[INFO] fetching crate netcdf-src 0.1.3...
[INFO] documenting netcdf-src-0.1.3 against beta-2020-10-09 for beta-1.48-rustdoc-1
[INFO] extracting crate netcdf-src 0.1.3 into /workspace/builds/worker-14/source
[INFO] validating manifest of crates.io crate netcdf-src 0.1.3 on toolchain beta-2020-10-09
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate netcdf-src 0.1.3
[INFO] finished tweaking crates.io crate netcdf-src 0.1.3
[INFO] tweaked toml for crates.io crate netcdf-src 0.1.3 written to /workspace/builds/worker-14/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f5724a7bf1606060c20d3ed17ecf7080bba6bc26feae48d126b07ed61514dc62
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f5724a7bf1606060c20d3ed17ecf7080bba6bc26feae48d126b07ed61514dc62", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f5724a7bf1606060c20d3ed17ecf7080bba6bc26feae48d126b07ed61514dc62", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f5724a7bf1606060c20d3ed17ecf7080bba6bc26feae48d126b07ed61514dc62", kill_on_drop: false }`
[INFO] [stdout] f5724a7bf1606060c20d3ed17ecf7080bba6bc26feae48d126b07ed61514dc62
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-14/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 83837ac4da58edfa166cf6da4849305449f14a75f2603cc29104b261af8376a6
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "83837ac4da58edfa166cf6da4849305449f14a75f2603cc29104b261af8376a6", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling hdf5-src v0.7.0
[INFO] [stderr]    Compiling netcdf-src v0.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling hdf5-sys v0.7.0
[INFO] [stderr] error: failed to run custom build command for `hdf5-sys v0.7.0`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/debug/build/hdf5-sys-ba8360e6e55575b6/build-script-build` (exit code: 101)
[INFO] [stderr]   --- stdout
[INFO] [stderr]   Attempting to find HDF5 via pkg-config...
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_NO_PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=HDF5_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_STATIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_ALL_DYNAMIC
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_PATH
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_LIBDIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64-unknown-linux-gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR_x86_64_unknown_linux_gnu
[INFO] [stderr]   cargo:rerun-if-env-changed=HOST_PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr]   cargo:rerun-if-env-changed=PKG_CONFIG_SYSROOT_DIR
[INFO] [stderr] 
[INFO] [stderr]   --- stderr
[INFO] [stderr]   thread 'main' panicked at 'Unable to locate HDF5 root directory and/or headers.', /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549:13
[INFO] [stderr]   stack backtrace:
[INFO] [stderr]      0:     0x555947ff1230 - std::backtrace_rs::backtrace::libunwind::trace::h7cf3ca97bd83fbab
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:96
[INFO] [stderr]      1:     0x555947ff1230 - std::backtrace_rs::backtrace::trace_unsynchronized::h5a69c674b2d9ea5c
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/../../backtrace/src/backtrace/mod.rs:66
[INFO] [stderr]      2:     0x555947ff1230 - std::sys_common::backtrace::_print_fmt::hdf72478dfcb50678
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:79
[INFO] [stderr]      3:     0x555947ff1230 - <std::sys_common::backtrace::_print::DisplayBacktrace as core::fmt::Display>::fmt::h1e0bdbb35e83deca
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:58
[INFO] [stderr]      4:     0x55594800f2cc - core::fmt::write::he67f9b17bcb7ee73
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/core/src/fmt/mod.rs:1080
[INFO] [stderr]      5:     0x555947fee162 - std::io::Write::write_fmt::hac97d5cb5753e2ec
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/io/mod.rs:1516
[INFO] [stderr]      6:     0x555947ff353d - std::sys_common::backtrace::_print::haa20918e28a126c5
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:61
[INFO] [stderr]      7:     0x555947ff353d - std::sys_common::backtrace::print::h49e772a4873d9076
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:48
[INFO] [stderr]      8:     0x555947ff353d - std::panicking::default_hook::{{closure}}::hb218b305d15e3f11
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:208
[INFO] [stderr]      9:     0x555947ff31e8 - std::panicking::default_hook::h63997b7b949e1ce0
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:227
[INFO] [stderr]     10:     0x555947ff3c21 - std::panicking::rust_panic_with_hook::hb54f09ccadf64bd3
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:577
[INFO] [stderr]     11:     0x555947df0b7c - std::panicking::begin_panic::{{closure}}::h09370bc4c066cbdf
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:506
[INFO] [stderr]     12:     0x555947de0be9 - std::sys_common::backtrace::__rust_end_short_backtrace::hdcec2fcc0f79b2a3
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:153
[INFO] [stderr]     13:     0x555947df0aa7 - std::panicking::begin_panic::h74a90b6fdf6aa66c
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:505
[INFO] [stderr]     14:     0x555947dc61ec - build_script_build::LibrarySearcher::try_locate_hdf5_library::h093348eb609b9512
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:549
[INFO] [stderr]     15:     0x555947dc7aac - build_script_build::main::h858a15f046d1171d
[INFO] [stderr]                                  at /opt/rustwide/cargo-home/registry/src/github.com-1ecc6299db9ec823/hdf5-sys-0.7.0/build.rs:647
[INFO] [stderr]     16:     0x555947dce28b - core::ops::function::FnOnce::call_once::ha1435e696bdf0744
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/core/src/ops/function.rs:227
[INFO] [stderr]     17:     0x555947dd53ee - std::sys_common::backtrace::__rust_begin_short_backtrace::h3fec726de66e234c
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/sys_common/backtrace.rs:137
[INFO] [stderr]     18:     0x555947dd3181 - std::rt::lang_start::{{closure}}::he2792fe3112b9690
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/rt.rs:66
[INFO] [stderr]     19:     0x555947ff4047 - core::ops::function::impls::<impl core::ops::function::FnOnce<A> for &F>::call_once::h908982dfc31b926f
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/core/src/ops/function.rs:259
[INFO] [stderr]     20:     0x555947ff4047 - std::panicking::try::do_call::h92777899503b7584
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:381
[INFO] [stderr]     21:     0x555947ff4047 - std::panicking::try::h8815656b2b76e792
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panicking.rs:345
[INFO] [stderr]     22:     0x555947ff4047 - std::panic::catch_unwind::h112ab81228f50b46
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/panic.rs:382
[INFO] [stderr]     23:     0x555947ff4047 - std::rt::lang_start_internal::h1772a706c7575c24
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/rt.rs:51
[INFO] [stderr]     24:     0x555947dd3157 - std::rt::lang_start::h755e73b88bd4991b
[INFO] [stderr]                                  at /rustc/212e76c31d461462544b5d516d3bdc99fc8f016e/library/std/src/rt.rs:65
[INFO] [stderr]     25:     0x555947dc911a - main
[INFO] [stderr]     26:     0x7fc07dfb50b3 - __libc_start_main
[INFO] [stderr]     27:     0x555947dc10be - _start
[INFO] [stderr]     28:                0x0 - <unknown>
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: build failed
[INFO] running `Command { std: "docker" "inspect" "83837ac4da58edfa166cf6da4849305449f14a75f2603cc29104b261af8376a6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "83837ac4da58edfa166cf6da4849305449f14a75f2603cc29104b261af8376a6", kill_on_drop: false }`
[INFO] [stdout] 83837ac4da58edfa166cf6da4849305449f14a75f2603cc29104b261af8376a6
