[INFO] fetching crate openmm-sys 7.4.1...
[INFO] documenting openmm-sys-7.4.1 against beta-2020-10-09 for beta-1.48-rustdoc-1
[INFO] extracting crate openmm-sys 7.4.1 into /workspace/builds/worker-13/source
[INFO] validating manifest of crates.io crate openmm-sys 7.4.1 on toolchain beta-2020-10-09
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate openmm-sys 7.4.1
[INFO] finished tweaking crates.io crate openmm-sys 7.4.1
[INFO] tweaked toml for crates.io crate openmm-sys 7.4.1 written to /workspace/builds/worker-13/source/Cargo.toml
[INFO] crate crates.io crate openmm-sys 7.4.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 83b2f7fc65f9a2f34b5f7fe8706fafede02ae6d4dfbabe7cfe60c52f47d91f10
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "83b2f7fc65f9a2f34b5f7fe8706fafede02ae6d4dfbabe7cfe60c52f47d91f10", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "83b2f7fc65f9a2f34b5f7fe8706fafede02ae6d4dfbabe7cfe60c52f47d91f10", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "83b2f7fc65f9a2f34b5f7fe8706fafede02ae6d4dfbabe7cfe60c52f47d91f10", kill_on_drop: false }`
[INFO] [stdout] 83b2f7fc65f9a2f34b5f7fe8706fafede02ae6d4dfbabe7cfe60c52f47d91f10
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-13/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 06bffa0808fa63630afe5a6731a18c0e633a566fa0eeb59d1e50de76019d65c0
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "06bffa0808fa63630afe5a6731a18c0e633a566fa0eeb59d1e50de76019d65c0", kill_on_drop: false }`
[INFO] [stderr]    Compiling cc v1.0.59
[INFO] [stderr]    Compiling cmake v0.1.44
[INFO] [stderr]    Compiling openmm-sys v7.4.1 (/opt/rustwide/workdir)
[INFO] [stderr] The following warnings were emitted during compilation:
[INFO] [stderr] 
[INFO] [stderr] warning: [OpenMM-sys] Dynamically linking against the OpenMM library.
[INFO] [stderr] 
[INFO] [stderr] error: failed to run custom build command for `openmm-sys v7.4.1 (/opt/rustwide/workdir)`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/openmm-sys-1d86e8586a142383/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   cargo:warning=[OpenMM-sys] Dynamically linking against the OpenMM library.
[INFO] [stderr]   running: "cmake" "/opt/rustwide/workdir/openmm" "-DOPENMM_BUILD_PYTHON_WRAPPERS=OFF" "-DCMAKE_INSTALL_PREFIX=/opt/rustwide/target/debug/build/openmm-sys-c685390387225ebf/out" "-DCMAKE_C_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_C_COMPILER=/usr/bin/cc" "-DCMAKE_CXX_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_CXX_COMPILER=/usr/bin/c++" "-DCMAKE_ASM_FLAGS= -ffunction-sections -fdata-sections -fPIC -m64" "-DCMAKE_ASM_COMPILER=/usr/bin/cc" "-DCMAKE_BUILD_TYPE=Release"
[INFO] [stderr]   -- Found PythonInterp: /usr/bin/python (found version "2.7.18") 
[INFO] [stderr]   -- The C compiler identification is GNU 9.3.0
[INFO] [stderr]   -- The CXX compiler identification is GNU 9.3.0
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc
[INFO] [stderr]   -- Check for working C compiler: /usr/bin/cc -- works
[INFO] [stderr]   -- Detecting C compiler ABI info
[INFO] [stderr]   -- Detecting C compiler ABI info - done
[INFO] [stderr]   -- Detecting C compile features
[INFO] [stderr]   -- Detecting C compile features - done
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++
[INFO] [stderr]   -- Check for working CXX compiler: /usr/bin/c++ -- works
[INFO] [stderr]   -- Detecting CXX compiler ABI info
[INFO] [stderr]   -- Detecting CXX compiler ABI info - done
[INFO] [stderr]   -- Detecting CXX compile features
[INFO] [stderr]   -- Detecting CXX compile features - done
[INFO] [stderr]   -- Configuring incomplete, errors occurred!
[INFO] [stderr]   See also "/opt/rustwide/target/debug/build/openmm-sys-c685390387225ebf/out/build/CMakeFiles/CMakeOutput.log".
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   fatal: not a git repository (or any parent up to mount point /opt/rustwide)
[INFO] [stderr]   Stopping at filesystem boundary (GIT_DISCOVERY_ACROSS_FILESYSTEM not set).
[INFO] [stderr]   CMake Deprecation Warning at CMakeLists.txt:25 (CMAKE_POLICY):
[INFO] [stderr]     The OLD behavior for policy CMP0042 will be removed from a future version
[INFO] [stderr]     of CMake.
[INFO] [stderr] 
[INFO] [stderr]     The cmake-policies(7) manual explains that the OLD behaviors of all
[INFO] [stderr]     policies are deprecated and that a policy should be set to OLD only under
[INFO] [stderr]     specific short-term circumstances.  Projects should be ported to the NEW
[INFO] [stderr]     behavior and not rely on setting a policy to OLD.
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   CMake Error at /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:146 (message):
[INFO] [stderr]     Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE)
[INFO] [stderr]   Call Stack (most recent call first):
[INFO] [stderr]     /usr/share/cmake-3.16/Modules/FindPackageHandleStandardArgs.cmake:393 (_FPHSA_FAILURE_MESSAGE)
[INFO] [stderr]     /usr/share/cmake-3.16/Modules/FindDoxygen.cmake:633 (find_package_handle_standard_args)
[INFO] [stderr]     wrappers/CMakeLists.txt:1 (find_package)
[INFO] [stderr] 
[INFO] [stderr] 
[INFO] [stderr]   thread 'main' panicked at '
[INFO] [stderr]   command did not execute successfully, got: exit code: 1
[INFO] [stderr] 
[INFO] [stderr]   build script failed, must exit now', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/cmake-0.1.44/src/lib.rs:885:5
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x561f50652a70 - std::backtrace_rs::backtrace::libunwind::trace::h7cf3ca97bd83fbab
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x561f50652a70 - std::backtrace_rs::backtrace::trace_unsynchronized::h5a69c674b2d9ea5c
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x561f50652a70 - std::sys_common::backtrace::_print_fmt::hdf72478dfcb50678
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x561f50652a70 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h1e0bdbb35e83deca
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x561f50671d4c - core::fmt::write::he67f9b17bcb7ee73
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/core/src/fmt/mod.rs:1080
[INFO] [stderr]      5:     0x561f5064f212 - std::io::Write::write_fmt::hac97d5cb5753e2ec
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/io/mod.rs:1516
[INFO] [stderr]      6:     0x561f5065522d - std::sys_common::backtrace::_print::haa20918e28a126c5
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x561f5065522d - std::sys_common::backtrace::print::h49e772a4873d9076
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x561f5065522d - std::panicking::default_hook::{{closure}}::hb218b305d15e3f11
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:208
[INFO] [stderr]      9:     0x561f50654ed8 - std::panicking::default_hook::h63997b7b949e1ce0
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:227
[INFO] [stderr]     10:     0x561f50655911 - std::panicking::rust_panic_with_hook::hb54f09ccadf64bd3
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:577
[INFO] [stderr]     11:     0x561f506554b9 - std::panicking::begin_panic_handler::{{closure}}::h8b43445b254eeb30
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:484
[INFO] [stderr]     12:     0x561f50652efc - std::sys_common::backtrace::__rust_end_short_backtrace::hacd691450edfeae0
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x561f50655479 - rust_begin_unwind
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:483
[INFO] [stderr]     14:     0x561f5065542b - std::panicking::begin_panic_fmt::hef75366dd3a9de61
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:437
[INFO] [stderr]     15:     0x561f505e79ce - cmake::fail::h5020b461d8a8fe80
[INFO] [stderr]     16:     0x561f505e7346 - cmake::run::h583ca27a01c79fc0
[INFO] [stderr]     17:     0x561f505e30db - cmake::Config::build::h32e236948cf635b8
[INFO] [stderr]     18:     0x561f505ddb2a - build_script_build::main::hac757d0f2f66b78a
[INFO] [stderr]     19:     0x561f505de483 - core::ops::function::FnOnce::call_once::hacb0a76b324ce210
[INFO] [stderr]     20:     0x561f505de3e9 - std::sys_common::backtrace::__rust_begin_short_backtrace::h278f3923bbafc012
[INFO] [stderr]     21:     0x561f505e0019 - std::rt::lang_start::{{closure}}::he0baca57cbd3ec67
[INFO] [stderr]     22:     0x561f50655d37 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h908982dfc31b926f
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/core/src/ops/function.rs:259
[INFO] [stderr]     23:     0x561f50655d37 - std::panicking::try::do_call::h92777899503b7584
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:381
[INFO] [stderr]     24:     0x561f50655d37 - std::panicking::try::h8815656b2b76e792
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:345
[INFO] [stderr]     25:     0x561f50655d37 - std::panic::catch_unwind::h112ab81228f50b46
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panic.rs:382
[INFO] [stderr]     26:     0x561f50655d37 - std::rt::lang_start_internal::h1772a706c7575c24
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/rt.rs:51
[INFO] [stderr]     27:     0x561f505dfff8 - std::rt::lang_start::h7b83060892d79b42
[INFO] [stderr]     28:     0x561f505ddc8b - main
[INFO] [stderr]     29:     0x7f181524f0b3 - __libc_start_main
[INFO] [stderr]     30:     0x561f505da0ce - _start
[INFO] [stderr]     31:                0x0 - <unknown>
[INFO] running `Command { std: "docker" "inspect" "06bffa0808fa63630afe5a6731a18c0e633a566fa0eeb59d1e50de76019d65c0", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "06bffa0808fa63630afe5a6731a18c0e633a566fa0eeb59d1e50de76019d65c0", kill_on_drop: false }`
[INFO] [stdout] 06bffa0808fa63630afe5a6731a18c0e633a566fa0eeb59d1e50de76019d65c0
