[INFO] fetching crate bdb 0.0.1...
[INFO] testing bdb-0.0.1 against beta-2020-10-09 for beta-1.48-1
[INFO] extracting crate bdb 0.0.1 into /workspace/builds/worker-1/source
[INFO] validating manifest of crates.io crate bdb 0.0.1 on toolchain beta-2020-10-09
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "read-manifest" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] started tweaking crates.io crate bdb 0.0.1
[INFO] finished tweaking crates.io crate bdb 0.0.1
[INFO] tweaked toml for crates.io crate bdb 0.0.1 written to /workspace/builds/worker-1/source/Cargo.toml
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "generate-lockfile" "--manifest-path" "Cargo.toml" "-Zno-index-update", kill_on_drop: false }`
[INFO] running `Command { std: "/workspace/cargo-home/bin/cargo" "+beta-2020-10-09" "fetch" "--locked" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ref_slice v1.2.0
[INFO] [stderr]   Downloaded quick-xml v0.12.4
[INFO] [stderr]   Downloaded digit_group v0.1.0
[INFO] [stderr]   Downloaded numpress v1.1.0
[INFO] [stderr]   Downloaded openssl-src v111.12.0+1.1.1h
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 3efab7efc9a86ba1c66416fdfdff34c70207ea1690d41123d8ee01e61c0a2f5b
[INFO] running `Command { std: "docker" "start" "-a" "3efab7efc9a86ba1c66416fdfdff34c70207ea1690d41123d8ee01e61c0a2f5b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "3efab7efc9a86ba1c66416fdfdff34c70207ea1690d41123d8ee01e61c0a2f5b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "3efab7efc9a86ba1c66416fdfdff34c70207ea1690d41123d8ee01e61c0a2f5b", kill_on_drop: false }`
[INFO] [stdout] 3efab7efc9a86ba1c66416fdfdff34c70207ea1690d41123d8ee01e61c0a2f5b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "build" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 4506f2da61ec05e5ff0bdbbe899f5acd2abf4d49c8cf11fbabc64385cf456c8e
[INFO] running `Command { std: "docker" "start" "-a" "4506f2da61ec05e5ff0bdbbe899f5acd2abf4d49c8cf11fbabc64385cf456c8e", kill_on_drop: false }`
[INFO] [stderr]    Compiling openssl v0.10.30
[INFO] [stderr]    Compiling encoding_rs v0.8.24
[INFO] [stderr]    Compiling try-lock v0.2.3
[INFO] [stderr]    Compiling mime v0.3.16
[INFO] [stderr]    Compiling dtoa v0.4.6
[INFO] [stderr]    Compiling ref_slice v1.2.0
[INFO] [stderr]    Compiling numpress v1.1.0
[INFO] [stderr]    Compiling digit_group v0.1.0
[INFO] [stderr]    Compiling error-chain v0.12.4
[INFO] [stderr]    Compiling openssl-src v111.12.0+1.1.1h
[INFO] [stderr]    Compiling try_from v0.3.2
[INFO] [stderr]    Compiling idna v0.2.0
[INFO] [stderr]    Compiling hyper v0.12.35
[INFO] [stderr]    Compiling flate2 v1.0.18
[INFO] [stderr]    Compiling mime_guess v2.0.3
[INFO] [stderr]    Compiling bytes v0.4.12
[INFO] [stderr]    Compiling futures-cpupool v0.1.8
[INFO] [stderr]    Compiling cookie v0.12.0
[INFO] [stderr]    Compiling want v0.2.0
[INFO] [stderr]    Compiling serde_derive v1.0.117
[INFO] [stderr]    Compiling uuid v0.7.4
[INFO] [stderr]    Compiling openssl-sys v0.9.58
[INFO] [stderr]    Compiling tokio-io v0.1.13
[INFO] [stderr]    Compiling http v0.1.21
[INFO] [stderr]    Compiling tokio-buf v0.1.1
[INFO] [stderr]    Compiling string v0.2.1
[INFO] [stderr]    Compiling url v2.1.1
[INFO] [stderr]    Compiling tokio-reactor v0.1.12
[INFO] [stderr]    Compiling tokio-tcp v0.1.4
[INFO] [stderr]    Compiling quick-xml v0.12.4
[INFO] [stderr]    Compiling publicsuffix v1.5.4
[INFO] [stderr]    Compiling tokio v0.1.22
[INFO] [stderr]    Compiling http-body v0.1.0
[INFO] [stderr]    Compiling h2 v0.1.26
[INFO] [stderr]    Compiling serde v1.0.117
[INFO] [stderr]    Compiling serde_json v1.0.59
[INFO] [stderr]    Compiling serde_urlencoded v0.5.5
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling cookie_store v0.7.0
[INFO] [stderr]    Compiling native-tls v0.2.4
[INFO] [stderr]    Compiling hyper-tls v0.3.2
[INFO] [stderr]    Compiling reqwest v0.9.24
[INFO] [stderr]    Compiling bdb v0.0.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]  --> src/util/alias.rs:9:26
[INFO] [stdout]   |
[INFO] [stdout] 9 | pub type ErrorType = Box<StdError>;
[INFO] [stdout]   |                          ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/util/error.rs:168:32
[INFO] [stdout]     |
[INFO] [stdout] 168 |     fn cause(&self) -> Option<&StdError> {
[INFO] [stdout]     |                                ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/mass_spectra/complete.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             self.is_valid() &&
[INFO] [stdout] 13 | |             self.ms_level != 0 &&
[INFO] [stdout] 14 | |             !self.filter.is_empty()
[INFO] [stdout] 15 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         self.is_valid() &&
[INFO] [stdout] 12 |             self.ms_level != 0 &&
[INFO] [stdout] 13 |             !self.filter.is_empty()
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/mass_spectra/valid.rs:9:9
[INFO] [stdout]    |
[INFO] [stdout] 9  | /         (
[INFO] [stdout] 10 | |             self.num != 0 &&
[INFO] [stdout] 11 | |             self.rt >= 0.0 &&
[INFO] [stdout] 12 | |             !self.peaks.is_empty() &&
[INFO] [stdout] ...  |
[INFO] [stdout] 30 | |             )
[INFO] [stdout] 31 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 9  |         self.num != 0 &&
[INFO] [stdout] 10 |             self.rt >= 0.0 &&
[INFO] [stdout] 11 |             !self.peaks.is_empty() &&
[INFO] [stdout] 12 |             // If the MS level is 2 or higher, check the parents are set.
[INFO] [stdout] 13 |             (
[INFO] [stdout] 14 |                 (
[INFO] [stdout]  ...
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/sra/complete.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             self.is_valid() &&
[INFO] [stdout] 13 | |             !self.description.is_empty()
[INFO] [stdout] 14 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         self.is_valid() &&
[INFO] [stdout] 12 |             !self.description.is_empty()
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/sra/valid.rs:10:9
[INFO] [stdout]    |
[INFO] [stdout] 10 | /         (
[INFO] [stdout] 11 | |             !self.seq_id.is_empty() &&
[INFO] [stdout] 12 | |             self.length as usize == self.sequence.len() &&
[INFO] [stdout] 13 | |             self.length as usize == self.quality.len() &&
[INFO] [stdout] 14 | |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stdout] 15 | |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stdout] 16 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 10 |         !self.seq_id.is_empty() &&
[INFO] [stdout] 11 |             self.length as usize == self.sequence.len() &&
[INFO] [stdout] 12 |             self.length as usize == self.quality.len() &&
[INFO] [stdout] 13 |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stdout] 14 |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/uniprot/complete.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             self.is_valid() &&
[INFO] [stdout] 13 | |             !self.proteome.is_empty() &&
[INFO] [stdout] 14 | |             !self.taxonomy.is_empty()
[INFO] [stdout] 15 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         self.is_valid() &&
[INFO] [stdout] 12 |             !self.proteome.is_empty() &&
[INFO] [stdout] 13 |             !self.taxonomy.is_empty()
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/uniprot/valid.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             // Do not try to validate the Organism
[INFO] [stdout] 13 | |             // With virus names being non-standard, it is impossible
[INFO] [stdout] 14 | |             // with an NFA, and extremely time complex otherwise.
[INFO] [stdout] ...  |
[INFO] [stdout] 33 | |             )
[INFO] [stdout] 34 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         // Do not try to validate the Organism
[INFO] [stdout] 12 |             // With virus names being non-standard, it is impossible
[INFO] [stdout] 13 |             // with an NFA, and extremely time complex otherwise.
[INFO] [stdout] 14 |             self.sequence_version > 0 &&
[INFO] [stdout] 15 |             self.protein_evidence < ProteinEvidence::Unknown &&
[INFO] [stdout] 16 |             self.mass > 0 &&
[INFO] [stdout]  ...
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:112:45
[INFO] [stdout]     |
[INFO] [stdout] 112 |         write!(f, "UniProt error: {}", self.description())
[INFO] [stdout]     |                                             ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:144:43
[INFO] [stdout]     |
[INFO] [stdout] 144 |             ErrorKind::Io(ref err) => err.description(),
[INFO] [stdout]     |                                           ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:145:45
[INFO] [stdout]     |
[INFO] [stdout] 145 |             ErrorKind::Utf8(ref err) => err.description(),
[INFO] [stdout]     |                                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:146:49
[INFO] [stdout]     |
[INFO] [stdout] 146 |             ErrorKind::FromUtf8(ref err) => err.description(),
[INFO] [stdout]     |                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:147:49
[INFO] [stdout]     |
[INFO] [stdout] 147 |             ErrorKind::ParseInt(ref err) => err.description(),
[INFO] [stdout]     |                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:151:42
[INFO] [stdout]     |
[INFO] [stdout] 151 |                 XmlError::Io(ref e) => e.description(),
[INFO] [stdout]     |                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:152:44
[INFO] [stdout]     |
[INFO] [stdout] 152 |                 XmlError::Utf8(ref e) => e.description(),
[INFO] [stdout]     |                                            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 15 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished dev [unoptimized + debuginfo] target(s) in 2m 16s
[INFO] running `Command { std: "docker" "inspect" "4506f2da61ec05e5ff0bdbbe899f5acd2abf4d49c8cf11fbabc64385cf456c8e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4506f2da61ec05e5ff0bdbbe899f5acd2abf4d49c8cf11fbabc64385cf456c8e", kill_on_drop: false }`
[INFO] [stdout] 4506f2da61ec05e5ff0bdbbe899f5acd2abf4d49c8cf11fbabc64385cf456c8e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen" "--no-run" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] [stdout] 68309f66047129af0fa1e47a99f39df1f21f3f5a9e25af47677ed9bd880695e3
[INFO] running `Command { std: "docker" "start" "-a" "68309f66047129af0fa1e47a99f39df1f21f3f5a9e25af47677ed9bd880695e3", kill_on_drop: false }`
[INFO] [stderr]    Compiling assert_approx_eq v1.1.0
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]  --> src/util/alias.rs:9:26
[INFO] [stdout]   |
[INFO] [stdout] 9 | pub type ErrorType = Box<StdError>;
[INFO] [stdout]   |                          ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/util/error.rs:168:32
[INFO] [stdout]     |
[INFO] [stdout] 168 |     fn cause(&self) -> Option<&StdError> {
[INFO] [stdout]     |                                ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/mass_spectra/complete.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             self.is_valid() &&
[INFO] [stdout] 13 | |             self.ms_level != 0 &&
[INFO] [stdout] 14 | |             !self.filter.is_empty()
[INFO] [stdout] 15 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         self.is_valid() &&
[INFO] [stdout] 12 |             self.ms_level != 0 &&
[INFO] [stdout] 13 |             !self.filter.is_empty()
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/mass_spectra/valid.rs:9:9
[INFO] [stdout]    |
[INFO] [stdout] 9  | /         (
[INFO] [stdout] 10 | |             self.num != 0 &&
[INFO] [stdout] 11 | |             self.rt >= 0.0 &&
[INFO] [stdout] 12 | |             !self.peaks.is_empty() &&
[INFO] [stdout] ...  |
[INFO] [stdout] 30 | |             )
[INFO] [stdout] 31 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 9  |         self.num != 0 &&
[INFO] [stdout] 10 |             self.rt >= 0.0 &&
[INFO] [stdout] 11 |             !self.peaks.is_empty() &&
[INFO] [stdout] 12 |             // If the MS level is 2 or higher, check the parents are set.
[INFO] [stdout] 13 |             (
[INFO] [stdout] 14 |                 (
[INFO] [stdout]  ...
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/sra/complete.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             self.is_valid() &&
[INFO] [stdout] 13 | |             !self.description.is_empty()
[INFO] [stdout] 14 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         self.is_valid() &&
[INFO] [stdout] 12 |             !self.description.is_empty()
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/sra/valid.rs:10:9
[INFO] [stdout]    |
[INFO] [stdout] 10 | /         (
[INFO] [stdout] 11 | |             !self.seq_id.is_empty() &&
[INFO] [stdout] 12 | |             self.length as usize == self.sequence.len() &&
[INFO] [stdout] 13 | |             self.length as usize == self.quality.len() &&
[INFO] [stdout] 14 | |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stdout] 15 | |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stdout] 16 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 10 |         !self.seq_id.is_empty() &&
[INFO] [stdout] 11 |             self.length as usize == self.sequence.len() &&
[INFO] [stdout] 12 |             self.length as usize == self.quality.len() &&
[INFO] [stdout] 13 |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stdout] 14 |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/uniprot/complete.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             self.is_valid() &&
[INFO] [stdout] 13 | |             !self.proteome.is_empty() &&
[INFO] [stdout] 14 | |             !self.taxonomy.is_empty()
[INFO] [stdout] 15 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         self.is_valid() &&
[INFO] [stdout] 12 |             !self.proteome.is_empty() &&
[INFO] [stdout] 13 |             !self.taxonomy.is_empty()
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/uniprot/valid.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             // Do not try to validate the Organism
[INFO] [stdout] 13 | |             // With virus names being non-standard, it is impossible
[INFO] [stdout] 14 | |             // with an NFA, and extremely time complex otherwise.
[INFO] [stdout] ...  |
[INFO] [stdout] 33 | |             )
[INFO] [stdout] 34 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         // Do not try to validate the Organism
[INFO] [stdout] 12 |             // With virus names being non-standard, it is impossible
[INFO] [stdout] 13 |             // with an NFA, and extremely time complex otherwise.
[INFO] [stdout] 14 |             self.sequence_version > 0 &&
[INFO] [stdout] 15 |             self.protein_evidence < ProteinEvidence::Unknown &&
[INFO] [stdout] 16 |             self.mass > 0 &&
[INFO] [stdout]  ...
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:112:45
[INFO] [stdout]     |
[INFO] [stdout] 112 |         write!(f, "UniProt error: {}", self.description())
[INFO] [stdout]     |                                             ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:144:43
[INFO] [stdout]     |
[INFO] [stdout] 144 |             ErrorKind::Io(ref err) => err.description(),
[INFO] [stdout]     |                                           ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:145:45
[INFO] [stdout]     |
[INFO] [stdout] 145 |             ErrorKind::Utf8(ref err) => err.description(),
[INFO] [stdout]     |                                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:146:49
[INFO] [stdout]     |
[INFO] [stdout] 146 |             ErrorKind::FromUtf8(ref err) => err.description(),
[INFO] [stdout]     |                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:147:49
[INFO] [stdout]     |
[INFO] [stdout] 147 |             ErrorKind::ParseInt(ref err) => err.description(),
[INFO] [stdout]     |                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:151:42
[INFO] [stdout]     |
[INFO] [stdout] 151 |                 XmlError::Io(ref e) => e.description(),
[INFO] [stdout]     |                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:152:44
[INFO] [stdout]     |
[INFO] [stdout] 152 |                 XmlError::Utf8(ref e) => e.description(),
[INFO] [stdout]     |                                            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 15 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]    Compiling bdb v0.0.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]  --> src/util/alias.rs:9:26
[INFO] [stdout]   |
[INFO] [stdout] 9 | pub type ErrorType = Box<StdError>;
[INFO] [stdout]   |                          ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stdout]    --> src/util/error.rs:168:32
[INFO] [stdout]     |
[INFO] [stdout] 168 |     fn cause(&self) -> Option<&StdError> {
[INFO] [stdout]     |                                ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/mass_spectra/complete.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             self.is_valid() &&
[INFO] [stdout] 13 | |             self.ms_level != 0 &&
[INFO] [stdout] 14 | |             !self.filter.is_empty()
[INFO] [stdout] 15 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         self.is_valid() &&
[INFO] [stdout] 12 |             self.ms_level != 0 &&
[INFO] [stdout] 13 |             !self.filter.is_empty()
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/mass_spectra/valid.rs:9:9
[INFO] [stdout]    |
[INFO] [stdout] 9  | /         (
[INFO] [stdout] 10 | |             self.num != 0 &&
[INFO] [stdout] 11 | |             self.rt >= 0.0 &&
[INFO] [stdout] 12 | |             !self.peaks.is_empty() &&
[INFO] [stdout] ...  |
[INFO] [stdout] 30 | |             )
[INFO] [stdout] 31 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 9  |         self.num != 0 &&
[INFO] [stdout] 10 |             self.rt >= 0.0 &&
[INFO] [stdout] 11 |             !self.peaks.is_empty() &&
[INFO] [stdout] 12 |             // If the MS level is 2 or higher, check the parents are set.
[INFO] [stdout] 13 |             (
[INFO] [stdout] 14 |                 (
[INFO] [stdout]  ...
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/sra/complete.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             self.is_valid() &&
[INFO] [stdout] 13 | |             !self.description.is_empty()
[INFO] [stdout] 14 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         self.is_valid() &&
[INFO] [stdout] 12 |             !self.description.is_empty()
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/sra/valid.rs:10:9
[INFO] [stdout]    |
[INFO] [stdout] 10 | /         (
[INFO] [stdout] 11 | |             !self.seq_id.is_empty() &&
[INFO] [stdout] 12 | |             self.length as usize == self.sequence.len() &&
[INFO] [stdout] 13 | |             self.length as usize == self.quality.len() &&
[INFO] [stdout] 14 | |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stdout] 15 | |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stdout] 16 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 10 |         !self.seq_id.is_empty() &&
[INFO] [stdout] 11 |             self.length as usize == self.sequence.len() &&
[INFO] [stdout] 12 |             self.length as usize == self.quality.len() &&
[INFO] [stdout] 13 |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stdout] 14 |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/uniprot/complete.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             self.is_valid() &&
[INFO] [stdout] 13 | |             !self.proteome.is_empty() &&
[INFO] [stdout] 14 | |             !self.taxonomy.is_empty()
[INFO] [stdout] 15 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         self.is_valid() &&
[INFO] [stdout] 12 |             !self.proteome.is_empty() &&
[INFO] [stdout] 13 |             !self.taxonomy.is_empty()
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unnecessary parentheses around block return value
[INFO] [stdout]   --> src/db/uniprot/valid.rs:11:9
[INFO] [stdout]    |
[INFO] [stdout] 11 | /         (
[INFO] [stdout] 12 | |             // Do not try to validate the Organism
[INFO] [stdout] 13 | |             // With virus names being non-standard, it is impossible
[INFO] [stdout] 14 | |             // with an NFA, and extremely time complex otherwise.
[INFO] [stdout] ...  |
[INFO] [stdout] 33 | |             )
[INFO] [stdout] 34 | |         )
[INFO] [stdout]    | |_________^
[INFO] [stdout]    |
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]    |
[INFO] [stdout] 11 |         // Do not try to validate the Organism
[INFO] [stdout] 12 |             // With virus names being non-standard, it is impossible
[INFO] [stdout] 13 |             // with an NFA, and extremely time complex otherwise.
[INFO] [stdout] 14 |             self.sequence_version > 0 &&
[INFO] [stdout] 15 |             self.protein_evidence < ProteinEvidence::Unknown &&
[INFO] [stdout] 16 |             self.mass > 0 &&
[INFO] [stdout]  ...
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:112:45
[INFO] [stdout]     |
[INFO] [stdout] 112 |         write!(f, "UniProt error: {}", self.description())
[INFO] [stdout]     |                                             ^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(deprecated)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:144:43
[INFO] [stdout]     |
[INFO] [stdout] 144 |             ErrorKind::Io(ref err) => err.description(),
[INFO] [stdout]     |                                           ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:145:45
[INFO] [stdout]     |
[INFO] [stdout] 145 |             ErrorKind::Utf8(ref err) => err.description(),
[INFO] [stdout]     |                                             ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:146:49
[INFO] [stdout]     |
[INFO] [stdout] 146 |             ErrorKind::FromUtf8(ref err) => err.description(),
[INFO] [stdout]     |                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:147:49
[INFO] [stdout]     |
[INFO] [stdout] 147 |             ErrorKind::ParseInt(ref err) => err.description(),
[INFO] [stdout]     |                                                 ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:151:42
[INFO] [stdout]     |
[INFO] [stdout] 151 |                 XmlError::Io(ref e) => e.description(),
[INFO] [stdout]     |                                          ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stdout]    --> src/util/error.rs:152:44
[INFO] [stdout]     |
[INFO] [stdout] 152 |                 XmlError::Utf8(ref e) => e.description(),
[INFO] [stdout]     |                                            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: use of deprecated associated function `core::str::<impl str>::trim_right`: superseded by `trim_end`
[INFO] [stdout]    --> src/io/uniprot.rs:167:37
[INFO] [stdout]     |
[INFO] [stdout] 167 |         assert_eq!(expected, actual.trim_right());
[INFO] [stdout]     |                                     ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 16 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 15.96s
[INFO] running `Command { std: "docker" "inspect" "68309f66047129af0fa1e47a99f39df1f21f3f5a9e25af47677ed9bd880695e3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "68309f66047129af0fa1e47a99f39df1f21f3f5a9e25af47677ed9bd880695e3", kill_on_drop: false }`
[INFO] [stdout] 68309f66047129af0fa1e47a99f39df1f21f3f5a9e25af47677ed9bd880695e3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "rustops/crates-build-env@sha256:d92eaeed33fa75130ca1ee6c8a01d1ffb62bac859dfdfb3450e3e5d1c0146529" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2020-10-09" "test" "--frozen", kill_on_drop: false }`
[INFO] [stdout] d809be76ca4c40267fb5892126e432082fd13c97887373636eb75e224b8f6cce
[INFO] [stderr] WARNING: Your kernel does not support swap limit capabilities or the cgroup is not mounted. Memory limited without swap.
[INFO] running `Command { std: "docker" "start" "-a" "d809be76ca4c40267fb5892126e432082fd13c97887373636eb75e224b8f6cce", kill_on_drop: false }`
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]  --> src/util/alias.rs:9:26
[INFO] [stderr]   |
[INFO] [stderr] 9 | pub type ErrorType = Box<StdError>;
[INFO] [stderr]   |                          ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/util/error.rs:168:32
[INFO] [stderr]     |
[INFO] [stderr] 168 |     fn cause(&self) -> Option<&StdError> {
[INFO] [stderr]     |                                ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/mass_spectra/complete.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             self.is_valid() &&
[INFO] [stderr] 13 | |             self.ms_level != 0 &&
[INFO] [stderr] 14 | |             !self.filter.is_empty()
[INFO] [stderr] 15 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         self.is_valid() &&
[INFO] [stderr] 12 |             self.ms_level != 0 &&
[INFO] [stderr] 13 |             !self.filter.is_empty()
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/mass_spectra/valid.rs:9:9
[INFO] [stderr]    |
[INFO] [stderr] 9  | /         (
[INFO] [stderr] 10 | |             self.num != 0 &&
[INFO] [stderr] 11 | |             self.rt >= 0.0 &&
[INFO] [stderr] 12 | |             !self.peaks.is_empty() &&
[INFO] [stderr] ...  |
[INFO] [stderr] 30 | |             )
[INFO] [stderr] 31 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 9  |         self.num != 0 &&
[INFO] [stderr] 10 |             self.rt >= 0.0 &&
[INFO] [stderr] 11 |             !self.peaks.is_empty() &&
[INFO] [stderr] 12 |             // If the MS level is 2 or higher, check the parents are set.
[INFO] [stderr] 13 |             (
[INFO] [stderr] 14 |                 (
[INFO] [stderr]  ...
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]  --> src/util/alias.rs:9:26
[INFO] [stderr]   |
[INFO] [stderr] 9 | pub type ErrorType = Box<StdError>;
[INFO] [stderr]   |                          ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(bare_trait_objects)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: trait objects without an explicit `dyn` are deprecated
[INFO] [stderr]    --> src/util/error.rs:168:32
[INFO] [stderr]     |
[INFO] [stderr] 168 |     fn cause(&self) -> Option<&StdError> {
[INFO] [stderr]     |                                ^^^^^^^^ help: use `dyn`: `dyn StdError`
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/mass_spectra/complete.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             self.is_valid() &&
[INFO] [stderr] 13 | |             self.ms_level != 0 &&
[INFO] [stderr] 14 | |             !self.filter.is_empty()
[INFO] [stderr] 15 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         self.is_valid() &&
[INFO] [stderr] 12 |             self.ms_level != 0 &&
[INFO] [stderr] 13 |             !self.filter.is_empty()
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/mass_spectra/valid.rs:9:9
[INFO] [stderr]    |
[INFO] [stderr] 9  | /         (
[INFO] [stderr] 10 | |             self.num != 0 &&
[INFO] [stderr] 11 | |             self.rt >= 0.0 &&
[INFO] [stderr] 12 | |             !self.peaks.is_empty() &&
[INFO] [stderr] ...  |
[INFO] [stderr] 30 | |             )
[INFO] [stderr] 31 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 9  |         self.num != 0 &&
[INFO] [stderr] 10 |             self.rt >= 0.0 &&
[INFO] [stderr] 11 |             !self.peaks.is_empty() &&
[INFO] [stderr] 12 |             // If the MS level is 2 or higher, check the parents are set.
[INFO] [stderr] 13 |             (
[INFO] [stderr] 14 |                 (
[INFO] [stderr]  ...
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/sra/complete.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             self.is_valid() &&
[INFO] [stderr] 13 | |             !self.description.is_empty()
[INFO] [stderr] 14 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         self.is_valid() &&
[INFO] [stderr] 12 |             !self.description.is_empty()
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/sra/valid.rs:10:9
[INFO] [stderr]    |
[INFO] [stderr] 10 | /         (
[INFO] [stderr] 11 | |             !self.seq_id.is_empty() &&
[INFO] [stderr] 12 | |             self.length as usize == self.sequence.len() &&
[INFO] [stderr] 13 | |             self.length as usize == self.quality.len() &&
[INFO] [stderr] 14 | |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stderr] 15 | |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stderr] 16 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 10 |         !self.seq_id.is_empty() &&
[INFO] [stderr] 11 |             self.length as usize == self.sequence.len() &&
[INFO] [stderr] 12 |             self.length as usize == self.quality.len() &&
[INFO] [stderr] 13 |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stderr] 14 |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/uniprot/complete.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             self.is_valid() &&
[INFO] [stderr] 13 | |             !self.proteome.is_empty() &&
[INFO] [stderr] 14 | |             !self.taxonomy.is_empty()
[INFO] [stderr] 15 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         self.is_valid() &&
[INFO] [stderr] 12 |             !self.proteome.is_empty() &&
[INFO] [stderr] 13 |             !self.taxonomy.is_empty()
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/uniprot/valid.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             // Do not try to validate the Organism
[INFO] [stderr] 13 | |             // With virus names being non-standard, it is impossible
[INFO] [stderr] 14 | |             // with an NFA, and extremely time complex otherwise.
[INFO] [stderr] ...  |
[INFO] [stderr] 33 | |             )
[INFO] [stderr] 34 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         // Do not try to validate the Organism
[INFO] [stderr] 12 |             // With virus names being non-standard, it is impossible
[INFO] [stderr] 13 |             // with an NFA, and extremely time complex otherwise.
[INFO] [stderr] 14 |             self.sequence_version > 0 &&
[INFO] [stderr] 15 |             self.protein_evidence < ProteinEvidence::Unknown &&
[INFO] [stderr] 16 |             self.mass > 0 &&
[INFO] [stderr]  ...
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:112:45
[INFO] [stderr]     |
[INFO] [stderr] 112 |         write!(f, "UniProt error: {}", self.description())
[INFO] [stderr]     |                                             ^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:144:43
[INFO] [stderr]     |
[INFO] [stderr] 144 |             ErrorKind::Io(ref err) => err.description(),
[INFO] [stderr]     |                                           ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:145:45
[INFO] [stderr]     |
[INFO] [stderr] 145 |             ErrorKind::Utf8(ref err) => err.description(),
[INFO] [stderr]     |                                             ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:146:49
[INFO] [stderr]     |
[INFO] [stderr] 146 |             ErrorKind::FromUtf8(ref err) => err.description(),
[INFO] [stderr]     |                                                 ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:147:49
[INFO] [stderr]     |
[INFO] [stderr] 147 |             ErrorKind::ParseInt(ref err) => err.description(),
[INFO] [stderr]     |                                                 ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:151:42
[INFO] [stderr]     |
[INFO] [stderr] 151 |                 XmlError::Io(ref e) => e.description(),
[INFO] [stderr]     |                                          ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:152:44
[INFO] [stderr]     |
[INFO] [stderr] 152 |                 XmlError::Utf8(ref e) => e.description(),
[INFO] [stderr]     |                                            ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `core::str::<impl str>::trim_right`: superseded by `trim_end`
[INFO] [stderr]    --> src/io/uniprot.rs:167:37
[INFO] [stderr]     |
[INFO] [stderr] 167 |         assert_eq!(expected, actual.trim_right());
[INFO] [stderr]     |                                     ^^^^^^^^^^ help: replace the use of the deprecated associated function: `trim_end`
[INFO] [stderr] 
[INFO] [stderr] warning: 16 warnings emitted
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/sra/complete.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             self.is_valid() &&
[INFO] [stderr] 13 | |             !self.description.is_empty()
[INFO] [stderr] 14 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         self.is_valid() &&
[INFO] [stderr] 12 |             !self.description.is_empty()
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/sra/valid.rs:10:9
[INFO] [stderr]    |
[INFO] [stderr] 10 | /         (
[INFO] [stderr] 11 | |             !self.seq_id.is_empty() &&
[INFO] [stderr] 12 | |             self.length as usize == self.sequence.len() &&
[INFO] [stderr] 13 | |             self.length as usize == self.quality.len() &&
[INFO] [stderr] 14 | |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stderr] 15 | |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stderr] 16 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 10 |         !self.seq_id.is_empty() &&
[INFO] [stderr] 11 |             self.length as usize == self.sequence.len() &&
[INFO] [stderr] 12 |             self.length as usize == self.quality.len() &&
[INFO] [stderr] 13 |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stderr] 14 |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/uniprot/complete.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             self.is_valid() &&
[INFO] [stderr] 13 | |             !self.proteome.is_empty() &&
[INFO] [stderr] 14 | |             !self.taxonomy.is_empty()
[INFO] [stderr] 15 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         self.is_valid() &&
[INFO] [stderr] 12 |             !self.proteome.is_empty() &&
[INFO] [stderr] 13 |             !self.taxonomy.is_empty()
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> src/db/uniprot/valid.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             // Do not try to validate the Organism
[INFO] [stderr] 13 | |             // With virus names being non-standard, it is impossible
[INFO] [stderr] 14 | |             // with an NFA, and extremely time complex otherwise.
[INFO] [stderr] ...  |
[INFO] [stderr] 33 | |             )
[INFO] [stderr] 34 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         // Do not try to validate the Organism
[INFO] [stderr] 12 |             // With virus names being non-standard, it is impossible
[INFO] [stderr] 13 |             // with an NFA, and extremely time complex otherwise.
[INFO] [stderr] 14 |             self.sequence_version > 0 &&
[INFO] [stderr] 15 |             self.protein_evidence < ProteinEvidence::Unknown &&
[INFO] [stderr] 16 |             self.mass > 0 &&
[INFO] [stderr]  ...
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:112:45
[INFO] [stderr]     |
[INFO] [stderr] 112 |         write!(f, "UniProt error: {}", self.description())
[INFO] [stderr]     |                                             ^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(deprecated)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:144:43
[INFO] [stderr]     |
[INFO] [stderr] 144 |             ErrorKind::Io(ref err) => err.description(),
[INFO] [stderr]     |                                           ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:145:45
[INFO] [stderr]     |
[INFO] [stderr] 145 |             ErrorKind::Utf8(ref err) => err.description(),
[INFO] [stderr]     |                                             ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:146:49
[INFO] [stderr]     |
[INFO] [stderr] 146 |             ErrorKind::FromUtf8(ref err) => err.description(),
[INFO] [stderr]     |                                                 ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:147:49
[INFO] [stderr]     |
[INFO] [stderr] 147 |             ErrorKind::ParseInt(ref err) => err.description(),
[INFO] [stderr]     |                                                 ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:151:42
[INFO] [stderr]     |
[INFO] [stderr] 151 |                 XmlError::Io(ref e) => e.description(),
[INFO] [stderr]     |                                          ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: use of deprecated associated function `std::error::Error::description`: use the Display impl or to_string()
[INFO] [stderr]    --> src/util/error.rs:152:44
[INFO] [stderr]     |
[INFO] [stderr] 152 |                 XmlError::Utf8(ref e) => e.description(),
[INFO] [stderr]     |                                            ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: 15 warnings emitted
[INFO] [stderr] 
[INFO] [stderr]     Finished test [unoptimized + debuginfo] target(s) in 0.23s
[INFO] [stderr]      Running /opt/rustwide/target/debug/deps/bdb-46ea9ff2b159eea6
[INFO] [stdout] 
[INFO] [stdout] running 101 tests
[INFO] [stdout] test db::mass_spectra::mgf::tests::msconvert_mgf_test ... ignored
[INFO] [stdout] test db::mass_spectra::mgf::tests::iterator_to_pava_mgf_test ... ok
[INFO] [stdout] test db::mass_spectra::mgf::tests::iterator_to_pwiz_mgf_test ... ok
[INFO] [stdout] test db::mass_spectra::mgf::tests::mgf_iter_test ... ok
[INFO] [stdout] test db::mass_spectra::peak::tests::debug_peak ... ok
[INFO] [stdout] test db::mass_spectra::peak_list::tests::equality_peak_list ... ok
[INFO] [stdout] test db::mass_spectra::peak::tests::equality_peak ... ok
[INFO] [stdout] test db::mass_spectra::peak_list::tests::debug_peak_list ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::fullms_mgf_rt_regex_test ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::fullms_mgf_scan_regex_test ... ok
[INFO] [stdout] test bio::proteins::tests::sequence_mass_monoisotopic ... ok
[INFO] [stdout] test db::mass_spectra::mgf::tests::estimate_size_test ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::msconvert_mgf_charge_regex_test ... ok
[INFO] [stdout] test db::mass_spectra::mgf::tests::iterator_to_msconvert_mgf_test ... ok
[INFO] [stdout] test bio::proteins::tests::sequence_mass_average ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::pava_mgf_title_regex_test ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::pwiz_mgf_charge_regex_test ... ok
[INFO] [stdout] test db::mass_spectra::record::tests::debug_record ... ok
[INFO] [stdout] test db::mass_spectra::record::tests::equality_record ... ok
[INFO] [stdout] test bio::proteins::tests::one_letter_mass ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::pwiz_mgf_title_regex_test ... ok
[INFO] [stdout] test db::sra::fastq::tests::fastq_iter_test ... ok
[INFO] [stdout] test db::mass_spectra::record_list::tests::equality_record_list ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::pava_mgf_pepmass_regex_test ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::pwiz_mgf_pepmass_regex_test ... ok
[INFO] [stdout] test db::mass_spectra::record_list::tests::debug_record_list ... ok
[INFO] [stdout] test db::mass_spectra::mgf::tests::iterator_from_msconvert_mgf_test ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::pwiz_mgf_rt_regex_test ... ok
[INFO] [stdout] test db::sra::record::tests::debug_record ... ok
[INFO] [stdout] test db::mass_spectra::mgf::tests::iterator_from_pwiz_mgf_test ... ok
[INFO] [stdout] test db::sra::re::tests::sequence_quality_regex ... ok
[INFO] [stdout] test db::uniprot::client::tests::by_id_list_test ... ignored
[INFO] [stdout] test db::uniprot::client::tests::by_id_test ... ignored
[INFO] [stdout] test db::uniprot::client::tests::by_mnemonic_list_test ... ignored
[INFO] [stdout] test db::uniprot::client::tests::by_mnemonic_test ... ignored
[INFO] [stdout] test db::sra::re::tests::nucleotide_regex ... ok
[INFO] [stdout] test db::uniprot::csv::tests::estimate_size_test ... ok
[INFO] [stdout] test db::uniprot::evidence::tests::protein_evidence_verbose_test ... ok
[INFO] [stdout] test db::sra::record::tests::properties_record ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::pava_mgf_charge_regex_test ... ok
[INFO] [stdout] test db::uniprot::fasta::tests::human_fasta_test ... ignored
[INFO] [stdout] test db::mass_spectra::re::tests::msconvert_mgf_rt_regex_test ... ok
[INFO] [stdout] test db::sra::record::tests::equality_record ... ok
[INFO] [stdout] test db::uniprot::evidence::tests::protein_evidence_xml_verbose_test ... ok
[INFO] [stdout] test db::uniprot::re::tests::all_proteome_regex ... ignored
[INFO] [stdout] test db::uniprot::re::tests::all_taxonomy_regex ... ignored
[INFO] [stdout] test db::uniprot::fasta::tests::estimate_size_test ... ok
[INFO] [stdout] test db::uniprot::fasta::tests::fasta_iter_test ... ok
[INFO] [stdout] test db::uniprot::re::tests::human_accession_regex ... ignored
[INFO] [stdout] test db::uniprot::re::tests::human_aminoacid_regex ... ignored
[INFO] [stdout] test db::uniprot::re::tests::human_fasta_header_regex ... ignored
[INFO] [stdout] test db::uniprot::re::tests::human_gene_regex ... ignored
[INFO] [stdout] test db::uniprot::re::tests::human_mnemonic_regex ... ignored
[INFO] [stdout] test db::uniprot::evidence::tests::debug_protein_evidence_test ... ok
[INFO] [stdout] test db::uniprot::evidence::tests::serialize_protein_evidence_test ... ok
[INFO] [stdout] test db::mass_spectra::mgf::tests::iterator_from_pava_mgf_test ... ok
[INFO] [stdout] test db::sra::re::tests::fastq_header_regex ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::msconvert_mgf_pepmass_regex_test ... ok
[INFO] [stdout] test db::uniprot::re::tests::taxonomy_regex ... ok
[INFO] [stdout] test db::uniprot::re::tests::mnemonic_regex ... ok
[INFO] [stdout] test db::uniprot::record::tests::csv_record ... ok
[INFO] [stdout] test db::uniprot::re::tests::accession_regex ... ok
[INFO] [stdout] test db::uniprot::record::tests::equality_record ... ok
[INFO] [stdout] test db::mass_spectra::re::tests::msconvert_mgf_title_regex_test ... ok
[INFO] [stdout] test db::uniprot::record::tests::debug_record ... ok
[INFO] [stdout] test db::uniprot::re::tests::proteome_regex ... ok
[INFO] [stdout] test db::uniprot::re::tests::gene_regex ... ok
[INFO] [stdout] test db::uniprot::fasta::tests::iterator_to_fasta_test ... ok
[INFO] [stdout] test db::uniprot::record_list::tests::list_csv_test ... ignored
[INFO] [stdout] test db::uniprot::record_list::tests::list_fasta_test ... ignored
[INFO] [stdout] test db::uniprot::record_list::tests::list_xml_test ... ignored
[INFO] [stdout] test db::uniprot::record_list::tests::equality_list ... ok
[INFO] [stdout] test db::uniprot::re::tests::swissprot_header_regex ... ok
[INFO] [stdout] test db::uniprot::section::tests::debug_section_test ... ok
[INFO] [stdout] test db::uniprot::csv::tests::iterator_to_csv_test ... ok
[INFO] [stdout] test db::uniprot::xml::tests::atcc_xml_test ... ignored
[INFO] [stdout] test db::uniprot::xml::tests::bsa_test ... ignored
[INFO] [stdout] test db::uniprot::xml::tests::dpb1_test ... ignored
[INFO] [stdout] test db::uniprot::record_list::tests::properties_list ... ok
[INFO] [stdout] test db::uniprot::xml::tests::gapdh_test ... ignored
[INFO] [stdout] test db::uniprot::section::tests::serialize_section_test ... ok
[INFO] [stdout] test db::uniprot::xml::tests::estimate_size_test ... ok
[INFO] [stdout] test io::uniprot::tests::csv_test ... ignored
[INFO] [stdout] test io::uniprot::tests::fasta_test ... ignored
[INFO] [stdout] test io::uniprot::tests::xml_test ... ignored
[INFO] [stdout] test db::uniprot::fasta::tests::iterator_from_fasta_test ... ok
[INFO] [stdout] test db::uniprot::record::tests::xml_record ... ok
[INFO] [stdout] test db::uniprot::record::tests::properties_record ... ok
[INFO] [stdout] test db::uniprot::xml::tests::iterator_to_xml_test ... ok
[INFO] [stdout] test util::xml::tests::xml_read_test ... ok
[INFO] [stdout] test db::uniprot::record::tests::fasta_record ... ok
[INFO] [stdout] test util::xml::tests::xml_write_test ... ok
[INFO] [stdout] test db::uniprot::re::tests::trembl_header_regex ... ok
[INFO] [stdout] test db::uniprot::re::tests::aminoacid_regex ... ok
[INFO] [stdout] test util::xml::tests::xml_declaration_test ... ok
[INFO] [stdout] test db::uniprot::csv::tests::iterator_from_csv_test ... ok
[INFO] [stdout] test db::uniprot::record_list::tests::debug_list ... ok
[INFO] [stdout] test db::uniprot::xml::tests::iterator_from_xml_test ... ok
[INFO] [stdout] test db::uniprot::record_list::tests::xml_list ... ok
[INFO] [stdout] test db::uniprot::record_list::tests::fasta_list ... ok
[INFO] [stdout] test db::uniprot::record_list::tests::csv_list ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 78 passed; 0 failed; 23 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests bdb
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> /opt/rustwide/workdir/src/db/mass_spectra/complete.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             self.is_valid() &&
[INFO] [stderr] 13 | |             self.ms_level != 0 &&
[INFO] [stderr] 14 | |             !self.filter.is_empty()
[INFO] [stderr] 15 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_parens)]` on by default
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         self.is_valid() &&
[INFO] [stderr] 12 |             self.ms_level != 0 &&
[INFO] [stderr] 13 |             !self.filter.is_empty()
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> /opt/rustwide/workdir/src/db/mass_spectra/valid.rs:9:9
[INFO] [stderr]    |
[INFO] [stderr] 9  | /         (
[INFO] [stderr] 10 | |             self.num != 0 &&
[INFO] [stderr] 11 | |             self.rt >= 0.0 &&
[INFO] [stderr] 12 | |             !self.peaks.is_empty() &&
[INFO] [stderr] ...  |
[INFO] [stderr] 30 | |             )
[INFO] [stderr] 31 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 9  |         self.num != 0 &&
[INFO] [stderr] 10 |             self.rt >= 0.0 &&
[INFO] [stderr] 11 |             !self.peaks.is_empty() &&
[INFO] [stderr] 12 |             // If the MS level is 2 or higher, check the parents are set.
[INFO] [stderr] 13 |             (
[INFO] [stderr] 14 |                 (
[INFO] [stderr]  ...
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> /opt/rustwide/workdir/src/db/sra/complete.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             self.is_valid() &&
[INFO] [stderr] 13 | |             !self.description.is_empty()
[INFO] [stderr] 14 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         self.is_valid() &&
[INFO] [stderr] 12 |             !self.description.is_empty()
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> /opt/rustwide/workdir/src/db/sra/valid.rs:10:9
[INFO] [stderr]    |
[INFO] [stderr] 10 | /         (
[INFO] [stderr] 11 | |             !self.seq_id.is_empty() &&
[INFO] [stderr] 12 | |             self.length as usize == self.sequence.len() &&
[INFO] [stderr] 13 | |             self.length as usize == self.quality.len() &&
[INFO] [stderr] 14 | |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stderr] 15 | |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stderr] 16 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 10 |         !self.seq_id.is_empty() &&
[INFO] [stderr] 11 |             self.length as usize == self.sequence.len() &&
[INFO] [stderr] 12 |             self.length as usize == self.quality.len() &&
[INFO] [stderr] 13 |             NucleotideRegex::validate().is_match(&self.sequence) &&
[INFO] [stderr] 14 |             SequenceQualityRegex::validate().is_match(&self.quality)
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> /opt/rustwide/workdir/src/db/uniprot/complete.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             self.is_valid() &&
[INFO] [stderr] 13 | |             !self.proteome.is_empty() &&
[INFO] [stderr] 14 | |             !self.taxonomy.is_empty()
[INFO] [stderr] 15 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         self.is_valid() &&
[INFO] [stderr] 12 |             !self.proteome.is_empty() &&
[INFO] [stderr] 13 |             !self.taxonomy.is_empty()
[INFO] [stderr]    |
[INFO] [stderr] 
[INFO] [stderr] warning: unnecessary parentheses around block return value
[INFO] [stderr]   --> /opt/rustwide/workdir/src/db/uniprot/valid.rs:11:9
[INFO] [stderr]    |
[INFO] [stderr] 11 | /         (
[INFO] [stderr] 12 | |             // Do not try to validate the Organism
[INFO] [stderr] 13 | |             // With virus names being non-standard, it is impossible
[INFO] [stderr] 14 | |             // with an NFA, and extremely time complex otherwise.
[INFO] [stderr] ...  |
[INFO] [stderr] 33 | |             )
[INFO] [stderr] 34 | |         )
[INFO] [stderr]    | |_________^
[INFO] [stderr]    |
[INFO] [stderr] help: remove these parentheses
[INFO] [stderr]    |
[INFO] [stderr] 11 |         // Do not try to validate the Organism
[INFO] [stderr] 12 |             // With virus names being non-standard, it is impossible
[INFO] [stderr] 13 |             // with an NFA, and extremely time complex otherwise.
[INFO] [stderr] 14 |             self.sequence_version > 0 &&
[INFO] [stderr] 15 |             self.protein_evidence < ProteinEvidence::Unknown &&
[INFO] [stderr] 16 |             self.mass > 0 &&
[INFO] [stderr]  ...
[INFO] [stderr] 
[INFO] [stderr] warning: 6 warnings emitted
[INFO] [stderr] 
[INFO] [stdout] 
[INFO] [stdout] running 11 tests
[INFO] [stdout] test src/util/macros.rs - nonzero_float_to_string (line 64) ... FAILED
[INFO] [stdout] test src/util/macros.rs - nonzero_to_string (line 39) ... FAILED
[INFO] [stdout] test src/util/macros.rs - binary_choice (line 12) ... ok
[INFO] [stdout] test src/util/macros.rs - from_commas (line 194) ... ok
[INFO] [stdout] test src/util/macros.rs - write_alls (line 268) ... ok
[INFO] [stdout] test src/util/macros.rs - nonzero_to_commas (line 216) ... ok
[INFO] [stdout] test src/util/macros.rs - nonzero_float_from_string (line 119) ... ok
[INFO] [stdout] test src/util/macros.rs - to_commas (line 147) ... ok
[INFO] [stdout] test src/util/macros.rs - nonzero_from_commas (line 242) ... ok
[INFO] [stdout] test src/util/macros.rs - strip_commas (line 166) ... ok
[INFO] [stdout] test src/util/macros.rs - nonzero_from_string (line 89) ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/util/macros.rs - nonzero_float_to_string (line 64) stdout ----
[INFO] [stdout] error[E0603]: module `util` is private
[INFO] [stdout]   --> src/util/macros.rs:66:10
[INFO] [stdout]    |
[INFO] [stdout] 3  | use bdb::util::Ntoa;
[INFO] [stdout]    |          ^^^^ private module
[INFO] [stdout]    |
[INFO] [stdout] note: the module `util` is defined here
[INFO] [stdout]   --> /opt/rustwide/workdir/src/lib.rs:34:1
[INFO] [stdout]    |
[INFO] [stdout] 34 | pub(crate) mod util;
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `ntoa` found for type `f32` in the current scope
[INFO] [stdout]  --> src/util/macros.rs:68:12
[INFO] [stdout]   |
[INFO] [stdout] 5 | assert_eq!(nonzero_float_to_string!(0.0 as f32), "");
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ method not found in `f32`
[INFO] [stdout]   |
[INFO] [stdout]   = help: items from traits can only be used if the trait is in scope
[INFO] [stdout]   = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] help: the following trait is implemented but not in scope; perhaps add a `use` for it:
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bdb::util::fmt::Ntoa;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `ntoa` found for type `f32` in the current scope
[INFO] [stdout]  --> src/util/macros.rs:69:12
[INFO] [stdout]   |
[INFO] [stdout] 6 | assert_eq!(nonzero_float_to_string!(1.2 as f32), "1.2");
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ method not found in `f32`
[INFO] [stdout]   |
[INFO] [stdout]   = help: items from traits can only be used if the trait is in scope
[INFO] [stdout]   = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] help: the following trait is implemented but not in scope; perhaps add a `use` for it:
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bdb::util::fmt::Ntoa;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 3 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0599, E0603.
[INFO] [stdout] For more information about an error, try `rustc --explain E0599`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] ---- src/util/macros.rs - nonzero_to_string (line 39) stdout ----
[INFO] [stdout] error[E0603]: module `util` is private
[INFO] [stdout]   --> src/util/macros.rs:41:10
[INFO] [stdout]    |
[INFO] [stdout] 3  | use bdb::util::Ntoa;
[INFO] [stdout]    |          ^^^^ private module
[INFO] [stdout]    |
[INFO] [stdout] note: the module `util` is defined here
[INFO] [stdout]   --> /opt/rustwide/workdir/src/lib.rs:34:1
[INFO] [stdout]    |
[INFO] [stdout] 34 | pub(crate) mod util;
[INFO] [stdout]    | ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `ntoa` found for type `i32` in the current scope
[INFO] [stdout]  --> src/util/macros.rs:43:12
[INFO] [stdout]   |
[INFO] [stdout] 5 | assert_eq!(nonzero_to_string!(0 as i32), "");
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ method not found in `i32`
[INFO] [stdout]   |
[INFO] [stdout]   = help: items from traits can only be used if the trait is in scope
[INFO] [stdout]   = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] help: the following trait is implemented but not in scope; perhaps add a `use` for it:
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bdb::util::fmt::Ntoa;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error[E0599]: no method named `ntoa` found for type `i32` in the current scope
[INFO] [stdout]  --> src/util/macros.rs:44:12
[INFO] [stdout]   |
[INFO] [stdout] 6 | assert_eq!(nonzero_to_string!(1 as i32), "1");
[INFO] [stdout]   |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ method not found in `i32`
[INFO] [stdout]   |
[INFO] [stdout]   = help: items from traits can only be used if the trait is in scope
[INFO] [stdout]   = note: this error originates in a macro (in Nightly builds, run with -Z macro-backtrace for more info)
[INFO] [stdout] help: the following trait is implemented but not in scope; perhaps add a `use` for it:
[INFO] [stdout]   |
[INFO] [stdout] 3 | use bdb::util::fmt::Ntoa;
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 3 previous errors
[INFO] [stdout] 
[INFO] [stdout] Some errors have detailed explanations: E0599, E0603.
[INFO] [stdout] For more information about an error, try `rustc --explain E0599`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/util/macros.rs - nonzero_float_to_string (line 64)
[INFO] [stdout]     src/util/macros.rs - nonzero_to_string (line 39)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 9 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass '--doc'
[INFO] running `Command { std: "docker" "inspect" "d809be76ca4c40267fb5892126e432082fd13c97887373636eb75e224b8f6cce", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d809be76ca4c40267fb5892126e432082fd13c97887373636eb75e224b8f6cce", kill_on_drop: false }`
[INFO] [stdout] d809be76ca4c40267fb5892126e432082fd13c97887373636eb75e224b8f6cce
