io crate perbase 0.4.0 on toolchain beta-2020-10-09
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate perbase 0.4.0
[INFO] finished tweaking crates.io crate perbase 0.4.0
[INFO] tweaked toml for crates.io crate perbase 0.4.0 written to /workspace/builds/worker-9/source/Cargo.toml
[INFO] crate crates.io crate perbase 0.4.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded smartstring v0.2.4
[INFO] [stderr]   Downloaded grep-cli v0.1.5
[INFO] [stderr]   Downloaded rust-lapper v0.5.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 7b2c438876b5afd1a29ef6a02b4ce7f390b39d434769c39e7764cd9579737a8f
[INFO] running `Command { std: "docker" "start" "-a" "7b2c438876b5afd1a29ef6a02b4ce7f390b39d434769c39e7764cd9579737a8f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "7b2c438876b5afd1a29ef6a02b4ce7f390b39d434769c39e7764cd9579737a8f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7b2c438876b5afd1a29ef6a02b4ce7f390b39d434769c39e7764cd9579737a8f", kill_on_drop: false }`
[INFO] [stdout] 7b2c438876b5afd1a29ef6a02b4ce7f390b39d434769c39e7764cd9579737a8f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-9/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 988fedc3932e8b727c5b9671b18e9e883132ef42ef67a8e21b7fda455524191f
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "988fedc3932e8b727c5b9671b18e9e883132ef42ef67a8e21b7fda455524191f", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]     Checking strum v0.18.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking triple_accel v0.3.4
[INFO] [stderr]     Checking lru_time_cache v0.11.2
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling libc v0.2.77
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling rayon v1.4.0
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking ordered-float v1.1.0
[INFO] [stderr]     Checking rust-lapper v0.5.0
[INFO] [stderr]     Checking petgraph v0.5.1
[INFO] [stderr]     Checking env_logger v0.7.1
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling enum-map-derive v0.4.3
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling snafu-derive v0.6.9
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]     Checking rayon-core v1.8.1
[INFO] [stderr]     Checking serde v1.0.116
[INFO] [stderr]     Checking statrs v0.12.0
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling jobserver v0.1.21
[INFO] [stderr]    Compiling structopt-derive v0.4.11
[INFO] [stderr]    Compiling cc v1.0.60
[INFO] [stderr]    Compiling openssl-src v111.10.2+1.1.1g
[INFO] [stderr]     Checking enum-map v0.6.3
[INFO] [stderr]     Checking thiserror v1.0.20
[INFO] [stderr]    Compiling libz-sys v1.1.2
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling curl-sys v0.4.36+curl-7.71.1
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling hts-sys v1.10.3
[INFO] [stderr]     Checking snafu v0.6.9
[INFO] [stderr]     Checking bstr v0.2.13
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking bio-types v0.7.0
[INFO] [stderr]     Checking multimap v0.8.2
[INFO] [stderr]     Checking smartstring v0.2.4
[INFO] [stderr]     Checking clap v2.33.3
[INFO] [stderr]     Checking csv v1.1.3
[INFO] [stderr]     Checking globset v0.4.5
[INFO] [stderr]     Checking grep-cli v0.1.5
[INFO] [stderr]     Checking structopt v0.3.18
[INFO] [stderr]     Checking rust-htslib v0.32.0
[INFO] [stderr]     Checking perbase v0.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]  Documenting perbase v0.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/base_depth.rs:128:32
[INFO] [stdout]     |
[INFO] [stdout] 128 | /// Holds the info needed for [par_io::RegionProcessor] implementation
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^^^^^^^^ the module `base_depth` contains no item named `par_io`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::ReadFilter`
[INFO] [stdout]    --> src/commands/base_depth.rs:140:28
[INFO] [stdout]     |
[INFO] [stdout] 140 |     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout]     |                            ^^^^^^^^^^^^^^^^^^^^ the module `base_depth` contains no item named `position`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:151:32
[INFO] [stdout]     |
[INFO] [stdout] 151 | /// Holds the info needed for [par_io::RegionProcessor] implementation
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^^^^^^^^ the module `only_depth` contains no item named `par_io`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::ReadFilter`
[INFO] [stdout]    --> src/commands/only_depth.rs:163:28
[INFO] [stdout]     |
[INFO] [stdout] 163 |     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout]     |                            ^^^^^^^^^^^^^^^^^^^^ the module `only_depth` contains no item named `position`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/base_depth.rs:173:16
[INFO] [stdout]     |
[INFO] [stdout] 173 | /// Implement [par_io::RegionProcessor] for [BaseProcessor]
[INFO] [stdout]     |                ^^^^^^^^^^^^^^^^^^^^^^^ the module `base_depth` contains no item named `par_io`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `pipeup_position::PileupPosition`
[INFO] [stdout]    --> src/commands/base_depth.rs:175:21
[INFO] [stdout]     |
[INFO] [stdout] 175 |     /// Objects of [pipeup_position::PileupPosition] will be returned by each call to [BaseProcessor::process_region]
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the module `base_depth` contains no item named `pipeup_position`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:420:16
[INFO] [stdout]     |
[INFO] [stdout] 420 | /// Implement [par_io::RegionProcessor] for [SimpleProcessor]
[INFO] [stdout]     |                ^^^^^^^^^^^^^^^^^^^^^^^ the module `only_depth` contains no item named `par_io`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `SimpleProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:420:46
[INFO] [stdout]     |
[INFO] [stdout] 420 | /// Implement [par_io::RegionProcessor] for [SimpleProcessor]
[INFO] [stdout]     |                                              ^^^^^^^^^^^^^^^ the module `only_depth` contains no item named `SimpleProcessor`
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::Position`
[INFO] [stdout]    --> src/commands/only_depth.rs:422:21
[INFO] [stdout]     |
[INFO] [stdout] 422 |     /// Objects of [position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^ the module `only_depth` contains no item named `position`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `SimpleProcessor::process_region`
[INFO] [stdout]    --> src/commands/only_depth.rs:422:75
[INFO] [stdout]     |
[INFO] [stdout] 422 |     /// Objects of [position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout]     |                                                                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ the module `only_depth` contains no item named `SimpleProcessor`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 10 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 13s
[INFO] running `Command { std: "docker" "inspect" "988fedc3932e8b727c5b9671b18e9e883132ef42ef67a8e21b7fda455524191f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "988fedc3932e8b727c5b9671b18e9e883132ef42ef67a8e21b7fda455524191f", kill_on_drop: false }`
[INFO] [stdout] 988fedc3932e8b727c5b9671b18e9e883132ef42ef67a8e21b7fda455524191f
