[INFO] cloning repository https://github.com/bihealth/var-agg
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/bihealth/var-agg" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbihealth%2Fvar-agg", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbihealth%2Fvar-agg'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 471f9e96eaae18d5d3b9ded56b29fc186f420178
[INFO] testing bihealth/var-agg against beta-2020-10-09 for beta-1.48-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbihealth%2Fvar-agg" "/workspace/builds/worker-3/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/bihealth/var-agg on toolchain beta-2020-10-09
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/bihealth/var-agg
[INFO] finished tweaking git repo https://github.com/bihealth/var-agg
[INFO] tweaked toml for git repo https://github.com/bihealth/var-agg written to /workspace/builds/worker-3/source/Cargo.toml
[INFO] crate git repo https://github.com/bihealth/var-agg already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] a157f0b029c054f73421646e28b8e3edfbe6780406eef88004a6b26517f31a54
[INFO] running `Command { std: "docker" "start" "-a" "a157f0b029c054f73421646e28b8e3edfbe6780406eef88004a6b26517f31a54", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a157f0b029c054f73421646e28b8e3edfbe6780406eef88004a6b26517f31a54", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a157f0b029c054f73421646e28b8e3edfbe6780406eef88004a6b26517f31a54", kill_on_drop: false }`
[INFO] [stdout] a157f0b029c054f73421646e28b8e3edfbe6780406eef88004a6b26517f31a54
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 906b139f2f48e047cefbc485ff7d2a47b736928ef0819ba543da6308b98b1040
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "906b139f2f48e047cefbc485ff7d2a47b736928ef0819ba543da6308b98b1040", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v0.4.17
[INFO] [stderr]    Compiling serde v1.0.76
[INFO] [stderr]    Compiling cc v1.0.23
[INFO] [stderr]    Compiling regex v1.0.4
[INFO] [stderr]    Compiling bindgen v0.36.1
[INFO] [stderr]    Compiling termcolor v1.0.3
[INFO] [stderr]    Compiling ndarray v0.9.1
[INFO] [stderr]    Compiling bv v0.7.4
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling slog v2.3.3
[INFO] [stderr]    Compiling bytecount v0.3.2
[INFO] [stderr]    Compiling linear-map v1.2.0
[INFO] [stderr]    Compiling ieee754 v0.2.2
[INFO] [stderr]    Compiling fs-utils v1.1.0
[INFO] [stderr]    Compiling memchr v1.0.2
[INFO] [stderr]    Compiling which v1.0.5
[INFO] [stderr]    Compiling isatty v0.1.8
[INFO] [stderr]    Compiling clang-sys v0.22.0
[INFO] [stderr]    Compiling proc-macro2 v0.3.5
[INFO] [stderr]    Compiling itertools v0.6.5
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling csv-core v0.1.4
[INFO] [stderr]    Compiling nom v3.2.1
[INFO] [stderr]    Compiling statrs v0.9.0
[INFO] [stderr]    Compiling itertools-num v0.1.2
[INFO] [stderr]    Compiling url v1.7.1
[INFO] [stderr]    Compiling chrono v0.4.6
[INFO] [stderr]    Compiling quote v0.5.2
[INFO] [stderr]    Compiling regex v0.2.11
[INFO] [stderr]    Compiling slog-async v2.3.0
[INFO] [stderr]    Compiling libloading v0.5.0
[INFO] [stderr]    Compiling backtrace-sys v0.1.24
[INFO] [stderr]    Compiling quote v0.6.8
[INFO] [stderr]    Compiling syn v0.14.9
[INFO] [stderr]    Compiling slog-term v2.4.0
[INFO] [stderr]    Compiling cexpr v0.2.3
[INFO] [stderr]    Compiling backtrace v0.3.9
[INFO] [stderr]    Compiling error-chain v0.12.0
[INFO] [stderr]    Compiling env_logger v0.5.13
[INFO] [stderr]    Compiling serde_derive v1.0.76
[INFO] [stderr]    Compiling vec_map v0.8.1
[INFO] [stderr]    Compiling bio-types v0.2.0
[INFO] [stderr]    Compiling multimap v0.4.0
[INFO] [stderr]    Compiling csv v1.0.1
[INFO] [stderr]    Compiling clap v2.32.0
[INFO] [stderr]    Compiling bio v0.22.0
[INFO] [stderr]    Compiling rust-htslib v0.21.0
[INFO] [stderr]    Compiling var-agg v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: the item `rust_htslib` is imported redundantly
[INFO] [stdout]   --> src/bcf_utils.rs:14:13
[INFO] [stdout]    |
[INFO] [stdout] 4  | use rust_htslib;
[INFO] [stdout]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stdout] ...
[INFO] [stdout] 14 |         use rust_htslib;
[INFO] [stdout]    |             ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `ffi` is imported redundantly
[INFO] [stdout]   --> src/bcf_utils.rs:15:13
[INFO] [stdout]    |
[INFO] [stdout] 5  | use std::ffi;
[INFO] [stdout]    |     -------- the item `ffi` is already imported here
[INFO] [stdout] ...
[INFO] [stdout] 15 |         use std::ffi;
[INFO] [stdout]    |             ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 3m 04s
[INFO] running `Command { std: "docker" "inspect" "906b139f2f48e047cefbc485ff7d2a47b736928ef0819ba543da6308b98b1040", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "906b139f2f48e047cefbc485ff7d2a47b736928ef0819ba543da6308b98b1040", kill_on_drop: false }`
[INFO] [stdout] 906b139f2f48e047cefbc485ff7d2a47b736928ef0819ba543da6308b98b1040
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] fd2f4dea32503d0f4178b1751e50728462eae8a71cec73bc0c5e994a03319363
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "fd2f4dea32503d0f4178b1751e50728462eae8a71cec73bc0c5e994a03319363", kill_on_drop: false }`
[INFO] [stderr]    Compiling var-agg v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: the item `rust_htslib` is imported redundantly
[INFO] [stdout]   --> src/bcf_utils.rs:14:13
[INFO] [stdout]    |
[INFO] [stdout] 4  | use rust_htslib;
[INFO] [stdout]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stdout] ...
[INFO] [stdout] 14 |         use rust_htslib;
[INFO] [stdout]    |             ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: the item `ffi` is imported redundantly
[INFO] [stdout]   --> src/bcf_utils.rs:15:13
[INFO] [stdout]    |
[INFO] [stdout] 5  | use std::ffi;
[INFO] [stdout]    |     -------- the item `ffi` is already imported here
[INFO] [stdout] ...
[INFO] [stdout] 15 |         use std::ffi;
[INFO] [stdout]    |             ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 2.00s
[INFO] running `Command { std: "docker" "inspect" "fd2f4dea32503d0f4178b1751e50728462eae8a71cec73bc0c5e994a03319363", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "fd2f4dea32503d0f4178b1751e50728462eae8a71cec73bc0c5e994a03319363", kill_on_drop: false }`
[INFO] [stdout] fd2f4dea32503d0f4178b1751e50728462eae8a71cec73bc0c5e994a03319363
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] bf93e7278a27aa56a87ce685f031fb6dd6ac86c80ccc0cf21bd8400152d20476
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "bf93e7278a27aa56a87ce685f031fb6dd6ac86c80ccc0cf21bd8400152d20476", kill_on_drop: false }`
[INFO] [stderr] warning: the item `rust_htslib` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:14:13
[INFO] [stderr]    |
[INFO] [stderr] 4  | use rust_htslib;
[INFO] [stderr]    |     ----------- the item `rust_htslib` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 14 |         use rust_htslib;
[INFO] [stderr]    |             ^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: the item `ffi` is imported redundantly
[INFO] [stderr]   --> src/bcf_utils.rs:15:13
[INFO] [stderr]    |
[INFO] [stderr] 5  | use std::ffi;
[INFO] [stderr]    |     -------- the item `ffi` is already imported here
[INFO] [stderr] ...
[INFO] [stderr] 15 |         use std::ffi;
[INFO] [stderr]    |             ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: 2 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.35s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/var_agg-8e15440dab3e4ad0
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "bf93e7278a27aa56a87ce685f031fb6dd6ac86c80ccc0cf21bd8400152d20476", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bf93e7278a27aa56a87ce685f031fb6dd6ac86c80ccc0cf21bd8400152d20476", kill_on_drop: false }`
[INFO] [stdout] bf93e7278a27aa56a87ce685f031fb6dd6ac86c80ccc0cf21bd8400152d20476
