[INFO] fetching crate ncbitaxonomy 1.0.7...
[INFO] testing ncbitaxonomy-1.0.7 against beta-2020-10-09 for beta-1.48-1
[INFO] extracting crate ncbitaxonomy 1.0.7 into /workspace/builds/worker-1/source
[INFO] validating manifest of crates.io crate ncbitaxonomy 1.0.7 on toolchain beta-2020-10-09
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate ncbitaxonomy 1.0.7
[INFO] finished tweaking crates.io crate ncbitaxonomy 1.0.7
[INFO] tweaked toml for crates.io crate ncbitaxonomy 1.0.7 written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] crate crates.io crate ncbitaxonomy 1.0.7 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded serde v1.0.112
[INFO] [stderr]   Downloaded serde_derive v1.0.112
[INFO] [stderr]   Downloaded clap v2.32.0
[INFO] [stderr]   Downloaded dotenv v0.9.0
[INFO] [stderr]   Downloaded ordered-float v1.0.2
[INFO] [stderr]   Downloaded backtrace v0.3.49
[INFO] [stderr]   Downloaded indextree v3.3.0
[INFO] [stderr]   Downloaded bio-types v0.6.0
[INFO] [stderr]   Downloaded textwrap v0.10.0
[INFO] [stderr]   Downloaded bv v0.10.0
[INFO] [stderr]   Downloaded bio v0.25.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 4a1c043b3dfd005d5aa44e2499b18205911658cd04ccf8cf79801ce87c4df610
[INFO] running `Command { std: "docker" "start" "-a" "4a1c043b3dfd005d5aa44e2499b18205911658cd04ccf8cf79801ce87c4df610", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4a1c043b3dfd005d5aa44e2499b18205911658cd04ccf8cf79801ce87c4df610", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4a1c043b3dfd005d5aa44e2499b18205911658cd04ccf8cf79801ce87c4df610", kill_on_drop: false }`
[INFO] [stdout] 4a1c043b3dfd005d5aa44e2499b18205911658cd04ccf8cf79801ce87c4df610
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9bc694afe464fa0cc64856433db0110b6834d8a24028df5cf1aba1fd4a646cd2
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "9bc694afe464fa0cc64856433db0110b6834d8a24028df5cf1aba1fd4a646cd2", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v1.0.31
[INFO] [stderr]    Compiling libc v0.2.71
[INFO] [stderr]    Compiling serde v1.0.112
[INFO] [stderr]    Compiling arrayvec v0.4.12
[INFO] [stderr]    Compiling nodrop v0.1.14
[INFO] [stderr]    Compiling memoffset v0.2.1
[INFO] [stderr]    Compiling crossbeam-utils v0.5.0
[INFO] [stderr]    Compiling adler32 v1.1.0
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling gimli v0.21.0
[INFO] [stderr]    Compiling object v0.20.0
[INFO] [stderr]    Compiling ndarray v0.12.1
[INFO] [stderr]    Compiling safemem v0.2.0
[INFO] [stderr]    Compiling bio v0.25.0
[INFO] [stderr]    Compiling bit-vec v0.6.2
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling strsim v0.7.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling libsqlite3-sys v0.18.0
[INFO] [stderr]    Compiling crossbeam-utils v0.6.6
[INFO] [stderr]    Compiling owning_ref v0.4.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling itertools v0.7.11
[INFO] [stderr]    Compiling textwrap v0.10.0
[INFO] [stderr]    Compiling miniz_oxide v0.3.7
[INFO] [stderr]    Compiling proc-macro2 v1.0.18
[INFO] [stderr]    Compiling bv v0.10.0
[INFO] [stderr]    Compiling lock_api v0.1.5
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling parking_lot_core v0.3.1
[INFO] [stderr]    Compiling aho-corasick v0.7.10
[INFO] [stderr]    Compiling aho-corasick v0.6.10
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling crossbeam-epoch v0.6.1
[INFO] [stderr]    Compiling crossbeam-epoch v0.5.2
[INFO] [stderr]    Compiling rand v0.5.6
[INFO] [stderr]    Compiling rand v0.4.6
[INFO] [stderr]    Compiling slice-deque v0.1.16
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling flate2 v1.0.14
[INFO] [stderr]    Compiling crossbeam-deque v0.5.2
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling buf_redux v0.7.1
[INFO] [stderr]    Compiling rand v0.3.23
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling parking_lot v0.6.4
[INFO] [stderr]    Compiling dotenv v0.9.0
[INFO] [stderr]    Compiling crossbeam-channel v0.2.6
[INFO] [stderr]    Compiling addr2line v0.12.1
[INFO] [stderr]    Compiling crossbeam v0.4.1
[INFO] [stderr]    Compiling backtrace v0.3.49
[INFO] [stderr]    Compiling synstructure v0.12.4
[INFO] [stderr]    Compiling serde_derive v1.0.112
[INFO] [stderr]    Compiling diesel_derives v1.4.1
[INFO] [stderr]    Compiling failure_derive v0.1.8
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling thiserror-impl v1.0.20
[INFO] [stderr]    Compiling failure v0.1.8
[INFO] [stderr]    Compiling indextree v3.3.0
[INFO] [stderr]    Compiling thiserror v1.0.20
[INFO] [stderr]    Compiling diesel v1.4.5
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling bio-types v0.6.0
[INFO] [stderr]    Compiling seq_io v0.3.0
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling migrations_internals v1.4.1
[INFO] [stderr]    Compiling migrations_macros v1.4.2
[INFO] [stderr]    Compiling diesel_migrations v1.4.0
[INFO] [stderr]    Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 21s
[INFO] running `Command { std: "docker" "inspect" "9bc694afe464fa0cc64856433db0110b6834d8a24028df5cf1aba1fd4a646cd2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9bc694afe464fa0cc64856433db0110b6834d8a24028df5cf1aba1fd4a646cd2", kill_on_drop: false }`
[INFO] [stdout] 9bc694afe464fa0cc64856433db0110b6834d8a24028df5cf1aba1fd4a646cd2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 795cac461fac2b8dd8fbb1d4b30dfe25fe86945d401cfe6416da8d12d683c465
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "795cac461fac2b8dd8fbb1d4b30dfe25fe86945d401cfe6416da8d12d683c465", kill_on_drop: false }`
[INFO] [stderr]    Compiling ncbitaxonomy v1.0.7 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 6.09s
[INFO] running `Command { std: "docker" "inspect" "795cac461fac2b8dd8fbb1d4b30dfe25fe86945d401cfe6416da8d12d683c465", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "795cac461fac2b8dd8fbb1d4b30dfe25fe86945d401cfe6416da8d12d683c465", kill_on_drop: false }`
[INFO] [stdout] 795cac461fac2b8dd8fbb1d4b30dfe25fe86945d401cfe6416da8d12d683c465
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 8b219456f1ceb18111bdc1fb9b12cd713d280a40632ef78f5d5d51b437885372
[INFO] running `Command { std: "docker" "start" "-a" "8b219456f1ceb18111bdc1fb9b12cd713d280a40632ef78f5d5d51b437885372", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.20s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/ncbitaxonomy-bc9b9e798ee35e79
[INFO] [stdout] 
[INFO] [stdout] running 23 tests
[INFO] [stdout] test tests::sqlite_contains_name ... ok
[INFO] [stdout] test tests::sqlite_descendants ... ok
[INFO] [stdout] test tests::contains_id ... ok
[INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_canonical ... ok
[INFO] [stdout] test tests::get_lineage_sqlite ... ok
[INFO] [stdout] test tests::get_lineage ... ok
[INFO] [stdout] test tests::distance_to_common_ancestor_taxid_canonical ... ok
[INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid_canonical ... ok
[INFO] [stdout] test tests::distance_to_common_ancestor_taxid ... ok
[INFO] [stdout] test tests::sqlite_distance_to_common_ancestor_taxid ... ok
[INFO] [stdout] test tests::distance_to_common_ancestor ... ok
[INFO] [stdout] test tests::sqlite_get_name_by_id ... ok
[INFO] [stdout] test tests::get_name_by_id ... ok
[INFO] [stdout] test tests::sqlite_distance_to_common_ancestor ... ok
[INFO] [stdout] test tests::get_id_by_node ... ok
[INFO] [stdout] test tests::descendants ... ok
[INFO] [stdout] test tests::sqlite_contains_id ... ok
[INFO] [stdout] test tests::distance_to_common_ancestor_canonical ... ok
[INFO] [stdout] test tests::sqlite_taxid_descendants ... ok
[INFO] [stdout] test tests::contains_name ... ok
[INFO] [stdout] test tests::get_node_by_id ... ok
[INFO] [stdout] test tests::traversal ... ok
[INFO] [stdout] test tests::taxid_descendants ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/taxonomy_filter_fastq-9db4553dde4856cb
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/taxonomy_filter_refseq-cccc14861374f98b
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/taxonomy_util-94bc81cdb1a025de
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests ncbitaxonomy
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/lib.rs - NcbiFileTaxonomy::from_ncbi_files (line 105) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "8b219456f1ceb18111bdc1fb9b12cd713d280a40632ef78f5d5d51b437885372", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8b219456f1ceb18111bdc1fb9b12cd713d280a40632ef78f5d5d51b437885372", kill_on_drop: false }`
[INFO] [stdout] 8b219456f1ceb18111bdc1fb9b12cd713d280a40632ef78f5d5d51b437885372
