[INFO] cloning repository https://github.com/clemson-cal/app-binary2d
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/clemson-cal/app-binary2d" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 87a91bc3bfdde1978eecb16fdcd004a835b44806
[INFO] documenting clemson-cal/app-binary2d against 1.47.0 for beta-1.48-rustdoc-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fclemson-cal%2Fapp-binary2d" "/workspace/builds/worker-6/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/clemson-cal/app-binary2d on toolchain 1.47.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/clemson-cal/app-binary2d
[INFO] finished tweaking git repo https://github.com/clemson-cal/app-binary2d
[INFO] tweaked toml for git repo https://github.com/clemson-cal/app-binary2d written to /workspace/builds/worker-6/source/Cargo.toml
[INFO] crate git repo https://github.com/clemson-cal/app-binary2d already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] c98e24b707d61f08df7e287b89b54acffbfc0f1fe0bc5a2d410792d1848253c9
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c98e24b707d61f08df7e287b89b54acffbfc0f1fe0bc5a2d410792d1848253c9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c98e24b707d61f08df7e287b89b54acffbfc0f1fe0bc5a2d410792d1848253c9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c98e24b707d61f08df7e287b89b54acffbfc0f1fe0bc5a2d410792d1848253c9", kill_on_drop: false }`
[INFO] [stdout] c98e24b707d61f08df7e287b89b54acffbfc0f1fe0bc5a2d410792d1848253c9
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] e11169e01c6eb86c38923cd05f8efd6a422d82b988c84ca847469d474578aa4c
[INFO] running `Command { std: "docker" "start" "-a" "e11169e01c6eb86c38923cd05f8efd6a422d82b988c84ca847469d474578aa4c", kill_on_drop: false }`
[INFO] [stderr]    Compiling libloading v0.6.3
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling hdf5 v0.7.0
[INFO] [stderr]     Checking kepler-two-body v0.1.0 (https://github.com/clemson-cal/kepler-two-body#d42ade30)
[INFO] [stderr]     Checking hydro-iso2d v0.1.0 (https://github.com/clemson-cal/hydro-iso2d#3efbf6d7)
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling memoffset v0.5.5
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]     Checking num-traits v0.2.12
[INFO] [stderr]     Checking parking_lot_core v0.7.2
[INFO] [stderr]     Checking hdf5-types v0.7.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling hdf5-derive v0.7.0
[INFO] [stderr]     Checking parking_lot v0.10.2
[INFO] [stderr]     Checking crossbeam-epoch v0.8.2
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]     Checking crossbeam-deque v0.7.3
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]     Checking crossbeam v0.7.3
[INFO] [stderr]     Checking num-complex v0.3.0
[INFO] [stderr]    Compiling clap_derive v3.0.0-beta.2
[INFO] [stderr]     Checking num-bigint v0.3.0
[INFO] [stderr]     Checking num-iter v0.1.41
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]     Checking num-rational v0.3.0
[INFO] [stderr]     Checking num v0.3.0
[INFO] [stderr]     Checking clap v3.0.0-beta.1
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr]     Checking godunov-core v0.1.0 (https://github.com/clemson-cal/godunov-core#49b75883)
[INFO] [stderr]     Checking ndarray-ops v0.1.0 (https://github.com/clemson-cal/ndarray-ops#6e8165ff)
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-77ffcff86ee44f50/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x55977fe1e6a0 - std::backtrace_rs::backtrace::libunwind::trace::h577ea05e9ca4629a
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x55977fe1e6a0 - std::backtrace_rs::backtrace::trace_unsynchronized::h50b9b72b84c7dd56
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x55977fe1e6a0 - std::sys_common::backtrace::_print_fmt::h6541cf9823837fac
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x55977fe1e6a0 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::hf64fbff071026df5
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x55977fe3d2fc - core::fmt::write::h9ddafa4860d8adff
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/fmt/mod.rs:1082
[INFO] [stderr]      5:     0x55977fe1b737 - std::io::Write::write_fmt::h1d2ee292d2b65481
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/io/mod.rs:1514
[INFO] [stderr]      6:     0x55977fe208e0 - std::sys_common::backtrace::_print::ha25f9ff5080d886d
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x55977fe208e0 - std::sys_common::backtrace::print::h213e8aa8dc5405c0
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x55977fe208e0 - std::panicking::default_hook::{{closure}}::h6482fae49ef9d963
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:200
[INFO] [stderr]      9:     0x55977fe2062c - std::panicking::default_hook::he30ad7589e0970f9
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:219
[INFO] [stderr]     10:     0x55977fe20f43 - std::panicking::rust_panic_with_hook::haa1ed36ada4ffb03
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:569
[INFO] [stderr]     11:     0x55977fc2101c - std::panicking::begin_panic::{{closure}}::h71fae3c83fde937f
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:498
[INFO] [stderr]     12:     0x55977fc0dc59 - std::sys_common::backtrace::__rust_end_short_backtrace::h38fa34e7fa08370a
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x55977fc20f47 - std::panicking::begin_panic::hfa3699d98df1f195
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:497
[INFO] [stderr]     14:     0x55977fbf22fc - build_script_build::LibrarySearcher::try_locate_hdf5_library::h5cbbde53f4cfbfce
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549
[INFO] [stderr]     15:     0x55977fbf3c7c - build_script_build::main::h6557e9210ceae137
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647
[INFO] [stderr]     16:     0x55977fbfac0b - core::ops::function::FnOnce::call_once::hcce611b1d9224610
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/ops/function.rs:227
[INFO] [stderr]     17:     0x55977fbf832e - std::sys_common::backtrace::__rust_begin_short_backtrace::h5b32f5253f088921
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/sys_common/backtrace.rs:137
[INFO] [stderr]     18:     0x55977fbfa5b1 - std::rt::lang_start::{{closure}}::hac4830d865235715
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:66
[INFO] [stderr]     19:     0x55977fe21341 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h6a3209f124be2235
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/core/src/ops/function.rs:259
[INFO] [stderr]     20:     0x55977fe21341 - std::panicking::try::do_call::h88ce358792b64df0
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:373
[INFO] [stderr]     21:     0x55977fe21341 - std::panicking::try::h6311c259678e50fc
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panicking.rs:337
[INFO] [stderr]     22:     0x55977fe21341 - std::panic::catch_unwind::h56c5716807d659a1
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/panic.rs:379
[INFO] [stderr]     23:     0x55977fe21341 - std::rt::lang_start_internal::h73711f37ecfcb277
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:51
[INFO] [stderr]     24:     0x55977fbfa587 - std::rt::lang_start::hefc9da042148bc2e
[INFO] [stderr]                                  at /rustc/18bf6b4f01a6feaf7259ba7cdae58031af1b7b39/library/std/src/rt.rs:65
[INFO] [stderr]     25:     0x55977fbf53ca - main
[INFO] [stderr]     26:     0x7f6e464ce0b3 - __libc_start_main
[INFO] [stderr]     27:     0x55977fbed0be - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "e11169e01c6eb86c38923cd05f8efd6a422d82b988c84ca847469d474578aa4c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e11169e01c6eb86c38923cd05f8efd6a422d82b988c84ca847469d474578aa4c", kill_on_drop: false }`
[INFO] [stdout] e11169e01c6eb86c38923cd05f8efd6a422d82b988c84ca847469d474578aa4c
