[INFO] cloning repository https://github.com/chfi/rs-gfa-utils
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chfi/rs-gfa-utils" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frs-gfa-utils", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frs-gfa-utils'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 4d86e6accd3db697fe796cdabebc9004e3378462
[INFO] testing chfi/rs-gfa-utils against beta-2020-10-09 for beta-1.48-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Frs-gfa-utils" "/workspace/builds/worker-5/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/chfi/rs-gfa-utils on toolchain beta-2020-10-09
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/chfi/rs-gfa-utils
[INFO] finished tweaking git repo https://github.com/chfi/rs-gfa-utils
[INFO] tweaked toml for git repo https://github.com/chfi/rs-gfa-utils written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] crate git repo https://github.com/chfi/rs-gfa-utils already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded aho-corasick v0.7.12
[INFO] [stderr]   Downloaded three-edge-connected v0.1.0
[INFO] [stderr]   Downloaded saboten v0.0.2
[INFO] [stderr]   Downloaded handlegraph v0.5.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 04b98f9e77929008bb40b5832974a12e9090a19f261d0bf31c0426fcbf255627
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "04b98f9e77929008bb40b5832974a12e9090a19f261d0bf31c0426fcbf255627", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "04b98f9e77929008bb40b5832974a12e9090a19f261d0bf31c0426fcbf255627", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "04b98f9e77929008bb40b5832974a12e9090a19f261d0bf31c0426fcbf255627", kill_on_drop: false }`
[INFO] [stdout] 04b98f9e77929008bb40b5832974a12e9090a19f261d0bf31c0426fcbf255627
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 1074e53999ba4a480f0a437fe79eb5d424a018125429208e2088412d0d10a619
[INFO] running `Command { std: "docker" "start" "-a" "1074e53999ba4a480f0a437fe79eb5d424a018125429208e2088412d0d10a619", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling syn v1.0.33
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling rayon v1.4.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling terminal_size v0.1.13
[INFO] [stderr]    Compiling termios v0.3.2
[INFO] [stderr]    Compiling time v0.1.44
[INFO] [stderr]    Compiling lexical-core v0.7.4
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling aho-corasick v0.7.12
[INFO] [stderr]    Compiling crossbeam-channel v0.4.4
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rayon-core v1.8.1
[INFO] [stderr]    Compiling chrono v0.4.19
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling nom v5.1.2
[INFO] [stderr]    Compiling console v0.12.0
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling pretty_env_logger v0.4.0
[INFO] [stderr]    Compiling indicatif v0.15.0
[INFO] [stderr]    Compiling syn-mid v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.114
[INFO] [stderr]    Compiling bytemuck_derive v1.0.0
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.3
[INFO] [stderr]    Compiling snafu-derive v0.6.9
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling enum-map-derive v0.4.3
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling proc-macro-error v1.0.3
[INFO] [stderr]    Compiling enum-map v0.6.3
[INFO] [stderr]    Compiling structopt-derive v0.4.8
[INFO] [stderr]    Compiling bytemuck v1.4.1
[INFO] [stderr]    Compiling snafu v0.6.9
[INFO] [stderr]    Compiling serde v1.0.114
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling serde_json v1.0.57
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling multimap v0.8.2
[INFO] [stderr]    Compiling clap v2.33.1
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling gfa v0.8.0
[INFO] [stderr]    Compiling structopt v0.3.15
[INFO] [stderr]    Compiling three-edge-connected v0.1.0
[INFO] [stderr]    Compiling saboten v0.0.2
[INFO] [stderr]    Compiling handlegraph v0.5.0
[INFO] [stderr]    Compiling gfautil v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 41s
[INFO] running `Command { std: "docker" "inspect" "1074e53999ba4a480f0a437fe79eb5d424a018125429208e2088412d0d10a619", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1074e53999ba4a480f0a437fe79eb5d424a018125429208e2088412d0d10a619", kill_on_drop: false }`
[INFO] [stdout] 1074e53999ba4a480f0a437fe79eb5d424a018125429208e2088412d0d10a619
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4acb8905e44def2eba156802f784eb6ec13dbe98ec10779724f5e5ffda817d5d
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "4acb8905e44def2eba156802f784eb6ec13dbe98ec10779724f5e5ffda817d5d", kill_on_drop: false }`
[INFO] [stderr]    Compiling gfautil v0.3.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 8.04s
[INFO] running `Command { std: "docker" "inspect" "4acb8905e44def2eba156802f784eb6ec13dbe98ec10779724f5e5ffda817d5d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4acb8905e44def2eba156802f784eb6ec13dbe98ec10779724f5e5ffda817d5d", kill_on_drop: false }`
[INFO] [stdout] 4acb8905e44def2eba156802f784eb6ec13dbe98ec10779724f5e5ffda817d5d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 7091881c6bc511b5bc724c0dc37848596fee8ec6ac4a0e868465e98f87c37bbf
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "7091881c6bc511b5bc724c0dc37848596fee8ec6ac4a0e868465e98f87c37bbf", kill_on_drop: false }`
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.38s
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/gfautil-f9be4b932bf01423
[INFO] [stdout] running 2 tests
[INFO] [stdout] test commands::convert_names::tests::name_map_path_correct ... ok
[INFO] [stdout] test commands::convert_names::tests::converted_gfa_path_correct ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 2 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/gfautil-a502ee12fa75f6cb
[INFO] [stdout] 
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/gaf_convert-d9eb8cc9b80577a4
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stderr]    Doc-tests gfautil
[INFO] [stdout] test gafpaf_dels ... ok
[INFO] [stdout] test gafpaf_no_overlaps ... ok
[INFO] [stdout] test gafpaf_overlaps ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "7091881c6bc511b5bc724c0dc37848596fee8ec6ac4a0e868465e98f87c37bbf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "7091881c6bc511b5bc724c0dc37848596fee8ec6ac4a0e868465e98f87c37bbf", kill_on_drop: false }`
[INFO] [stdout] 7091881c6bc511b5bc724c0dc37848596fee8ec6ac4a0e868465e98f87c37bbf
