[INFO] fetching crate fmlrc 0.1.2...
[INFO] testing fmlrc-0.1.2 against 1.47.0 for beta-1.48-1
[INFO] extracting crate fmlrc 0.1.2 into /workspace/builds/worker-5/source
[INFO] validating manifest of crates.io crate fmlrc 0.1.2 on toolchain 1.47.0
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate fmlrc 0.1.2
[INFO] finished tweaking crates.io crate fmlrc 0.1.2
[INFO] tweaked toml for crates.io crate fmlrc 0.1.2 written to /workspace/builds/worker-5/source/Cargo.toml
[INFO] crate crates.io crate fmlrc 0.1.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+1.47.0" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] f91e61378b7a03243aab6e77dec6f707eccc03fca56624b9989625a548d8b523
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "f91e61378b7a03243aab6e77dec6f707eccc03fca56624b9989625a548d8b523", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f91e61378b7a03243aab6e77dec6f707eccc03fca56624b9989625a548d8b523", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f91e61378b7a03243aab6e77dec6f707eccc03fca56624b9989625a548d8b523", kill_on_drop: false }`
[INFO] [stdout] f91e61378b7a03243aab6e77dec6f707eccc03fca56624b9989625a548d8b523
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] de9a2084e492ad103284f8096c91d456cf08f32a74801b4edaf876eff56783a5
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "de9a2084e492ad103284f8096c91d456cf08f32a74801b4edaf876eff56783a5", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]    Compiling syn v1.0.43
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling bit-vec v0.6.2
[INFO] [stderr]    Compiling bio v0.31.0
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling exitcode v1.1.2
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling bzip2-sys v0.1.9+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.16
[INFO] [stderr]    Compiling subprocess v0.2.6
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling ordered-float v1.1.0
[INFO] [stderr]    Compiling threadpool v1.8.1
[INFO] [stderr]    Compiling env_logger v0.7.1
[INFO] [stderr]    Compiling libmath v0.1.4
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling xz2 v0.1.6
[INFO] [stderr]    Compiling bzip2 v0.3.3
[INFO] [stderr]    Compiling needletail v0.3.2
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling snafu-derive v0.6.9
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling snafu v0.6.9
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling multimap v0.6.0
[INFO] [stderr]    Compiling serde_json v1.0.58
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling fmlrc v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 1m 30s
[INFO] running `Command { std: "docker" "inspect" "de9a2084e492ad103284f8096c91d456cf08f32a74801b4edaf876eff56783a5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "de9a2084e492ad103284f8096c91d456cf08f32a74801b4edaf876eff56783a5", kill_on_drop: false }`
[INFO] [stdout] de9a2084e492ad103284f8096c91d456cf08f32a74801b4edaf876eff56783a5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 692fad3350b5583c44ebddd6820423cf52ecdd37784ec86ede785d70a514dc07
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "692fad3350b5583c44ebddd6820423cf52ecdd37784ec86ede785d70a514dc07", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde_cbor v0.11.1
[INFO] [stderr]    Compiling tinytemplate v1.1.0
[INFO] [stderr]    Compiling criterion v0.3.3
[INFO] [stderr]    Compiling fmlrc v0.1.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 26.01s
[INFO] running `Command { std: "docker" "inspect" "692fad3350b5583c44ebddd6820423cf52ecdd37784ec86ede785d70a514dc07", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "692fad3350b5583c44ebddd6820423cf52ecdd37784ec86ede785d70a514dc07", kill_on_drop: false }`
[INFO] [stdout] 692fad3350b5583c44ebddd6820423cf52ecdd37784ec86ede785d70a514dc07
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+1.47.0" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] 42509b8586eaa2bad13ae79d85fd974f1e9b68bc8c601469b809bfa90fa68637
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "42509b8586eaa2bad13ae79d85fd974f1e9b68bc8c601469b809bfa90fa68637", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.77s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/fmlrc-5a3d134cdcbfa0f0
[INFO] [stdout] 
[INFO] [stdout] running 28 tests
[INFO] [stdout] test bwt_converter::tests::test_convert_to_vec ... ok
[INFO] [stdout] test bwt_converter::tests::test_newline ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_indexing ... ok
[INFO] [stdout] test bwt_converter::tests::test_compression ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_allocation ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_rank ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_offset ... ok
[INFO] [stdout] test indexed_bit_vec::tests::test_set_bit ... ok
[INFO] [stdout] test ropebwt2_util::tests::test_from_fastqs ... ignored
[INFO] [stdout] test ropebwt2_util::tests::test_from_strings ... ignored
[INFO] [stdout] test stats_util::tests::test_median ... ok
[INFO] [stdout] test string_util::tests::test_convert_itos ... ok
[INFO] [stdout] test ordered_fasta_writer::tests::test_fasta_writing ... ok
[INFO] [stdout] test bwt_converter::tests::test_save_bwt_numpy ... ok
[INFO] [stdout] test read_correction::tests::test_triple_accel ... ok
[INFO] [stdout] test string_util::tests::test_convert_stoi ... ok
[INFO] [stdout] test string_util::tests::test_simple_index ... ok
[INFO] [stdout] test bv_bwt::tests::test_load_from_file ... FAILED
[INFO] [stdout] test bv_bwt::tests::test_simple_index ... ok
[INFO] [stdout] test bv_bwt::tests::test_simple_pileup ... ok
[INFO] [stdout] test bwt_converter::tests::test_bwt_conversion ... test bwt_converter::tests::test_bwt_conversion has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_deletion_special ... test read_correction::tests::test_correction_deletion_special has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_bridge ... test read_correction::tests::test_bridge has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_assemble ... test read_correction::tests::test_assemble has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_job ... test read_correction::tests::test_correction_job has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_correction_pass ... test read_correction::tests::test_correction_pass has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_diploid_correction_pass ... test read_correction::tests::test_diploid_correction_pass has been running for over 60 seconds
[INFO] [stdout] test read_correction::tests::test_expansion_bridge ... test read_correction::tests::test_expansion_bridge has been running for over 60 seconds
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "42509b8586eaa2bad13ae79d85fd974f1e9b68bc8c601469b809bfa90fa68637", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "42509b8586eaa2bad13ae79d85fd974f1e9b68bc8c601469b809bfa90fa68637", kill_on_drop: false }`
[INFO] [stdout] 42509b8586eaa2bad13ae79d85fd974f1e9b68bc8c601469b809bfa90fa68637
