[INFO] fetching crate bio-jtools 2020.9.22...
[INFO] testing bio-jtools-2020.9.22 against beta-2020-10-09 for beta-1.48-1
[INFO] extracting crate bio-jtools 2020.9.22 into /workspace/builds/worker-8/source
[INFO] validating manifest of crates.io crate bio-jtools 2020.9.22 on toolchain beta-2020-10-09
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bio-jtools 2020.9.22
[INFO] finished tweaking crates.io crate bio-jtools 2020.9.22
[INFO] tweaked toml for crates.io crate bio-jtools 2020.9.22 written to /workspace/builds/worker-8/source/Cargo.toml
[INFO] crate crates.io crate bio-jtools 2020.9.22 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded snafu-derive v0.5.0
[INFO] [stderr]   Downloaded strum_macros v0.16.0
[INFO] [stderr]   Downloaded snafu v0.5.0
[INFO] [stderr]   Downloaded bv v0.11.0
[INFO] [stderr]   Downloaded multimap v0.6.0
[INFO] [stderr]   Downloaded strum v0.16.0
[INFO] [stderr]   Downloaded statrs v0.11.0
[INFO] [stderr]   Downloaded bio v0.30.0
[INFO] [stderr]   Downloaded rust-lapper v0.4.4
[INFO] [stderr]   Downloaded needletail v0.3.2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 36e59460aa470ed072e9acb72a3a85bcdb928709d4c17511f9111bb2d27d6540
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "36e59460aa470ed072e9acb72a3a85bcdb928709d4c17511f9111bb2d27d6540", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "36e59460aa470ed072e9acb72a3a85bcdb928709d4c17511f9111bb2d27d6540", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "36e59460aa470ed072e9acb72a3a85bcdb928709d4c17511f9111bb2d27d6540", kill_on_drop: false }`
[INFO] [stdout] 36e59460aa470ed072e9acb72a3a85bcdb928709d4c17511f9111bb2d27d6540
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 43e5c78c33f4f2083b5b3ad4adcc41b999ccbed9246c933085969744d5fbb253
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "43e5c78c33f4f2083b5b3ad4adcc41b999ccbed9246c933085969744d5fbb253", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling proc-macro2 v1.0.8
[INFO] [stderr]    Compiling syn v1.0.14
[INFO] [stderr]    Compiling serde v1.0.104
[INFO] [stderr]    Compiling memchr v2.3.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling doc-comment v0.3.1
[INFO] [stderr]    Compiling rustc-demangle v0.1.16
[INFO] [stderr]    Compiling ndarray v0.13.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling bit-vec v0.5.1
[INFO] [stderr]    Compiling proc-macro-hack v0.5.16
[INFO] [stderr]    Compiling ordermap v0.3.5
[INFO] [stderr]    Compiling unindent v0.1.5
[INFO] [stderr]    Compiling fixedbitset v0.1.9
[INFO] [stderr]    Compiling bio v0.30.0
[INFO] [stderr]    Compiling strum v0.16.0
[INFO] [stderr]    Compiling yaml-rust v0.3.5
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling fnv v1.0.6
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling encode_unicode v0.3.6
[INFO] [stderr]    Compiling rust-lapper v0.4.4
[INFO] [stderr]    Compiling backtrace-sys v0.1.32
[INFO] [stderr]    Compiling bzip2-sys v0.1.8+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling bit-set v0.5.1
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bv v0.11.0
[INFO] [stderr]    Compiling petgraph v0.4.13
[INFO] [stderr]    Compiling rand_os v0.1.3
[INFO] [stderr]    Compiling dirs v1.0.5
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling time v0.1.43
[INFO] [stderr]    Compiling flate2 v1.0.13
[INFO] [stderr]    Compiling rand v0.6.5
[INFO] [stderr]    Compiling term v0.5.2
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.0.2
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling snafu-derive v0.5.0
[INFO] [stderr]    Compiling csv-core v0.1.6
[INFO] [stderr]    Compiling aho-corasick v0.7.8
[INFO] [stderr]    Compiling chrono v0.4.11
[INFO] [stderr]    Compiling quote v1.0.2
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling bzip2 v0.3.3
[INFO] [stderr]    Compiling backtrace v0.3.43
[INFO] [stderr]    Compiling needletail v0.3.2
[INFO] [stderr]    Compiling statrs v0.11.0
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling snafu v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.104
[INFO] [stderr]    Compiling indoc-impl v0.3.5
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.16.0
[INFO] [stderr]    Compiling indoc v0.3.5
[INFO] [stderr]    Compiling bstr v0.2.11
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling bio-types v0.5.1
[INFO] [stderr]    Compiling clap v2.33.0
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling prettytable-rs v0.8.0
[INFO] [stderr]    Compiling bio-jtools v2020.9.22 (/opt/rustwide/workdir)
[INFO] [stdout] warning: variant is never constructed: `Peak`
[INFO] [stdout]   --> src/utils/mod.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 |     Peak(Peak),
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant is never constructed: `Peak`
[INFO] [stdout]   --> src/utils/mod.rs:33:5
[INFO] [stdout]    |
[INFO] [stdout] 33 |     Peak,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant is never constructed: `BroadPeak`
[INFO] [stdout]   --> src/utils/mod.rs:38:5
[INFO] [stdout]    |
[INFO] [stdout] 38 |     BroadPeak,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant is never constructed: `GappedPeak`
[INFO] [stdout]   --> src/utils/mod.rs:39:5
[INFO] [stdout]    |
[INFO] [stdout] 39 |     GappedPeak,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant is never constructed: `NarrowPeak`
[INFO] [stdout]   --> src/utils/mod.rs:40:5
[INFO] [stdout]    |
[INFO] [stdout] 40 |     NarrowPeak,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `zipped`
[INFO] [stdout]   --> src/utils/mod.rs:47:5
[INFO] [stdout]    |
[INFO] [stdout] 47 |     zipped: bool,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `is_zipped`
[INFO] [stdout]   --> src/utils/mod.rs:64:12
[INFO] [stdout]    |
[INFO] [stdout] 64 |     pub fn is_zipped(&self) -> bool {
[INFO] [stdout]    |            ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 7 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 33s
[INFO] running `Command { std: "docker" "inspect" "43e5c78c33f4f2083b5b3ad4adcc41b999ccbed9246c933085969744d5fbb253", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "43e5c78c33f4f2083b5b3ad4adcc41b999ccbed9246c933085969744d5fbb253", kill_on_drop: false }`
[INFO] [stdout] 43e5c78c33f4f2083b5b3ad4adcc41b999ccbed9246c933085969744d5fbb253
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] ffa15bb53252b99fb019ec99bdd74c91881e48d8245a8d4b34b0acaf16fd94fc
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "ffa15bb53252b99fb019ec99bdd74c91881e48d8245a8d4b34b0acaf16fd94fc", kill_on_drop: false }`
[INFO] [stderr]    Compiling bio-jtools v2020.9.22 (/opt/rustwide/workdir)
[INFO] [stdout] warning: variant is never constructed: `Peak`
[INFO] [stdout]   --> src/utils/mod.rs:13:5
[INFO] [stdout]    |
[INFO] [stdout] 13 |     Peak(Peak),
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant is never constructed: `Peak`
[INFO] [stdout]   --> src/utils/mod.rs:33:5
[INFO] [stdout]    |
[INFO] [stdout] 33 |     Peak,
[INFO] [stdout]    |     ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant is never constructed: `BroadPeak`
[INFO] [stdout]   --> src/utils/mod.rs:38:5
[INFO] [stdout]    |
[INFO] [stdout] 38 |     BroadPeak,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant is never constructed: `GappedPeak`
[INFO] [stdout]   --> src/utils/mod.rs:39:5
[INFO] [stdout]    |
[INFO] [stdout] 39 |     GappedPeak,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant is never constructed: `NarrowPeak`
[INFO] [stdout]   --> src/utils/mod.rs:40:5
[INFO] [stdout]    |
[INFO] [stdout] 40 |     NarrowPeak,
[INFO] [stdout]    |     ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field is never read: `zipped`
[INFO] [stdout]   --> src/utils/mod.rs:47:5
[INFO] [stdout]    |
[INFO] [stdout] 47 |     zipped: bool,
[INFO] [stdout]    |     ^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function is never used: `is_zipped`
[INFO] [stdout]   --> src/utils/mod.rs:64:12
[INFO] [stdout]    |
[INFO] [stdout] 64 |     pub fn is_zipped(&self) -> bool {
[INFO] [stdout]    |            ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 7 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 1.36s
[INFO] running `Command { std: "docker" "inspect" "ffa15bb53252b99fb019ec99bdd74c91881e48d8245a8d4b34b0acaf16fd94fc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ffa15bb53252b99fb019ec99bdd74c91881e48d8245a8d4b34b0acaf16fd94fc", kill_on_drop: false }`
[INFO] [stdout] ffa15bb53252b99fb019ec99bdd74c91881e48d8245a8d4b34b0acaf16fd94fc
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-8/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] c35a8c14d1b5245628ff0b920715b6164e2f540eb872d5fdd116a9b0ec83b34c
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "c35a8c14d1b5245628ff0b920715b6164e2f540eb872d5fdd116a9b0ec83b34c", kill_on_drop: false }`
[INFO] [stderr] warning: variant is never constructed: `Peak`
[INFO] [stderr]   --> src/utils/mod.rs:13:5
[INFO] [stderr]    |
[INFO] [stderr] 13 |     Peak(Peak),
[INFO] [stderr]    |     ^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variant is never constructed: `Peak`
[INFO] [stderr]   --> src/utils/mod.rs:33:5
[INFO] [stderr]    |
[INFO] [stderr] 33 |     Peak,
[INFO] [stderr]    |     ^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variant is never constructed: `BroadPeak`
[INFO] [stderr]   --> src/utils/mod.rs:38:5
[INFO] [stderr]    |
[INFO] [stderr] 38 |     BroadPeak,
[INFO] [stderr]    |     ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variant is never constructed: `GappedPeak`
[INFO] [stderr]   --> src/utils/mod.rs:39:5
[INFO] [stderr]    |
[INFO] [stderr] 39 |     GappedPeak,
[INFO] [stderr]    |     ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variant is never constructed: `NarrowPeak`
[INFO] [stderr]   --> src/utils/mod.rs:40:5
[INFO] [stderr]    |
[INFO] [stderr] 40 |     NarrowPeak,
[INFO] [stderr]    |     ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: field is never read: `zipped`
[INFO] [stderr]   --> src/utils/mod.rs:47:5
[INFO] [stderr]    |
[INFO] [stderr] 47 |     zipped: bool,
[INFO] [stderr]    |     ^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: associated function is never used: `is_zipped`
[INFO] [stderr]   --> src/utils/mod.rs:64:12
[INFO] [stderr]    |
[INFO] [stderr] 64 |     pub fn is_zipped(&self) -> bool {
[INFO] [stderr]    |            ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: 7 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.20s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/bjt-31258f528cec0035
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c35a8c14d1b5245628ff0b920715b6164e2f540eb872d5fdd116a9b0ec83b34c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c35a8c14d1b5245628ff0b920715b6164e2f540eb872d5fdd116a9b0ec83b34c", kill_on_drop: false }`
[INFO] [stdout] c35a8c14d1b5245628ff0b920715b6164e2f540eb872d5fdd116a9b0ec83b34c
